Sequence Similarity Clusters for the Entities in PDB 4L8R

Entity #1 | Chains: A,D
HISTONE MRNA STEM-LOOP rna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,E
3'-5' exoribonuclease 1 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19232
95 % 2 3 8817 Flexibility: Medium
Max RMSD: 13.5, Avg RMSD: 4.4
PDBFlex
90 % 2 3 8749
70 % 2 3 8432
50 % 2 3 7658
40 % 2 3 7053
30 % 2 3 6253
Entity #3 | Chains: C
Histone RNA hairpin-binding protein protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 45655
95 % 2 2 34185 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 32680
70 % 2 2 29110
50 % 2 2 24854
40 % 2 2 21877
30 % 2 2 18525

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.