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Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A
Sequence Clustering and Redundancy Reduction Results
4KZZ
Sequence Clusters for the Sequence Entities in PDB 4KZZ
Entity #1: Chains: A - 40S Ribosomal Protein SA protein, length: 295 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 19653
95% 1 9 5601
90% 1 9 5598
70% 1 9 5499
50% 5 22 2036
40% 11 29 1508
30% 11 29 1453
Entity #10: Chains: J - 40S Ribosomal Protein S9 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5151
95% 1 9 5746
90% 1 9 5729
70% 5 23 1907
50% 11 32 1319
40% 11 34 1265
30% 11 34 1252
Entity #11: Chains: K - 40S Ribosomal Protein S10 protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7634
95% 1 9 5790
90% 1 9 5769
70% 1 9 5652
50% 1 10 4866
40% 1 11 4149
30% 1 11 3766
Entity #12: Chains: L - 40S Ribosomal Protein S11 protein, length: 158 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4658
95% 1 10 5239
90% 1 10 5251
70% 5 23 1914
50% 11 32 1323
40% 11 32 1361
30% 11 32 1327
Entity #13: Chains: M - 40S Ribosomal Protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 6 9893
95% 1 9 5846
90% 1 9 5823
70% 1 9 5691
50% 1 10 4931
40% 1 10 4616
30% 7 16 2721
Entity #14: Chains: N - 40S Ribosomal Protein S13 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5211
95% 1 9 5809
90% 1 9 5787
70% 5 24 1831
50% 11 31 1366
40% 11 33 1309
30% 11 33 1289
Entity #15: Chains: O - 40S Ribosomal Protein S14 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4685
95% 1 10 5252
90% 1 10 5266
70% 11 36 1086
50% 13 40 865
40% 320 403 39
30% 320 403 53
Entity #16: Chains: P - 40S Ribosomal Protein S15 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21292
95% 1 10 5270
90% 1 10 5283
70% 1 12 4281
50% 5 26 1684
40% 5 26 1719
30% 5 26 1664
Entity #17: Chains: Q - 40S Ribosomal Protein S16 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4703
95% 1 10 5267
90% 1 10 5281
70% 1 11 4625
50% 11 34 1238
40% 11 36 1185
30% 318 399 59
Entity #18: Chains: R - 40S Ribosomal Protein S17 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 5 11444
95% 1 9 5840
90% 1 9 5817
70% 1 10 5212
50% 11 31 1370
40% 11 31 1414
30% 11 31 1374
Entity #19: Chains: S - 40S Ribosomal Protein S18 protein, length: 152 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4680
95% 1 10 5249
90% 1 10 5263
70% 5 25 1668
50% 11 34 1237
40% 11 36 1183
30% 318 401 57
Entity #2: Chains: B - 40S Ribosomal Protein S3A protein, length: 264 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 19931
95% 1 9 5630
90% 1 9 5628
70% 1 9 5532
50% 9 26 1659
40% 9 27 1638
30% 9 27 1584
Entity #20: Chains: T - 40S Ribosomal Protein S19 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21293
95% 1 9 5821
90% 1 9 5799
70% 1 9 5675
50% 5 23 1966
40% 6 26 1721
30% 12 33 1290
Entity #21: Chains: U - 40S Ribosomal Protein S20 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 6947
95% 1 10 5334
90% 1 10 5342
70% 1 11 4651
50% 7 17 2759
40% 11 30 1480
30% 11 30 1427
Entity #22: Chains: V - 40S Ribosomal Protein S21 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21989
95% 1 3 18408
90% 1 9 5913
70% 1 10 5308
50% 3 22 2086
40% 3 22 2108
30% 3 22 1988
Entity #23: Chains: W - 40S Ribosomal Protein S15A protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4737
95% 1 10 5306
90% 1 10 5316
70% 11 34 1180
50% 12 37 1081
40% 12 37 1106
30% 324 408 50
Entity #24: Chains: X - 40S Ribosomal Protein S23 protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4710
95% 1 12 4323
90% 1 13 3707
70% 11 38 1013
50% 11 40 1025
40% 11 40 1054
30% 11 40 1032
Entity #25: Chains: Y - 40S Ribosomal Protein S24 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21425
95% 1 9 5845
90% 1 9 5822
70% 1 10 5216
50% 3 24 1894
40% 3 24 1905
30% 3 24 1828
Entity #26: Chains: Z - 40S Ribosomal Protein S25 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5253
95% 1 9 5858
90% 1 9 5836
70% 1 10 5231
50% 1 11 4448
40% 5 24 1916
30% 5 24 1836
Entity #27: Chains: a - 40S Ribosomal Protein S26 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21641
95% 1 9 5884
90% 1 9 5865
70% 1 10 5256
50% 3 21 2161
40% 9 27 1655
30% 9 27 1602
Entity #28: Chains: b - 40S Ribosomal Protein S27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5323
95% 1 9 5929
90% 1 9 5910
70% 3 21 2121
50% 9 29 1487
40% 9 29 1530
30% 9 29 1476
Entity #29: Chains: c - 40S Ribosomal Protein S28 protein, length: 69 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5337
95% 1 9 5941
90% 1 9 5923
70% 5 24 1862
50% 11 33 1279
40% 11 33 1316
30% 11 33 1295
Entity #3: Chains: C - 40S Ribosomal Protein S2 protein, length: 278 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 19789
95% 1 3 16779
90% 1 7 7586
70% 1 8 6320
50% 5 22 2037
40% 5 22 2061
30% 5 22 1958
Entity #30: Chains: d - 40S Ribosomal Protein S29 protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 7158
95% 1 8 7407
90% 1 10 5420
70% 5 25 1682
50% 11 33 1280
40% 11 33 1317
30% 11 33 1296
Entity #31: Chains: e - 40S Ribosomal Protein S30 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21426
95% 1 5 10997
90% 1 5 10827
70% 1 5 10249
50% 1 6 8184
40% 1 6 7460
30% 1 6 6605
Entity #32: Chains: f - 40S Ribosomal Protein S27A protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 6755
95% 1 8 7081
90% 1 8 7019
70% 3 17 2719
50% 3 17 2740
40% 3 18 2570
30% 3 18 2399
Entity #33: Chains: g - 40S Ribosomal Protein RACK1 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 2935
95% 2 11 3571
90% 2 11 3609
70% 2 12 3326
50% 9 30 1039
40% 15 36 904
30% 15 36 891
Entity #34: Chains: i - 18S Ribosomal RNA rna, length: 1863 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #35: Chains: j - initiator Met-RNA-i rna, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: k - mRNA rna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #37: Chains: n - human initiation factor eIF1A protein, length: 144 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21306
95% 1 3 17880
90% 1 3 17357
70% 1 3 15988
50% 1 3 14026
40% 1 3 12585
30% 1 3 10838
Entity #4: Chains: D - 40S Ribosomal Protein S3 protein, length: 243 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20124
95% 1 10 5087
90% 1 10 5104
70% 1 11 4555
50% 6 27 1606
40% 12 33 1301
30% 12 34 1246
Entity #5: Chains: E - 40S Ribosomal Protein S4X protein, length: 263 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 19942
95% 1 6 8944
90% 1 9 5630
70% 3 21 2084
50% 9 29 1466
40% 9 29 1511
30% 9 31 1364
Entity #6: Chains: F - 40S Ribosomal Protein S5 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4562
95% 1 10 5152
90% 1 10 5163
70% 5 25 1658
50% 11 35 1176
40% 12 38 1100
30% 12 38 1079
Entity #7: Chains: G - 40S Ribosomal Protein S6 protein, length: 249 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5071
95% 1 9 5649
90% 1 9 5648
70% 1 10 5010
50% 3 22 2044
40% 3 22 2069
30% 3 22 1963
Entity #8: Chains: H - 40S Ribosomal Protein S7 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5150
95% 1 9 5745
90% 1 9 5728
70% 1 10 5089
50% 3 20 2287
40% 3 21 2177
30% 9 28 1523
Entity #9: Chains: I - 40S Ribosomal Protein S8 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20612
95% 1 9 5723
90% 1 9 5708
70% 1 9 5601
50% 9 28 1539
40% 9 28 1572
30% 9 28 1518
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.