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An Information Portal to 105097 Biological Macromolecular Structures

Crystal structure of the N-terminally acetylated BAH domain of Sir3 bound to the nucleosome core particle
Sequence Clustering and Redundancy Reduction Results
4LD9
Sequence Clusters for the Sequence Entities in PDB 4LD9
Entity #1: Chains: A,E - Histone H3.2 protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 13 1430
95% 89 97 83
90% 92 100 85
70% 92 100 104
50% 94 103 138
40% 94 103 167
30% 94 103 191
Entity #2: Chains: B,F - Histone H4 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 84 68
95% 89 99 81
90% 93 103 80
70% 93 103 98
50% 93 103 134
40% 93 103 162
30% 93 103 187
Entity #3: Chains: C,G - Histone H2A protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 56 137
95% 75 86 87
90% 79 92 90
70% 82 95 103
50% 88 101 131
40% 88 101 160
30% 88 101 185
Entity #4: Chains: D,H - Histone H2B 1.1 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 12 1438
95% 77 86 88
90% 79 88 96
70% 85 94 109
50% 85 94 149
40% 85 94 177
30% 85 94 197
Entity #5: Chains: I - Widom 601 sequence reverse dna, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #6: Chains: J - Widom 601 sequence forward dna, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #7: Chains: K,L - Regulatory protein SIR3 protein, length: 236 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 9397
95% 7 7 4728
90% 7 7 4747
70% 7 7 4686
50% 7 7 4482
40% 10 10 3110
30% 10 10 2877
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.