Sequence Similarity Clusters for the Entities in PDB 4LD9

Entity #1 | Chains: A,E
Histone H3.2 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 19 1217
95 % 141 166 77 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.2
PDBFlex
90 % 144 169 80
70 % 145 170 94
50 % 147 174 124
40 % 147 174 144
30 % 147 174 151
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 129 159 57
95 % 148 178 68 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 153 183 70
70 % 153 183 86
50 % 153 183 115
40 % 153 183 139
30 % 153 183 144
Entity #3 | Chains: C,G
Histone H2A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 86 128
95 % 126 161 78 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.6
PDBFlex
90 % 133 169 75
70 % 139 175 89
50 % 149 185 108
40 % 149 185 130
30 % 149 185 139
Entity #4 | Chains: D,H
Histone H2B 1.1 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 12 2116
95 % 125 155 89 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 130 160 86
70 % 137 167 99
50 % 137 167 136
40 % 137 167 149
30 % 137 167 159
Entity #5 | Chains: I
Widom 601 sequence reverse dna, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
Widom 601 sequence forward dna, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: K,L
Regulatory protein SIR3 protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 13242
95 % 7 7 6591 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.3
PDBFlex
90 % 7 7 6583
70 % 7 7 6421
50 % 7 7 6008
40 % 10 10 4140
30 % 10 10 3823

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures