Sequence Similarity Clusters for the Entities in PDB 4KZZ

Entity #1 | Chains: A
40S Ribosomal Protein SA protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 25989
95 % 2 27 1681 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 27 1718
70 % 2 27 1740
50 % 28 77 467
40 % 30 79 479
30 % 30 79 476
Entity #10 | Chains: J
40S Ribosomal Protein S9 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 33 1008
95 % 2 33 1390 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 33 1411
70 % 36 103 292
50 % 36 105 325
40 % 36 109 330
30 % 36 109 342
Entity #11 | Chains: K
40S Ribosomal Protein S10 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1387
95 % 2 27 1715 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 27 1749
70 % 2 27 1772
50 % 2 28 1724
40 % 2 29 1680
30 % 2 29 1645
Entity #12 | Chains: L
40S Ribosomal Protein S11 protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 34 984
95 % 2 34 1347 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 34 1366
70 % 34 94 326
50 % 36 104 330
40 % 36 104 349
30 % 36 104 359
Entity #13 | Chains: M
40S Ribosomal Protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1393
95 % 2 33 1401 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 33 1422
70 % 2 33 1420
50 % 34 88 417
40 % 34 93 430
30 % 36 96 408
Entity #14 | Chains: N
40S Ribosomal Protein S13 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 33 1017
95 % 2 33 1397 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 33 1418
70 % 34 96 320
50 % 36 102 334
40 % 36 106 343
30 % 36 106 352
Entity #15 | Chains: O
40S Ribosomal Protein S14 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1307
95 % 2 26 1765 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 27 1755
70 % 36 100 297
50 % 38 106 308
40 % 326 525 19
30 % 326 525 32
Entity #16 | Chains: P
40S Ribosomal Protein S15 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 11 5670
95 % 2 28 1627
90 % 2 28 1662
70 % 2 30 1579
50 % 35 97 384
40 % 37 103 356
30 % 37 103 363
Entity #17 | Chains: Q
40S Ribosomal Protein S16 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 34 987
95 % 2 34 1350
90 % 2 34 1369
70 % 2 36 1313
50 % 36 106 323
40 % 36 110 328
30 % 324 520 35
Entity #18 | Chains: R
40S Ribosomal Protein S17 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 33 1018
95 % 2 33 1399 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 33 1420
70 % 2 34 1385
50 % 39 102 348
40 % 39 102 373
30 % 39 102 377
Entity #19 | Chains: S
40S Ribosomal Protein S18 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 34 986
95 % 2 34 1349 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 34 1368
70 % 34 92 338
50 % 36 102 333
40 % 36 106 344
30 % 327 523 34
Entity #2 | Chains: B
40S Ribosomal Protein S3A protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26353
95 % 2 27 1692 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 27 1728
70 % 2 27 1749
50 % 29 78 446
40 % 29 80 480
30 % 29 80 479
Entity #20 | Chains: T
40S Ribosomal Protein S19 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 22298
95 % 2 33 1398
90 % 2 33 1419
70 % 2 33 1419
50 % 34 91 401
40 % 35 96 405
30 % 37 99 376
Entity #21 | Chains: U
40S Ribosomal Protein S20 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1311
95 % 2 28 1632 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 28 1667
70 % 2 29 1645
50 % 36 99 349
40 % 36 104 351
30 % 331 525 31
Entity #22 | Chains: V
40S Ribosomal Protein S21 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 23687
95 % 2 33 1405 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 33 1425
70 % 2 34 1391
50 % 33 92 403
40 % 33 92 432
30 % 33 92 433
Entity #23 | Chains: W
40S Ribosomal Protein S15A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 34 990
95 % 2 34 1352
90 % 2 34 1371
70 % 37 108 282
50 % 38 113 306
40 % 38 113 318
30 % 331 538 30
Entity #24 | Chains: X
40S Ribosomal Protein S23 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 32 1041
95 % 2 36 1268 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 37 1262
70 % 36 110 278
50 % 36 114 303
40 % 36 114 313
30 % 36 114 331
Entity #25 | Chains: Y
40S Ribosomal Protein S24 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 22627
95 % 2 33 1400 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 33 1421
70 % 2 34 1386
50 % 33 100 371
40 % 33 100 391
30 % 33 100 401
Entity #26 | Chains: Z
40S Ribosomal Protein S25 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 27 1276
95 % 2 27 1725 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 27 1759
70 % 2 28 1685
50 % 28 74 487
40 % 28 76 513
30 % 28 76 513
Entity #27 | Chains: a
40S Ribosomal Protein S26 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28614
95 % 2 25 1879 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 25 1925
70 % 2 26 1837
50 % 3 49 1021
40 % 5 51 944
30 % 5 51 925
Entity #28 | Chains: b
40S Ribosomal Protein S27 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 33 1023
95 % 2 33 1404 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 33 1424
70 % 33 95 328
50 % 35 100 350
40 % 35 100 374
30 % 35 100 378
Entity #29 | Chains: c
40S Ribosomal Protein S28 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 30 1138
95 % 2 30 1546 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 33 1427
70 % 34 98 311
50 % 36 105 326
40 % 36 105 345
30 % 36 105 355
Entity #3 | Chains: C
40S Ribosomal Protein S2 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 26171
95 % 1 3 21930
90 % 2 25 1880
70 % 2 26 1809
50 % 28 76 476
40 % 28 76 510
30 % 28 76 509
Entity #30 | Chains: d
40S Ribosomal Protein S29 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 34 991
95 % 2 34 1356 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 34 1377
70 % 34 92 339
50 % 36 101 338
40 % 36 101 364
30 % 36 101 365
Entity #31 | Chains: e
40S Ribosomal Protein S30 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 5686
95 % 2 15 3130 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 15 3173
70 % 2 15 3142
50 % 2 16 2882
40 % 2 16 2847
30 % 2 16 2659
Entity #32 | Chains: f
40S Ribosomal Protein S27A protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 23 2036
95 % 2 24 1947 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 24 1996
70 % 3 44 1078
50 % 3 44 1120
40 % 3 45 1108
30 % 3 45 1091
Entity #33 | Chains: g
40S Ribosomal Protein RACK1 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 35 891
95 % 3 35 1206 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 3 35 1235
70 % 4 37 1206
50 % 41 101 328
40 % 43 103 327
30 % 43 103 338
Entity #34 | Chains: i
18S Ribosomal RNA rna, length: 1863 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #35 | Chains: j
initiator Met-RNA-i rna, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #36 | Chains: k
mRNA rna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: n
human initiation factor eIF1A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28176
95 % 1 3 23385 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 3 22627
70 % 1 3 20686
50 % 1 8 8026
40 % 1 8 7370
30 % 1 8 6507
Entity #4 | Chains: D
40S Ribosomal Protein S3 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 15 3552
95 % 2 34 1340 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 34 1362
70 % 35 97 313
50 % 35 99 368
40 % 37 101 360
30 % 37 104 358
Entity #5 | Chains: E
40S Ribosomal Protein S4X protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 19615
95 % 2 26 1756 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 33 1399
70 % 33 93 336
50 % 35 102 335
40 % 35 102 358
30 % 35 106 354
Entity #6 | Chains: F
40S Ribosomal Protein S5 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 34 982
95 % 2 34 1344 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 34 1364
70 % 34 100 303
50 % 36 107 318
40 % 37 112 321
30 % 37 112 334
Entity #7 | Chains: G
40S Ribosomal Protein S6 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 32 1032
95 % 2 33 1379 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 2 33 1401
70 % 2 34 1379
50 % 33 97 382
40 % 33 97 404
30 % 33 97 413
Entity #8 | Chains: H
40S Ribosomal Protein S7 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 33 1007
95 % 2 33 1389 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 33 1410
70 % 2 34 1383
50 % 33 92 400
40 % 33 96 410
30 % 35 101 372
Entity #9 | Chains: I
40S Ribosomal Protein S8 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 20972
95 % 2 33 1387 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 33 1408
70 % 2 33 1413
50 % 35 105 343
40 % 35 101 371
30 % 35 101 371

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.