Sequence Similarity Clusters for the Entities in PDB 4LF4

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 254 36
95 % 63 255 49
90 % 63 255 54
70 % 63 255 64
50 % 81 362 28
40 % 81 362 38
30 % 87 436 36
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 256 34
95 % 63 256 45
90 % 63 256 50
70 % 63 256 59
50 % 75 356 35
40 % 83 438 20
30 % 83 439 34
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 47 513
95 % 63 263 36
90 % 63 263 41
70 % 75 367 22
50 % 75 368 27
40 % 75 368 37
30 % 75 368 57
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 257 32
95 % 63 257 43
90 % 63 257 48
70 % 63 257 57
50 % 75 361 32
40 % 75 361 43
30 % 81 437 39
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 255 35
95 % 63 255 50
90 % 63 255 55
70 % 63 256 62
50 % 63 256 88
40 % 63 256 108
30 % 63 256 120
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 259 29
95 % 65 264 35
90 % 65 264 40
70 % 65 264 50
50 % 80 369 26
40 % 80 370 36
30 % 80 370 56
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 251 37
95 % 63 256 47
90 % 63 256 52
70 % 63 256 61
50 % 63 256 87
40 % 63 257 107
30 % 75 359 63
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 163 58
95 % 63 250 51
90 % 63 254 56
70 % 63 254 66
50 % 63 254 90
40 % 63 254 111
30 % 63 254 123
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 170 57
95 % 57 221 64
90 % 57 221 69
70 % 57 221 79
50 % 57 221 111
40 % 57 221 132
30 % 57 221 143
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 259 27
95 % 64 259 38
90 % 64 259 44
70 % 64 259 53
50 % 76 359 31
40 % 76 359 41
30 % 76 359 59
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 256 30
95 % 63 257 39
90 % 63 257 45
70 % 63 257 54
50 % 75 355 34
40 % 75 356 44
30 % 75 356 62
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 204 48
95 % 63 255 48
90 % 63 255 53
70 % 63 255 63
50 % 63 255 89
40 % 63 255 110
30 % 63 255 122
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 246 39
95 % 63 246 54
90 % 63 246 59
70 % 63 246 69
50 % 63 246 95
40 % 63 246 118
30 % 63 246 131
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 220 45
95 % 57 220 65
90 % 57 220 70
70 % 57 220 80
50 % 59 276 78
40 % 59 276 100
30 % 59 276 112
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 249 38
95 % 63 257 40
90 % 63 257 46
70 % 63 257 55
50 % 75 356 33
40 % 75 357 42
30 % 75 357 61
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 256 33
95 % 63 256 44
90 % 63 256 49
70 % 63 256 58
50 % 76 360 30
40 % 76 360 40
30 % 76 362 58
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 261 25
95 % 70 267 34
90 % 70 267 37
70 % 70 267 46
50 % 70 267 84
40 % 70 267 103
30 % 82 313 77
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 260 26
95 % 64 261 37
90 % 64 261 42
70 % 64 261 51
50 % 75 313 54
40 % 75 314 68
30 % 75 314 89
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 256 31
95 % 64 256 42
90 % 64 260 43
70 % 64 260 52
50 % 78 362 29
40 % 79 364 39
30 % 86 443 33
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 165 73
95 % 63 256 46
90 % 63 256 51
70 % 63 256 60
50 % 75 356 36
40 % 75 356 46
30 % 81 433 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.