Sequence Similarity Clusters for the Entities in PDB 4LD9

Entity #1 | Chains: A,E
Histone H3.2 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 19 1148
95 % 136 157 76 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.1
PDBFlex
90 % 139 160 77
70 % 140 161 89
50 % 142 164 125
40 % 142 164 141
30 % 142 164 155
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 124 148 56
95 % 143 167 70 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 148 172 72
70 % 148 172 85
50 % 148 172 117
40 % 148 172 138
30 % 148 172 147
Entity #3 | Chains: C,G
Histone H2A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 78 158
95 % 121 147 78 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.5
PDBFlex
90 % 128 155 78
70 % 134 161 87
50 % 144 171 111
40 % 144 171 134
30 % 144 171 143
Entity #4 | Chains: D,H
Histone H2B 1.1 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 12 1992
95 % 120 143 85 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 125 148 85
70 % 132 155 95
50 % 132 155 133
40 % 132 155 148
30 % 132 155 163
Entity #5 | Chains: I
Widom 601 sequence reverse dna, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
Widom 601 sequence forward dna, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: K,L
Regulatory protein SIR3 protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 12628
95 % 7 7 6313 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.3
PDBFlex
90 % 7 7 6294
70 % 7 7 6159
50 % 7 7 5765
40 % 10 10 3986
30 % 10 10 3678

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.