Sequence Similarity Clusters for the Entities in PDB 4L8R

Entity #1 | Chains: A,D
HISTONE MRNA STEM-LOOP rna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,E
3'-5' exoribonuclease 1 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19450
95 % 2 3 8927 Flexibility: Medium
Max RMSD: 13.5, Avg RMSD: 4.4
PDBFlex
90 % 2 3 8850
70 % 2 3 8513
50 % 2 3 7739
40 % 2 3 7132
30 % 2 3 6318
Entity #3 | Chains: C
Histone RNA hairpin-binding protein protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 46167
95 % 2 2 34565 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 33026
70 % 2 2 29385
50 % 2 2 25088
40 % 2 2 22080
30 % 2 2 18694

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.