Sequence Similarity Clusters for the Entities in PDB 4LD9

Entity #1 | Chains: A,E
Histone H3.2 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 17 1220
95 % 127 142 98
90 % 130 145 83
70 % 131 146 101
50 % 133 149 133
40 % 133 149 151
30 % 133 149 168
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 133 81
95 % 134 152 71
90 % 139 157 73
70 % 139 157 86
50 % 139 157 124
40 % 139 157 141
30 % 139 157 157
Entity #3 | Chains: C,G
Histone H2A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 70 161
95 % 109 128 110
90 % 118 139 87
70 % 124 145 94
50 % 134 155 120
40 % 134 155 139
30 % 134 155 154
Entity #4 | Chains: D,H
Histone H2B 1.1 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 1841
95 % 111 127 114
90 % 116 132 113
70 % 123 139 120
50 % 123 139 145
40 % 123 139 161
30 % 123 139 179
Entity #5 | Chains: I
Widom 601 sequence reverse dna, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
Widom 601 sequence forward dna, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: K,L
Regulatory protein SIR3 protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 11829
95 % 7 7 5867
90 % 7 7 5861
70 % 7 7 5745
50 % 7 7 5406
40 % 10 10 3757
30 % 10 10 3471

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.