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Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome. This file contains the 30S subunit, tRNA and mRNA molecules from the second 70S ribosome.
Sequence Clustering and Redundancy Reduction Results
4L6M
Sequence Clusters for the Sequence Entities in PDB 4L6M
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1504 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 252 29
95% 177 254 48
90% 177 254 51
70% 177 254 63
50% 222 369 34
40% 222 369 48
30% 222 374 67
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 114 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 255 27
95% 177 255 44
90% 177 255 47
70% 177 255 59
50% 216 363 42
40% 224 403 39
30% 224 403 53
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 224 37
95% 177 262 36
90% 177 262 38
70% 216 375 24
50% 216 375 33
40% 216 375 47
30% 216 375 71
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 256 24
95% 177 256 42
90% 177 256 45
70% 177 256 57
50% 216 365 39
40% 216 365 53
30% 222 401 57
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 254 28
95% 177 254 49
90% 177 254 52
70% 177 254 64
50% 177 254 99
40% 177 254 124
30% 177 254 144
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 258 21
95% 181 263 35
90% 181 263 37
70% 181 263 48
50% 223 376 32
40% 223 376 45
30% 223 376 69
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 250 31
95% 177 255 46
90% 177 255 49
70% 177 255 61
50% 177 255 97
40% 177 255 122
30% 216 363 78
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 92 219
95% 176 249 51
90% 177 253 53
70% 177 253 65
50% 177 253 100
40% 177 253 126
30% 177 253 146
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 26 1130
95% 13 36 1041
90% 13 36 1064
70% 13 36 1093
50% 13 36 1157
40% 13 36 1190
30% 13 36 1178
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 35 742
95% 13 35 1070
90% 13 35 1092
70% 13 35 1130
50% 217 366 38
40% 217 366 52
30% 217 366 75
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 255 25
95% 177 256 39
90% 177 256 43
70% 177 256 55
50% 177 256 96
40% 216 363 55
30% 216 363 77
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 61 359
95% 177 254 47
90% 177 254 50
70% 177 254 62
50% 177 254 98
40% 177 254 123
30% 177 254 143
Entity #21: Chains: U - 30S ribosomal protein Thx protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 238 34
95% 177 238 55
90% 177 238 59
70% 177 238 71
50% 177 238 110
40% 177 238 133
30% 177 238 153
Entity #22: Chains: V,W - tRNA rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - mRNA rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 35 735
95% 13 35 1063
90% 13 35 1085
70% 13 35 1119
50% 37 79 449
40% 37 80 467
30% 37 80 487
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 248 32
95% 177 256 40
90% 177 256 44
70% 177 256 56
50% 216 363 40
40% 216 364 54
30% 216 364 76
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 255 26
95% 177 255 43
90% 177 255 46
70% 177 255 58
50% 217 367 37
40% 217 367 51
30% 217 369 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 260 18
95% 185 266 34
90% 185 266 36
70% 185 266 47
50% 185 266 88
40% 185 266 112
30% 211 313 95
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 259 20
95% 178 260 37
90% 178 260 39
70% 178 260 51
50% 204 308 57
40% 204 309 74
30% 204 309 97
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 255 23
95% 177 255 41
90% 178 259 40
70% 178 259 52
50% 219 369 36
40% 220 371 49
30% 227 408 50
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 113 134
95% 177 255 45
90% 177 255 48
70% 177 255 60
50% 216 363 41
40% 216 363 56
30% 222 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.