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An Information Portal to 105025 Biological Macromolecular Structures

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4LF9
Sequence Clusters for the Sequence Entities in PDB 4LF9
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 265 27
95% 27 267 47
90% 27 267 49
70% 27 267 59
50% 35 384 34
40% 35 384 46
30% 35 389 65
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 268 25
95% 27 268 43
90% 27 268 45
70% 27 268 55
50% 29 378 41
40% 37 454 34
30% 37 454 44
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 29 1047
95% 27 275 35
90% 27 275 37
70% 29 390 24
50% 29 390 33
40% 29 390 45
30% 29 390 68
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 269 22
95% 27 269 41
90% 27 269 43
70% 27 269 53
50% 29 380 38
40% 29 380 51
30% 35 452 47
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 267 26
95% 27 267 48
90% 27 267 50
70% 27 267 60
50% 27 267 93
40% 27 267 119
30% 27 267 141
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 271 20
95% 29 276 32
90% 29 276 34
70% 29 276 47
50% 34 391 32
40% 34 391 43
30% 34 391 67
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 263 28
95% 27 268 45
90% 27 268 47
70% 27 268 57
50% 27 268 91
40% 27 268 117
30% 29 378 76
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 170 54
95% 27 262 49
90% 27 266 51
70% 27 266 61
50% 27 266 94
40% 27 266 120
30% 27 266 142
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 183 48
95% 25 232 61
90% 25 232 64
70% 25 232 78
50% 25 232 115
40% 25 232 139
30% 25 232 160
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 234 37
95% 26 234 59
90% 26 234 63
70% 26 234 77
50% 30 381 37
40% 30 381 49
30% 30 381 72
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 268 23
95% 27 269 38
90% 27 269 41
70% 27 269 51
50% 27 269 90
40% 29 378 53
30% 29 378 75
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 206 42
95% 27 267 46
90% 27 267 48
70% 27 267 58
50% 27 267 92
40% 27 267 118
30% 27 267 140
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 249 34
95% 27 249 53
90% 27 249 55
70% 27 249 67
50% 27 249 104
40% 27 249 132
30% 27 249 151
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 230 38
95% 25 230 63
90% 25 230 66
70% 25 230 80
50% 25 293 73
40% 25 293 99
30% 25 293 119
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 261 29
95% 27 269 39
90% 27 269 42
70% 27 269 52
50% 29 378 39
40% 29 379 52
30% 29 379 74
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 268 24
95% 27 268 42
90% 27 268 44
70% 27 268 54
50% 30 382 36
40% 30 382 48
30% 30 384 71
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 273 18
95% 34 279 29
90% 34 279 30
70% 34 279 44
50% 34 279 84
40% 34 279 106
30% 38 328 94
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 272 19
95% 28 273 36
90% 28 273 38
70% 28 273 49
50% 31 323 56
40% 31 324 73
30% 31 324 96
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 268 21
95% 28 268 40
90% 28 272 39
70% 28 272 50
50% 31 384 35
40% 32 386 47
30% 39 459 43
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 155 76
95% 27 268 44
90% 27 268 46
70% 27 268 56
50% 29 378 40
40% 29 378 54
30% 35 450 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.