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Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome. This file contains the 50S subunit and blasticidin S molecule from the first 70S ribosome.
Sequence Clustering and Redundancy Reduction Results
4L6J
Sequence Clusters for the Sequence Entities in PDB 4L6J
Entity #1: Chains: A - 23S ribosomal RNA rna, length: 2879 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: K - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 19 1893
95% 110 164 106
90% 110 164 114
70% 115 186 112
50% 155 310 58
40% 155 311 75
30% 255 443 48
Entity #11: Chains: L - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 164 62
95% 110 164 104
90% 110 164 112
70% 110 164 133
50% 110 166 171
40% 154 299 91
30% 254 435 53
Entity #12: Chains: M - 50S ribosomal protein L16 protein, length: 134 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 16 2461
95% 110 165 98
90% 110 165 106
70% 115 190 108
50% 154 301 68
40% 154 301 90
30% 154 301 110
Entity #13: Chains: N - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 169 49
95% 111 169 86
90% 111 169 95
70% 111 169 115
50% 155 301 59
40% 155 303 77
30% 155 305 99
Entity #14: Chains: O - 50S ribosomal protein L18 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 21 1637
95% 5 21 2148
90% 5 21 2180
70% 5 21 2191
50% 154 298 69
40% 154 298 93
30% 154 298 113
Entity #15: Chains: P - 50S ribosomal protein L19 protein, length: 137 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 16 2458
95% 110 164 105
90% 110 164 113
70% 110 164 134
50% 110 164 176
40% 110 164 208
30% 110 164 227
Entity #16: Chains: Q - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 156 75
95% 110 164 107
90% 110 164 115
70% 110 164 135
50% 155 304 60
40% 155 305 79
30% 155 305 101
Entity #17: Chains: R - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 164 64
95% 110 164 109
90% 110 164 117
70% 110 164 137
50% 115 192 144
40% 154 299 92
30% 154 299 112
Entity #18: Chains: S - 50S ribosomal protein L22 protein, length: 112 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 171 52
95% 112 172 87
90% 112 172 98
70% 112 172 119
50% 151 284 79
40% 151 284 103
30% 151 286 125
Entity #19: Chains: T - 50S ribosomal protein L23 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 165 57
95% 110 165 99
90% 110 165 107
70% 110 165 129
50% 115 189 148
40% 154 305 82
30% 221 383 70
Entity #2: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: U - 50S ribosomal protein L24 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 164 63
95% 110 164 108
90% 110 164 116
70% 110 164 136
50% 110 166 172
40% 149 279 109
30% 149 281 130
Entity #21: Chains: V - 50S ribosomal protein L25 protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 164 60
95% 111 165 94
90% 111 165 102
70% 111 165 127
50% 111 165 170
40% 111 165 203
30% 111 165 223
Entity #22: Chains: W - 50S ribosomal protein L27 protein, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 16 2493
95% 111 165 92
90% 111 165 101
70% 111 165 125
50% 155 302 63
40% 155 302 83
30% 155 302 103
Entity #23: Chains: X - 50S ribosomal protein L28 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 22 1549
95% 110 161 118
90% 110 161 126
70% 110 161 145
50% 110 161 183
40% 110 161 214
30% 110 161 233
Entity #24: Chains: Y - 50S ribosomal protein L29 protein, length: 62 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 8 7235
95% 3 8 7485
90% 3 8 7414
70% 3 8 7103
50% 3 8 6507
40% 3 8 5994
30% 3 8 5352
Entity #25: Chains: Z - 50S ribosomal protein L30 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 169 54
95% 111 169 91
90% 111 169 100
70% 111 169 122
50% 111 169 167
40% 155 303 86
30% 155 303 106
Entity #26: Chains: 1 - 50S ribosomal protein L31 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 11 4182
95% 6 11 4797
90% 6 11 4819
70% 6 11 4743
50% 6 11 4535
40% 6 11 4251
30% 6 11 3872
Entity #27: Chains: 2 - 50S ribosomal protein L32 protein, length: 52 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 8 7254
95% 3 8 7502
90% 3 8 7431
70% 3 8 7119
50% 3 8 6521
40% 3 8 6007
30% 3 8 5365
Entity #28: Chains: 3 - 50S ribosomal protein L33 protein, length: 44 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 162 69
95% 110 162 115
90% 110 162 123
70% 110 162 143
50% 110 163 180
40% 153 294 97
30% 153 294 118
Entity #29: Chains: 4 - 50S ribosomal protein L34 protein, length: 48 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 164 66
95% 110 164 111
90% 110 164 119
70% 110 164 139
50% 110 164 177
40% 110 164 209
30% 110 164 228
Entity #3: Chains: D - 50S ribosomal protein L2 protein, length: 271 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 164 58
95% 110 164 100
90% 110 164 108
70% 115 186 111
50% 154 297 70
40% 154 297 94
30% 154 297 115
Entity #30: Chains: 5 - 50S ribosomal protein L35 protein, length: 63 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 164 65
95% 110 164 110
90% 110 164 118
70% 110 164 138
50% 115 190 146
40% 115 190 174
30% 115 190 194
Entity #4: Chains: E - 50S ribosomal protein L3 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 164 59
95% 110 164 102
90% 110 164 110
70% 110 164 131
50% 154 302 66
40% 154 302 88
30% 154 303 107
Entity #5: Chains: F - 50S ribosomal protein L4 protein, length: 202 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 16 2422
95% 110 164 101
90% 110 164 109
70% 110 164 130
50% 115 191 145
40% 115 191 173
30% 155 304 104
Entity #6: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 16 2434
95% 111 165 95
90% 111 165 103
70% 116 187 109
50% 156 302 64
40% 156 302 84
30% 156 302 105
Entity #7: Chains: H - 50S ribosomal protein L6 protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 164 61
95% 110 164 103
90% 110 164 111
70% 110 164 132
50% 115 196 136
40% 154 306 80
30% 248 432 55
Entity #8: Chains: I - 50S ribosomal protein L9 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 17 2184
95% 97 132 164
90% 97 132 176
70% 97 132 207
50% 98 137 236
40% 129 242 132
30% 129 242 152
Entity #9: Chains: J - 50S ribosomal protein L13 protein, length: 137 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 159 71
95% 110 159 120
90% 110 159 128
70% 110 159 148
50% 149 279 85
40% 149 279 108
30% 149 280 131
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.