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Crystal structure of the N-terminally acetylated BAH domain of Sir3 bound to the nucleosome core particle
Sequence Clustering and Redundancy Reduction Results
4LD9
Sequence Clusters for the Sequence Entities in PDB 4LD9
Entity #1: Chains: A,E - Histone H3.2 protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 14 1322
95% 90 98 98
90% 93 101 104
70% 93 101 123
50% 95 104 159
40% 95 104 181
30% 95 104 199
Entity #2: Chains: B,F - Histone H4 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 84 92
95% 90 100 96
90% 94 104 97
70% 94 104 115
50% 94 104 153
40% 94 104 176
30% 94 104 194
Entity #3: Chains: C,G - Histone H2A protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 56 164
95% 75 86 129
90% 79 92 107
70% 82 95 124
50% 88 101 150
40% 88 101 174
30% 88 101 191
Entity #4: Chains: D,H - Histone H2B 1.1 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 12 1502
95% 77 86 131
90% 79 88 137
70% 85 94 128
50% 85 94 173
40% 85 94 194
30% 85 94 209
Entity #5: Chains: I - Widom 601 sequence reverse dna, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #6: Chains: J - Widom 601 sequence forward dna, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #7: Chains: K,L - Regulatory protein SIR3 protein, length: 236 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 9740
95% 7 7 4925
90% 7 7 4937
70% 7 7 4857
50% 7 7 4611
40% 10 10 3193
30% 10 10 2955
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.