Sequence Similarity Clusters for the Entities in PDB 4LD9

Entity #1 | Chains: A,E
Histone H3.2 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 16 1204
95 % 113 126 103
90 % 116 129 103
70 % 117 130 116
50 % 119 133 142
40 % 119 133 156
30 % 119 133 175
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 117 85
95 % 119 135 78
90 % 124 140 78
70 % 124 140 92
50 % 124 140 130
40 % 124 140 144
30 % 124 140 163
Entity #3 | Chains: C,G
Histone H2A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 66 129
95 % 98 114 112
90 % 105 123 106
70 % 109 127 106
50 % 116 134 129
40 % 116 134 143
30 % 116 134 162
Entity #4 | Chains: D,H
Histone H2B 1.1 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 1652
95 % 99 113 116
90 % 102 116 117
70 % 108 122 128
50 % 108 122 155
40 % 108 122 169
30 % 108 122 185
Entity #5 | Chains: I
Widom 601 sequence reverse dna, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
Widom 601 sequence forward dna, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: K,L
Regulatory protein SIR3 protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 10820
95 % 7 7 5429
90 % 7 7 5427
70 % 7 7 5325
50 % 7 7 5035
40 % 10 10 3481
30 % 10 10 3226

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.