Sequence Similarity Clusters for the Entities in PDB 4LF9

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 254 36
95 % 41 255 49
90 % 41 255 54
70 % 41 255 64
50 % 54 362 28
40 % 54 362 38
30 % 57 436 36
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 256 34
95 % 41 256 45
90 % 41 256 50
70 % 41 256 59
50 % 48 356 35
40 % 53 438 20
30 % 53 439 34
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 47 513
95 % 41 263 36
90 % 41 263 41
70 % 48 367 22
50 % 48 368 27
40 % 48 368 37
30 % 48 368 57
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 257 32
95 % 41 257 43
90 % 41 257 48
70 % 41 257 57
50 % 48 361 32
40 % 48 361 43
30 % 51 437 39
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 255 35
95 % 41 255 50
90 % 41 255 55
70 % 41 256 62
50 % 41 256 88
40 % 41 256 108
30 % 41 256 120
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 259 29
95 % 43 264 35
90 % 43 264 40
70 % 43 264 50
50 % 53 369 26
40 % 53 370 36
30 % 53 370 56
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 251 37
95 % 41 256 47
90 % 41 256 52
70 % 41 256 61
50 % 41 256 87
40 % 41 257 107
30 % 48 359 63
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 163 58
95 % 41 250 51
90 % 41 254 56
70 % 41 254 66
50 % 41 254 90
40 % 41 254 111
30 % 41 254 123
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 170 57
95 % 37 221 64
90 % 37 221 69
70 % 37 221 79
50 % 37 221 111
40 % 37 221 132
30 % 37 221 143
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 259 27
95 % 42 259 38
90 % 42 259 44
70 % 42 259 53
50 % 49 359 31
40 % 49 359 41
30 % 49 359 59
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 256 30
95 % 41 257 39
90 % 41 257 45
70 % 41 257 54
50 % 48 355 34
40 % 48 356 44
30 % 48 356 62
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 204 48
95 % 41 255 48
90 % 41 255 53
70 % 41 255 63
50 % 41 255 89
40 % 41 255 110
30 % 41 255 122
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 246 39
95 % 41 246 54
90 % 41 246 59
70 % 41 246 69
50 % 41 246 95
40 % 41 246 118
30 % 41 246 131
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 220 45
95 % 37 220 65
90 % 37 220 70
70 % 37 220 80
50 % 38 276 78
40 % 38 276 100
30 % 38 276 112
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 249 38
95 % 41 257 40
90 % 41 257 46
70 % 41 257 55
50 % 48 356 33
40 % 48 357 42
30 % 48 357 61
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 256 33
95 % 41 256 44
90 % 41 256 49
70 % 41 256 58
50 % 49 360 30
40 % 49 360 40
30 % 49 362 58
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 261 25
95 % 48 267 34
90 % 48 267 37
70 % 48 267 46
50 % 48 267 84
40 % 48 267 103
30 % 56 313 77
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 260 26
95 % 42 261 37
90 % 42 261 42
70 % 42 261 51
50 % 49 313 54
40 % 49 314 68
30 % 49 314 89
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 256 31
95 % 42 256 42
90 % 42 260 43
70 % 42 260 52
50 % 50 362 29
40 % 51 364 39
30 % 55 443 33
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 165 73
95 % 41 256 46
90 % 41 256 51
70 % 41 256 60
50 % 48 356 36
40 % 48 356 46
30 % 51 433 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.