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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4LF7
Sequence Clusters for the Sequence Entities in PDB 4LF7
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 265 27
95% 18 267 47
90% 18 267 49
70% 18 267 59
50% 24 382 34
40% 24 382 45
30% 24 387 65
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 268 25
95% 18 268 43
90% 18 268 45
70% 18 268 55
50% 18 376 41
40% 22 416 40
30% 22 416 52
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 29 966
95% 18 275 35
90% 18 275 37
70% 18 388 24
50% 18 388 33
40% 18 388 44
30% 18 388 68
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 269 22
95% 18 269 41
90% 18 269 43
70% 18 269 53
50% 18 378 38
40% 18 378 51
30% 20 414 55
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 267 26
95% 18 267 48
90% 18 267 50
70% 18 267 60
50% 18 267 93
40% 18 267 119
30% 18 267 140
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 271 20
95% 18 276 32
90% 18 276 34
70% 18 276 47
50% 21 389 32
40% 21 389 43
30% 21 389 67
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 263 28
95% 18 268 45
90% 18 268 47
70% 18 268 57
50% 18 268 91
40% 18 268 117
30% 18 376 76
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 170 53
95% 18 262 49
90% 18 266 51
70% 18 266 61
50% 18 266 94
40% 18 266 120
30% 18 266 142
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 183 47
95% 18 232 61
90% 18 232 64
70% 18 232 78
50% 18 232 113
40% 18 232 138
30% 18 232 158
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 234 37
95% 19 234 59
90% 19 234 63
70% 19 234 77
50% 19 379 37
40% 19 379 49
30% 19 379 72
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 268 23
95% 18 269 38
90% 18 269 41
70% 18 269 51
50% 18 269 90
40% 18 376 53
30% 18 376 75
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 206 42
95% 18 267 46
90% 18 267 48
70% 18 267 58
50% 18 267 92
40% 18 267 118
30% 18 267 139
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 249 33
95% 18 249 52
90% 18 249 55
70% 18 249 66
50% 18 249 103
40% 18 249 130
30% 18 249 150
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 230 38
95% 18 230 62
90% 18 230 65
70% 18 230 79
50% 18 293 73
40% 18 293 97
30% 18 293 118
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 261 29
95% 18 269 39
90% 18 269 42
70% 18 269 52
50% 18 376 39
40% 18 377 52
30% 18 377 74
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 268 24
95% 18 268 42
90% 18 268 44
70% 18 268 54
50% 18 380 36
40% 18 380 48
30% 18 382 70
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 273 18
95% 25 279 29
90% 25 279 30
70% 25 279 44
50% 25 279 82
40% 25 279 106
30% 27 326 94
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 272 19
95% 19 273 36
90% 19 273 38
70% 19 273 49
50% 20 321 56
40% 20 322 73
30% 20 322 96
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 268 21
95% 19 268 40
90% 19 272 39
70% 19 272 50
50% 20 382 35
40% 21 384 46
30% 24 421 51
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 155 76
95% 18 268 44
90% 18 268 46
70% 18 268 56
50% 18 376 40
40% 18 376 54
30% 20 412 57
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.