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Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A
Sequence Clustering and Redundancy Reduction Results
4KZZ
Sequence Clusters for the Sequence Entities in PDB 4KZZ
Entity #1: Chains: A - 40S Ribosomal Protein SA protein, length: 295 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20124
95% 1 9 5760
90% 1 9 5756
70% 1 9 5654
50% 20 40 697
40% 22 42 648
30% 22 42 650
Entity #10: Chains: J - 40S Ribosomal Protein S9 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5307
95% 1 9 5905
90% 1 9 5889
70% 20 42 600
50% 22 45 568
40% 22 47 575
30% 22 47 574
Entity #11: Chains: K - 40S Ribosomal Protein S10 protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7828
95% 1 9 5945
90% 1 9 5926
70% 1 9 5804
50% 1 10 4974
40% 1 11 4243
30% 1 11 3853
Entity #12: Chains: L - 40S Ribosomal Protein S11 protein, length: 158 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4802
95% 1 10 5388
90% 1 10 5398
70% 20 40 628
50% 22 45 570
40% 22 45 607
30% 22 45 604
Entity #13: Chains: M - 40S Ribosomal Protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 6 10147
95% 1 9 6000
90% 1 9 5979
70% 1 9 5842
50% 1 10 5040
40% 1 10 4716
30% 3 12 2787
Entity #14: Chains: N - 40S Ribosomal Protein S13 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5364
95% 1 9 5963
90% 1 9 5943
70% 20 41 620
50% 22 44 589
40% 22 46 597
30% 22 46 594
Entity #15: Chains: O - 40S Ribosomal Protein S14 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4831
95% 1 10 5401
90% 1 10 5413
70% 22 49 476
50% 24 53 445
40% 235 316 35
30% 235 316 44
Entity #16: Chains: P - 40S Ribosomal Protein S15 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21798
95% 1 10 5419
90% 1 10 5430
70% 1 12 4412
50% 20 43 664
40% 22 45 610
30% 22 45 606
Entity #17: Chains: Q - 40S Ribosomal Protein S16 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4849
95% 1 10 5416
90% 1 10 5428
70% 1 11 4753
50% 22 47 543
40% 22 49 555
30% 233 312 53
Entity #18: Chains: R - 40S Ribosomal Protein S17 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 5 11736
95% 1 9 5994
90% 1 9 5973
70% 1 10 5355
50% 22 44 591
40% 22 44 624
30% 22 44 618
Entity #19: Chains: S - 40S Ribosomal Protein S18 protein, length: 152 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4826
95% 1 10 5398
90% 1 10 5410
70% 20 42 603
50% 22 47 542
40% 22 49 554
30% 236 317 50
Entity #2: Chains: B - 40S Ribosomal Protein S3A protein, length: 264 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20408
95% 1 9 5788
90% 1 9 5786
70% 1 9 5687
50% 21 40 661
40% 21 41 675
30% 21 41 675
Entity #20: Chains: T - 40S Ribosomal Protein S19 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21799
95% 1 9 5975
90% 1 9 5955
70% 1 9 5826
50% 20 40 702
40% 21 43 691
30% 23 46 595
Entity #21: Chains: U - 40S Ribosomal Protein S20 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 7133
95% 1 10 5484
90% 1 10 5491
70% 1 11 4776
50% 22 41 642
40% 22 43 642
30% 22 43 637
Entity #22: Chains: V - 40S Ribosomal Protein S21 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22507
95% 1 3 18818
90% 1 9 6071
70% 1 10 5451
50% 19 40 730
40% 19 40 756
30% 19 40 756
Entity #23: Chains: W - 40S Ribosomal Protein S15A protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4884
95% 1 10 5456
90% 1 10 5464
70% 22 47 494
50% 23 50 503
40% 23 50 539
30% 239 321 43
Entity #24: Chains: X - 40S Ribosomal Protein S23 protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4857
95% 1 12 4466
90% 1 13 3829
70% 22 51 460
50% 22 53 483
40% 22 53 518
30% 22 53 526
Entity #25: Chains: Y - 40S Ribosomal Protein S24 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21928
95% 1 9 5999
90% 1 9 5978
70% 1 10 5360
50% 19 42 684
40% 19 42 717
30% 19 42 717
Entity #26: Chains: Z - 40S Ribosomal Protein S25 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5407
95% 1 9 6012
90% 1 9 5992
70% 1 10 5374
50% 1 11 4553
40% 20 41 719
30% 20 41 720
Entity #27: Chains: a - 40S Ribosomal Protein S26 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22152
95% 1 9 6038
90% 1 9 6021
70% 1 10 5400
50% 2 22 2039
40% 4 24 1591
30% 4 24 1521
Entity #28: Chains: b - 40S Ribosomal Protein S27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5476
95% 1 9 6084
90% 1 9 6068
70% 19 39 660
50% 21 43 617
40% 21 43 654
30% 21 43 657
Entity #29: Chains: c - 40S Ribosomal Protein S28 protein, length: 69 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5491
95% 1 9 6096
90% 1 9 6081
70% 20 41 623
50% 22 46 560
40% 22 46 600
30% 22 46 597
Entity #3: Chains: C - 40S Ribosomal Protein S2 protein, length: 278 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20265
95% 1 3 17153
90% 1 7 7770
70% 1 8 6477
50% 20 39 717
40% 20 39 743
30% 20 39 744
Entity #30: Chains: d - 40S Ribosomal Protein S29 protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 7346
95% 1 8 7595
90% 1 10 5565
70% 20 42 609
50% 22 46 563
40% 22 46 602
30% 22 46 599
Entity #31: Chains: e - 40S Ribosomal Protein S30 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21929
95% 1 5 11250
90% 1 5 11070
70% 1 5 10462
50% 1 6 8355
40% 1 6 7611
30% 1 6 6728
Entity #32: Chains: f - 40S Ribosomal Protein S27A protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 6930
95% 1 8 7257
90% 1 8 7194
70% 2 18 2503
50% 2 18 2500
40% 2 19 2356
30% 2 19 2208
Entity #33: Chains: g - 40S Ribosomal Protein RACK1 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 3069
95% 2 11 3699
90% 2 11 3733
70% 2 12 3442
50% 24 47 486
40% 26 49 470
30% 26 49 485
Entity #34: Chains: i - 18S Ribosomal RNA rna, length: 1863 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #35: Chains: j - initiator Met-RNA-i rna, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: k - mRNA rna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #37: Chains: n - human initiation factor eIF1A protein, length: 144 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21813
95% 1 3 18283
90% 1 3 17738
70% 1 3 16341
50% 1 5 9346
40% 1 5 8523
30% 1 5 7483
Entity #4: Chains: D - 40S Ribosomal Protein S3 protein, length: 243 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20609
95% 1 10 5226
90% 1 10 5241
70% 1 11 4682
50% 21 44 649
40% 23 46 594
30% 23 47 572
Entity #5: Chains: E - 40S Ribosomal Protein S4X protein, length: 263 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20420
95% 1 6 9159
90% 1 9 5788
70% 19 39 654
50% 21 43 612
40% 21 43 650
30% 21 45 615
Entity #6: Chains: F - 40S Ribosomal Protein S5 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4704
95% 1 10 5298
90% 1 10 5306
70% 20 42 597
50% 22 48 529
40% 23 51 537
30% 23 51 538
Entity #7: Chains: G - 40S Ribosomal Protein S6 protein, length: 249 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5227
95% 1 9 5807
90% 1 9 5806
70% 1 10 5144
50% 19 40 718
40% 19 40 745
30% 19 40 746
Entity #8: Chains: H - 40S Ribosomal Protein S7 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5306
95% 1 9 5904
90% 1 9 5888
70% 1 10 5231
50% 19 38 760
40% 19 39 764
30% 21 42 669
Entity #9: Chains: I - 40S Ribosomal Protein S8 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21106
95% 1 9 5881
90% 1 9 5868
70% 1 9 5757
50% 21 42 635
40% 21 42 666
30% 21 42 668
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.