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Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A
Sequence Clustering and Redundancy Reduction Results
4KZZ
Sequence Clusters for the Sequence Entities in PDB 4KZZ
Entity #1: Chains: A - 40S Ribosomal Protein SA protein, length: 295 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20329
95% 1 9 5838
90% 1 9 5832
70% 1 9 5712
50% 20 40 702
40% 22 42 655
30% 22 42 657
Entity #10: Chains: J - 40S Ribosomal Protein S9 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5369
95% 1 9 5979
90% 1 9 5962
70% 20 42 602
50% 22 45 577
40% 22 47 580
30% 22 47 577
Entity #11: Chains: K - 40S Ribosomal Protein S10 protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7903
95% 1 9 6016
90% 1 9 5996
70% 1 9 5864
50% 1 10 5020
40% 1 11 4288
30% 1 11 3887
Entity #12: Chains: L - 40S Ribosomal Protein S11 protein, length: 158 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4854
95% 1 10 5453
90% 1 10 5461
70% 20 40 634
50% 22 45 580
40% 22 45 613
30% 22 45 610
Entity #13: Chains: M - 40S Ribosomal Protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 6 10244
95% 1 9 6066
90% 1 9 6044
70% 1 9 5906
50% 1 10 5085
40% 1 10 4758
30% 3 12 2815
Entity #14: Chains: N - 40S Ribosomal Protein S13 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5425
95% 1 9 6031
90% 1 9 6010
70% 20 41 625
50% 22 44 600
40% 22 46 601
30% 22 46 597
Entity #15: Chains: O - 40S Ribosomal Protein S14 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4884
95% 1 10 5468
90% 1 10 5478
70% 22 49 481
50% 24 53 451
40% 241 322 35
30% 241 322 44
Entity #16: Chains: P - 40S Ribosomal Protein S15 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22018
95% 1 10 5488
90% 1 10 5497
70% 1 12 4463
50% 20 43 668
40% 22 45 615
30% 22 45 611
Entity #17: Chains: Q - 40S Ribosomal Protein S16 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4902
95% 1 10 5484
90% 1 10 5494
70% 1 11 4814
50% 22 47 547
40% 22 49 561
30% 239 318 49
Entity #18: Chains: R - 40S Ribosomal Protein S17 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 5 11862
95% 1 9 6060
90% 1 9 6038
70% 1 10 5409
50% 22 44 601
40% 22 44 630
30% 22 44 626
Entity #19: Chains: S - 40S Ribosomal Protein S18 protein, length: 152 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4879
95% 1 10 5465
90% 1 10 5475
70% 20 42 606
50% 22 47 546
40% 22 49 560
30% 242 323 47
Entity #2: Chains: B - 40S Ribosomal Protein S3A protein, length: 264 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20617
95% 1 9 5865
90% 1 9 5861
70% 1 9 5744
50% 21 40 666
40% 21 41 681
30% 21 41 679
Entity #20: Chains: T - 40S Ribosomal Protein S19 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22019
95% 1 9 6041
90% 1 9 6020
70% 1 9 5887
50% 20 40 706
40% 21 43 695
30% 23 46 598
Entity #21: Chains: U - 40S Ribosomal Protein S20 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 7204
95% 1 10 5555
90% 1 10 5560
70% 1 11 4839
50% 22 41 648
40% 22 43 651
30% 22 43 647
Entity #22: Chains: V - 40S Ribosomal Protein S21 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22727
95% 1 3 18995
90% 1 9 6137
70% 1 10 5507
50% 19 40 734
40% 19 40 757
30% 19 40 756
Entity #23: Chains: W - 40S Ribosomal Protein S15A protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4940
95% 1 10 5526
90% 1 10 5532
70% 22 47 499
50% 23 50 509
40% 23 50 545
30% 245 327 43
Entity #24: Chains: X - 40S Ribosomal Protein S23 protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4911
95% 1 12 4522
90% 1 13 3872
70% 22 51 464
50% 22 53 487
40% 22 53 522
30% 22 53 528
Entity #25: Chains: Y - 40S Ribosomal Protein S24 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22147
95% 1 9 6065
90% 1 9 6043
70% 1 10 5414
50% 19 42 696
40% 19 42 720
30% 19 42 718
Entity #26: Chains: Z - 40S Ribosomal Protein S25 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5466
95% 1 9 6078
90% 1 9 6058
70% 1 10 5427
50% 1 11 4602
40% 20 41 722
30% 20 41 720
Entity #27: Chains: a - 40S Ribosomal Protein S26 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22371
95% 1 9 6104
90% 1 9 6087
70% 1 10 5454
50% 2 22 2061
40% 4 24 1606
30% 4 24 1536
Entity #28: Chains: b - 40S Ribosomal Protein S27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5537
95% 1 9 6150
90% 1 9 6134
70% 19 39 669
50% 21 43 627
40% 21 43 661
30% 21 43 662
Entity #29: Chains: c - 40S Ribosomal Protein S28 protein, length: 69 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5553
95% 1 9 6163
90% 1 9 6148
70% 20 41 628
50% 22 46 566
40% 22 46 605
30% 22 46 600
Entity #3: Chains: C - 40S Ribosomal Protein S2 protein, length: 278 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20474
95% 1 3 17322
90% 1 7 7840
70% 1 8 6546
50% 20 39 721
40% 20 39 745
30% 20 39 744
Entity #30: Chains: d - 40S Ribosomal Protein S29 protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 7415
95% 1 8 7662
90% 1 10 5638
70% 20 42 613
50% 22 46 569
40% 22 46 607
30% 22 46 602
Entity #31: Chains: e - 40S Ribosomal Protein S30 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22148
95% 1 5 11360
90% 1 5 11179
70% 1 5 10563
50% 1 6 8426
40% 1 6 7679
30% 1 6 6783
Entity #32: Chains: f - 40S Ribosomal Protein S27A protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 7002
95% 1 8 7330
90% 1 8 7269
70% 2 18 2535
50% 2 18 2532
40% 2 19 2385
30% 2 19 2230
Entity #33: Chains: g - 40S Ribosomal Protein RACK1 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 3113
95% 2 11 3745
90% 2 11 3776
70% 2 12 3489
50% 24 47 491
40% 26 49 478
30% 26 49 493
Entity #34: Chains: i - 18S Ribosomal RNA rna, length: 1863 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #35: Chains: j - initiator Met-RNA-i rna, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: k - mRNA rna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #37: Chains: n - human initiation factor eIF1A protein, length: 144 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22033
95% 1 3 18460
90% 1 3 17907
70% 1 3 16497
50% 1 5 9431
40% 1 5 8601
30% 1 5 7542
Entity #4: Chains: D - 40S Ribosomal Protein S3 protein, length: 243 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20819
95% 1 10 5287
90% 1 10 5300
70% 1 11 4739
50% 21 44 654
40% 23 46 596
30% 23 47 575
Entity #5: Chains: E - 40S Ribosomal Protein S4X protein, length: 263 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20629
95% 1 6 9240
90% 1 9 5863
70% 19 39 663
50% 21 43 620
40% 21 43 656
30% 21 45 620
Entity #6: Chains: F - 40S Ribosomal Protein S5 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4757
95% 1 10 5358
90% 1 10 5364
70% 20 42 600
50% 22 48 533
40% 23 51 543
30% 23 51 541
Entity #7: Chains: G - 40S Ribosomal Protein S6 protein, length: 249 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5292
95% 1 9 5884
90% 1 9 5881
70% 1 10 5207
50% 19 40 722
40% 19 40 747
30% 19 40 746
Entity #8: Chains: H - 40S Ribosomal Protein S7 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5368
95% 1 9 5978
90% 1 9 5961
70% 1 10 5289
50% 19 38 768
40% 19 39 767
30% 21 42 672
Entity #9: Chains: I - 40S Ribosomal Protein S8 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21324
95% 1 9 5958
90% 1 9 5944
70% 1 9 5819
50% 21 42 642
40% 21 42 670
30% 21 42 670
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.