Sequence Similarity Clusters for the Entities in PDB 4L8R

Entity #1 | Chains: A,D
HISTONE MRNA STEM-LOOP rna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,E
3'-5' exoribonuclease 1 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21178
95 % 2 3 9377 Flexibility: Medium
Max RMSD: 13.5, Avg RMSD: 4.3
PDBFlex
90 % 2 3 9273
70 % 2 3 8879
50 % 2 3 8099
40 % 2 3 7404
30 % 2 3 6441
Entity #3 | Chains: C
Histone RNA hairpin-binding protein protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 45924
95 % 2 2 37561 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 35829
70 % 2 2 31807
50 % 2 2 27056
40 % 2 2 23719
30 % 2 2 19761

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures