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Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A
Sequence Clustering and Redundancy Reduction Results
4KZZ
Sequence Clusters for the Sequence Entities in PDB 4KZZ
Entity #1: Chains: A - 40S Ribosomal Protein SA protein, length: 295 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21093
95% 1 13 3953
90% 1 13 3983
70% 1 13 3952
50% 20 45 673
40% 22 47 617
30% 22 47 617
Entity #10: Chains: J - 40S Ribosomal Protein S9 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 13 3335
95% 1 13 4009
90% 1 13 4041
70% 20 48 559
50% 22 51 527
40% 22 53 546
30% 22 53 547
Entity #11: Chains: K - 40S Ribosomal Protein S10 protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 11 4461
95% 1 13 4020
90% 1 13 4054
70% 1 13 4026
50% 1 14 3649
40% 1 15 3263
30% 1 15 3022
Entity #12: Chains: L - 40S Ribosomal Protein S11 protein, length: 158 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 14 3102
95% 1 14 3766
90% 1 14 3789
70% 20 45 600
50% 22 50 547
40% 22 50 582
30% 22 50 578
Entity #13: Chains: M - 40S Ribosomal Protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5700
95% 1 13 4049
90% 1 13 4084
70% 1 13 4058
50% 19 41 750
40% 19 43 749
30% 21 46 652
Entity #14: Chains: N - 40S Ribosomal Protein S13 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 13 3358
95% 1 13 4028
90% 1 13 4062
70% 20 46 582
50% 22 49 558
40% 22 51 572
30% 22 51 568
Entity #15: Chains: O - 40S Ribosomal Protein S14 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 14 3114
95% 1 14 3775
90% 1 14 3798
70% 22 55 446
50% 24 59 426
40% 267 360 31
30% 267 361 41
Entity #16: Chains: P - 40S Ribosomal Protein S15 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22867
95% 1 14 3787
90% 1 14 3809
70% 1 16 3298
50% 20 47 648
40% 22 56 513
30% 22 56 524
Entity #17: Chains: Q - 40S Ribosomal Protein S16 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 14 3120
95% 1 14 3784
90% 1 14 3806
70% 1 15 3494
50% 22 53 505
40% 22 55 522
30% 265 355 48
Entity #18: Chains: R - 40S Ribosomal Protein S17 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 5 12372
95% 1 13 4047
90% 1 13 4082
70% 1 14 3788
50% 22 50 549
40% 22 50 585
30% 22 50 580
Entity #19: Chains: S - 40S Ribosomal Protein S18 protein, length: 152 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 14 3113
95% 1 14 3773
90% 1 14 3796
70% 20 47 573
50% 22 53 504
40% 22 55 521
30% 268 360 47
Entity #2: Chains: B - 40S Ribosomal Protein S3A protein, length: 264 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21397
95% 1 13 3968
90% 1 13 3998
70% 1 13 3971
50% 21 44 642
40% 21 45 664
30% 21 45 661
Entity #20: Chains: T - 40S Ribosomal Protein S19 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22868
95% 1 13 4036
90% 1 13 4071
70% 1 13 4044
50% 20 46 657
40% 21 49 654
30% 23 52 555
Entity #21: Chains: U - 40S Ribosomal Protein S20 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 12 4204
95% 1 14 3815
90% 1 14 3833
70% 1 15 3511
50% 22 49 561
40% 22 53 548
30% 271 359 42
Entity #22: Chains: V - 40S Ribosomal Protein S21 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 23622
95% 1 3 19675
90% 1 13 4117
70% 1 14 3840
50% 19 46 683
40% 19 46 708
30% 19 46 718
Entity #23: Chains: W - 40S Ribosomal Protein S15A protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 14 3135
95% 1 14 3804
90% 1 14 3824
70% 22 53 459
50% 23 56 477
40% 23 56 504
30% 271 364 40
Entity #24: Chains: X - 40S Ribosomal Protein S23 protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 14 3124
95% 1 16 3288
90% 1 17 3005
70% 22 57 431
50% 22 59 464
40% 22 59 490
30% 22 59 500
Entity #25: Chains: Y - 40S Ribosomal Protein S24 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 23006
95% 1 13 4048
90% 1 13 4083
70% 1 14 3789
50% 19 47 658
40% 19 47 690
30% 19 47 699
Entity #26: Chains: Z - 40S Ribosomal Protein S25 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 13 3373
95% 1 13 4052
90% 1 13 4088
70% 1 14 3797
50% 20 44 695
40% 20 46 693
30% 20 46 703
Entity #27: Chains: a - 40S Ribosomal Protein S26 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 23241
95% 1 13 4063
90% 1 13 4095
70% 1 14 3809
50% 2 26 1768
40% 4 28 1439
30% 4 28 1409
Entity #28: Chains: b - 40S Ribosomal Protein S27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 13 3397
95% 1 13 4085
90% 1 13 4116
70% 19 44 631
50% 21 48 592
40% 21 48 630
30% 21 48 629
Entity #29: Chains: c - 40S Ribosomal Protein S28 protein, length: 69 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 13 3403
95% 1 13 4093
90% 1 13 4126
70% 20 46 586
50% 22 51 536
40% 22 51 575
30% 22 51 570
Entity #3: Chains: C - 40S Ribosomal Protein S2 protein, length: 278 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21241
95% 1 3 17913
90% 1 11 4999
70% 1 12 4427
50% 20 44 689
40% 20 44 717
30% 20 44 723
Entity #30: Chains: d - 40S Ribosomal Protein S29 protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 12 4288
95% 1 12 4873
90% 1 14 3885
70% 20 47 574
50% 22 52 517
40% 22 52 561
30% 22 52 561
Entity #31: Chains: e - 40S Ribosomal Protein S30 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 23007
95% 1 5 11732
90% 1 5 11544
70% 1 5 10910
50% 1 6 8693
40% 1 6 7921
30% 1 6 6968
Entity #32: Chains: f - 40S Ribosomal Protein S27A protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 12 4115
95% 1 12 4720
90% 1 12 4735
70% 2 22 2112
50% 2 22 2126
40% 2 23 2046
30% 2 23 1938
Entity #33: Chains: g - 40S Ribosomal Protein RACK1 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 15 2290
95% 2 15 2896
90% 2 15 2937
70% 3 17 2603
50% 25 53 468
40% 27 55 460
30% 27 55 469
Entity #34: Chains: i - 18S Ribosomal RNA rna, length: 1863 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #35: Chains: j - initiator Met-RNA-i rna, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: k - mRNA rna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #37: Chains: n - human initiation factor eIF1A protein, length: 144 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22882
95% 1 3 19110
90% 1 3 18540
70% 1 3 17070
50% 1 5 9730
40% 1 5 8879
30% 1 5 7761
Entity #4: Chains: D - 40S Ribosomal Protein S3 protein, length: 243 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21614
95% 1 14 3684
90% 1 14 3716
70% 1 15 3452
50% 21 50 604
40% 23 52 556
30% 23 53 546
Entity #5: Chains: E - 40S Ribosomal Protein S4X protein, length: 263 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21411
95% 1 7 8238
90% 1 13 3999
70% 19 44 626
50% 21 48 581
40% 21 48 620
30% 21 50 586
Entity #6: Chains: F - 40S Ribosomal Protein S5 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 14 3058
95% 1 14 3724
90% 1 14 3751
70% 20 48 557
50% 22 54 497
40% 23 57 501
30% 23 57 512
Entity #7: Chains: G - 40S Ribosomal Protein S6 protein, length: 249 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 13 3307
95% 1 13 3979
90% 1 13 4009
70% 1 14 3702
50% 19 45 690
40% 19 45 719
30% 19 45 724
Entity #8: Chains: H - 40S Ribosomal Protein S7 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 13 3334
95% 1 13 4008
90% 1 13 4040
70% 1 14 3737
50% 19 43 721
40% 19 44 736
30% 21 47 642
Entity #9: Chains: I - 40S Ribosomal Protein S8 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22146
95% 1 13 4002
90% 1 13 4034
70% 1 13 4006
50% 21 47 605
40% 21 47 641
30% 21 47 640
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.