Sequence Similarity Clusters for the Entities in PDB 4LF4

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 237 25
95 % 53 238 38
90 % 53 238 43
70 % 53 238 53
50 % 65 330 30
40 % 65 330 40
30 % 71 396 41
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 239 23
95 % 53 239 34
90 % 53 239 39
70 % 53 239 48
50 % 59 324 38
40 % 67 397 27
30 % 67 398 39
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 44 507
95 % 53 246 22
90 % 53 246 27
70 % 59 335 23
50 % 59 336 29
40 % 59 336 39
30 % 59 336 56
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 240 20
95 % 53 240 32
90 % 53 240 37
70 % 53 240 46
50 % 59 329 35
40 % 59 329 46
30 % 65 397 46
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 238 24
95 % 53 238 39
90 % 53 238 44
70 % 53 239 51
50 % 53 239 82
40 % 53 239 108
30 % 53 239 124
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 242 16
95 % 55 247 21
90 % 55 247 26
70 % 55 247 37
50 % 64 337 27
40 % 64 338 38
30 % 64 338 54
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 234 26
95 % 53 239 36
90 % 53 239 41
70 % 53 239 50
50 % 53 239 81
40 % 53 240 106
30 % 59 327 65
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 149 57
95 % 53 233 40
90 % 53 237 45
70 % 53 237 54
50 % 53 237 87
40 % 53 237 113
30 % 53 237 128
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 156 56
95 % 47 205 63
90 % 47 205 66
70 % 47 205 75
50 % 47 205 109
40 % 47 205 129
30 % 47 205 145
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 242 15
95 % 54 242 26
90 % 54 242 31
70 % 54 242 42
50 % 60 327 34
40 % 60 327 44
30 % 60 327 60
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 239 17
95 % 53 240 27
90 % 53 240 33
70 % 53 240 43
50 % 59 323 37
40 % 59 324 47
30 % 59 324 63
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 188 48
95 % 53 238 37
90 % 53 238 42
70 % 53 238 52
50 % 53 238 83
40 % 53 238 110
30 % 53 238 126
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 229 39
95 % 53 229 54
90 % 53 229 58
70 % 53 229 69
50 % 53 229 97
40 % 53 229 118
30 % 53 229 133
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 204 43
95 % 47 204 64
90 % 47 204 67
70 % 47 204 76
50 % 49 252 68
40 % 49 252 93
30 % 49 252 110
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 232 27
95 % 53 240 28
90 % 53 240 34
70 % 53 240 44
50 % 59 324 36
40 % 59 325 45
30 % 59 325 62
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 239 22
95 % 53 239 33
90 % 53 239 38
70 % 53 239 47
50 % 60 328 33
40 % 60 328 43
30 % 60 330 59
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 244 13
95 % 60 250 20
90 % 60 250 25
70 % 60 250 35
50 % 60 250 70
40 % 60 250 94
30 % 66 289 80
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 243 14
95 % 54 244 25
90 % 54 244 29
70 % 54 244 40
50 % 59 289 50
40 % 59 290 62
30 % 59 290 83
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 239 19
95 % 54 239 31
90 % 54 243 30
70 % 54 243 41
50 % 62 330 31
40 % 63 332 41
30 % 70 401 37
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 149 70
95 % 53 239 35
90 % 53 239 40
70 % 53 239 49
50 % 59 324 39
40 % 59 324 49
30 % 65 392 47

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.