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Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A
Sequence Clustering and Redundancy Reduction Results
4KZZ
Sequence Clusters for the Sequence Entities in PDB 4KZZ
Entity #1: Chains: A - 40S Ribosomal Protein SA protein, length: 295 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 19696
95% 1 9 5611
90% 1 9 5609
70% 1 9 5508
50% 5 22 2041
40% 11 29 1513
30% 11 29 1459
Entity #10: Chains: J - 40S Ribosomal Protein S9 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5161
95% 1 9 5756
90% 1 9 5740
70% 5 23 1913
50% 11 32 1326
40% 11 34 1267
30% 11 34 1254
Entity #11: Chains: K - 40S Ribosomal Protein S10 protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7654
95% 1 9 5800
90% 1 9 5780
70% 1 9 5662
50% 1 10 4876
40% 1 11 4160
30% 1 11 3775
Entity #12: Chains: L - 40S Ribosomal Protein S11 protein, length: 158 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4670
95% 1 10 5251
90% 1 10 5264
70% 5 23 1919
50% 11 32 1330
40% 11 32 1366
30% 11 32 1334
Entity #13: Chains: M - 40S Ribosomal Protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 6 9912
95% 1 9 5856
90% 1 9 5834
70% 1 9 5701
50% 1 10 4940
40% 1 10 4624
30% 7 16 2725
Entity #14: Chains: N - 40S Ribosomal Protein S13 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5221
95% 1 9 5819
90% 1 9 5798
70% 5 24 1837
50% 11 31 1370
40% 11 33 1312
30% 11 33 1293
Entity #15: Chains: O - 40S Ribosomal Protein S14 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4697
95% 1 10 5264
90% 1 10 5279
70% 11 36 1087
50% 13 40 866
40% 320 403 39
30% 320 403 53
Entity #16: Chains: P - 40S Ribosomal Protein S15 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21337
95% 1 10 5282
90% 1 10 5296
70% 1 12 4290
50% 5 26 1690
40% 5 26 1728
30% 5 26 1670
Entity #17: Chains: Q - 40S Ribosomal Protein S16 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4715
95% 1 10 5279
90% 1 10 5294
70% 1 11 4634
50% 11 34 1240
40% 11 36 1186
30% 318 399 60
Entity #18: Chains: R - 40S Ribosomal Protein S17 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 5 11464
95% 1 9 5850
90% 1 9 5828
70% 1 10 5222
50% 11 31 1374
40% 11 31 1418
30% 11 31 1381
Entity #19: Chains: S - 40S Ribosomal Protein S18 protein, length: 152 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4692
95% 1 10 5261
90% 1 10 5276
70% 5 25 1673
50% 11 34 1239
40% 11 36 1184
30% 318 401 57
Entity #2: Chains: B - 40S Ribosomal Protein S3A protein, length: 264 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 19974
95% 1 9 5640
90% 1 9 5639
70% 1 9 5541
50% 9 26 1666
40% 9 27 1645
30% 9 27 1590
Entity #20: Chains: T - 40S Ribosomal Protein S19 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21338
95% 1 9 5831
90% 1 9 5810
70% 1 9 5685
50% 5 23 1971
40% 6 26 1730
30% 12 33 1294
Entity #21: Chains: U - 40S Ribosomal Protein S20 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 6963
95% 1 10 5346
90% 1 10 5355
70% 1 11 4660
50% 7 17 2766
40% 11 30 1484
30% 11 30 1433
Entity #22: Chains: V - 40S Ribosomal Protein S21 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22034
95% 1 3 18447
90% 1 9 5925
70% 1 10 5317
50% 3 22 2092
40% 3 22 2116
30% 3 22 1993
Entity #23: Chains: W - 40S Ribosomal Protein S15A protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4749
95% 1 10 5318
90% 1 10 5329
70% 11 34 1182
50% 12 37 1083
40% 12 37 1107
30% 324 408 50
Entity #24: Chains: X - 40S Ribosomal Protein S23 protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4722
95% 1 12 4331
90% 1 13 3713
70% 11 38 1015
50% 11 40 1025
40% 11 40 1055
30% 11 40 1033
Entity #25: Chains: Y - 40S Ribosomal Protein S24 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21470
95% 1 9 5855
90% 1 9 5833
70% 1 10 5226
50% 3 24 1901
40% 3 24 1912
30% 3 24 1833
Entity #26: Chains: Z - 40S Ribosomal Protein S25 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5263
95% 1 9 5868
90% 1 9 5847
70% 1 10 5241
50% 1 11 4461
40% 5 24 1923
30% 5 24 1841
Entity #27: Chains: a - 40S Ribosomal Protein S26 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21686
95% 1 9 5894
90% 1 9 5876
70% 1 10 5266
50% 3 21 2169
40% 9 27 1662
30% 9 27 1608
Entity #28: Chains: b - 40S Ribosomal Protein S27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5334
95% 1 9 5940
90% 1 9 5922
70% 3 21 2128
50% 9 29 1491
40% 9 29 1535
30% 9 29 1482
Entity #29: Chains: c - 40S Ribosomal Protein S28 protein, length: 69 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5348
95% 1 9 5952
90% 1 9 5935
70% 5 24 1868
50% 11 33 1283
40% 11 33 1319
30% 11 33 1299
Entity #3: Chains: C - 40S Ribosomal Protein S2 protein, length: 278 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 19832
95% 1 3 16816
90% 1 7 7604
70% 1 8 6331
50% 5 22 2042
40% 5 22 2068
30% 5 22 1964
Entity #30: Chains: d - 40S Ribosomal Protein S29 protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 7175
95% 1 8 7424
90% 1 10 5431
70% 5 25 1687
50% 11 33 1284
40% 11 33 1320
30% 11 33 1300
Entity #31: Chains: e - 40S Ribosomal Protein S30 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21471
95% 1 5 11021
90% 1 5 10849
70% 1 5 10267
50% 1 6 8198
40% 1 6 7471
30% 1 6 6615
Entity #32: Chains: f - 40S Ribosomal Protein S27A protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 6769
95% 1 8 7095
90% 1 8 7033
70% 3 17 2730
50% 3 17 2748
40% 3 18 2577
30% 3 18 2403
Entity #33: Chains: g - 40S Ribosomal Protein RACK1 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 2943
95% 2 11 3577
90% 2 11 3615
70% 2 12 3334
50% 9 30 1040
40% 15 36 906
30% 15 36 892
Entity #34: Chains: i - 18S Ribosomal RNA rna, length: 1863 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #35: Chains: j - initiator Met-RNA-i rna, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: k - mRNA rna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #37: Chains: n - human initiation factor eIF1A protein, length: 144 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21351
95% 1 3 17919
90% 1 3 17394
70% 1 3 16015
50% 1 3 14045
40% 1 3 12600
30% 1 3 10851
Entity #4: Chains: D - 40S Ribosomal Protein S3 protein, length: 243 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20167
95% 1 10 5097
90% 1 10 5115
70% 1 11 4564
50% 6 27 1612
40% 12 33 1304
30% 12 34 1248
Entity #5: Chains: E - 40S Ribosomal Protein S4X protein, length: 263 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 19985
95% 1 6 8965
90% 1 9 5641
70% 3 21 2091
50% 9 29 1470
40% 9 29 1516
30% 9 31 1370
Entity #6: Chains: F - 40S Ribosomal Protein S5 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4573
95% 1 10 5164
90% 1 10 5176
70% 5 25 1662
50% 11 35 1177
40% 12 38 1101
30% 12 38 1080
Entity #7: Chains: G - 40S Ribosomal Protein S6 protein, length: 249 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5081
95% 1 9 5659
90% 1 9 5659
70% 1 10 5019
50% 3 22 2049
40% 3 22 2076
30% 3 22 1969
Entity #8: Chains: H - 40S Ribosomal Protein S7 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5160
95% 1 9 5755
90% 1 9 5739
70% 1 10 5099
50% 3 20 2297
40% 3 21 2187
30% 9 28 1529
Entity #9: Chains: I - 40S Ribosomal Protein S8 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20655
95% 1 9 5733
90% 1 9 5719
70% 1 9 5611
50% 9 28 1544
40% 9 28 1578
30% 9 28 1524
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.