Sequence Similarity Clusters for the Entities in PDB 4L8R

Entity #1 | Chains: A,D
HISTONE MRNA STEM-LOOP rna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,E
3'-5' exoribonuclease 1 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19870
95 % 2 3 9072 Flexibility: Medium
Max RMSD: 13.5, Avg RMSD: 4.4
PDBFlex
90 % 2 3 8993
70 % 2 3 8648
50 % 2 3 7866
40 % 2 3 7252
30 % 2 3 6422
Entity #3 | Chains: C
Histone RNA hairpin-binding protein protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 46974
95 % 2 2 35111 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 33527
70 % 2 2 29811
50 % 2 2 25430
40 % 2 2 22381
30 % 2 2 18939

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures