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An Information Portal to 106082 Biological Macromolecular Structures

Crystal structure of the N-terminally acetylated BAH domain of Sir3 bound to the nucleosome core particle
Sequence Clustering and Redundancy Reduction Results
4LD9
Sequence Clusters for the Sequence Entities in PDB 4LD9
Entity #1: Chains: A,E - Histone H3.2 protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 13 1448
95% 89 97 84
90% 92 100 88
70% 92 100 111
50% 94 103 143
40% 94 103 171
30% 94 103 192
Entity #2: Chains: B,F - Histone H4 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 84 74
95% 89 99 82
90% 93 103 81
70% 93 103 99
50% 93 103 137
40% 93 103 166
30% 93 103 188
Entity #3: Chains: C,G - Histone H2A protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 56 139
95% 75 86 97
90% 79 92 91
70% 82 95 110
50% 88 101 134
40% 88 101 164
30% 88 101 186
Entity #4: Chains: D,H - Histone H2B 1.1 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 12 1457
95% 77 86 105
90% 79 88 104
70% 85 94 113
50% 85 94 155
40% 85 94 182
30% 85 94 202
Entity #5: Chains: I - Widom 601 sequence reverse dna, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #6: Chains: J - Widom 601 sequence forward dna, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #7: Chains: K,L - Regulatory protein SIR3 protein, length: 236 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 9491
95% 7 7 4787
90% 7 7 4803
70% 7 7 4743
50% 7 7 4533
40% 10 10 3140
30% 10 10 2906
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.