Sequence Similarity Clusters for the Entities in PDB 4LD9

Entity #1 | Chains: A,E
Histone H3.2 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 19 1189
95 % 139 164 75 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.2
PDBFlex
90 % 142 167 78
70 % 143 168 93
50 % 145 172 122
40 % 145 172 144
30 % 145 172 150
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 127 157 56
95 % 146 176 68 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 151 181 68
70 % 151 181 83
50 % 151 181 112
40 % 151 181 138
30 % 151 181 142
Entity #3 | Chains: C,G
Histone H2A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 83 153
95 % 124 156 80 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.6
PDBFlex
90 % 131 164 76
70 % 137 170 85
50 % 147 180 110
40 % 147 180 137
30 % 147 180 140
Entity #4 | Chains: D,H
Histone H2B 1.1 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 12 2055
95 % 123 153 84 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 128 158 86
70 % 135 165 96
50 % 135 165 134
40 % 135 165 150
30 % 135 165 160
Entity #5 | Chains: I
Widom 601 sequence reverse dna, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
Widom 601 sequence forward dna, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: K,L
Regulatory protein SIR3 protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 12932
95 % 7 7 6464 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.3
PDBFlex
90 % 7 7 6447
70 % 7 7 6294
50 % 7 7 5894
40 % 10 10 4065
30 % 10 10 3751

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures