Sequence Similarity Clusters for the Entities in PDB 4L8R

Entity #1 | Chains: A,D
HISTONE MRNA STEM-LOOP rna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,E
3'-5' exoribonuclease 1 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 20161
95 % 2 3 9208 Flexibility: Medium
Max RMSD: 13.5, Avg RMSD: 4.4
PDBFlex
90 % 2 3 9127
70 % 2 3 8765
50 % 2 3 7969
40 % 2 3 7341
30 % 2 3 6499
Entity #3 | Chains: C
Histone RNA hairpin-binding protein protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 47527
95 % 2 2 35514 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 33899
70 % 2 2 30129
50 % 2 2 25689
40 % 2 2 22611
30 % 2 2 19138

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures