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Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A
Sequence Clustering and Redundancy Reduction Results
4KZZ
Sequence Clusters for the Sequence Entities in PDB 4KZZ
Entity #1: Chains: A - 40S Ribosomal Protein SA protein, length: 295 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21280
95% 1 14 3676
90% 1 14 3713
70% 1 14 3694
50% 20 46 661
40% 22 48 610
30% 22 48 606
Entity #10: Chains: J - 40S Ribosomal Protein S9 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 14 3104
95% 1 14 3771
90% 1 14 3800
70% 20 49 538
50% 22 52 516
40% 22 54 536
30% 22 54 545
Entity #11: Chains: K - 40S Ribosomal Protein S10 protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 12 4117
95% 1 14 3794
90% 1 14 3820
70% 1 14 3788
50% 1 15 3432
40% 1 16 3110
30% 1 16 2891
Entity #12: Chains: L - 40S Ribosomal Protein S11 protein, length: 158 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 15 2837
95% 1 15 3501
90% 1 15 3537
70% 20 46 585
50% 22 51 533
40% 22 51 575
30% 22 51 574
Entity #13: Chains: M - 40S Ribosomal Protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 5211
95% 1 14 3840
90% 1 14 3863
70% 1 14 3822
50% 19 42 752
40% 19 44 741
30% 21 47 645
Entity #14: Chains: N - 40S Ribosomal Protein S13 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 14 3144
95% 1 14 3810
90% 1 14 3836
70% 20 47 577
50% 22 50 553
40% 22 52 562
30% 22 52 562
Entity #15: Chains: O - 40S Ribosomal Protein S14 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 15 2841
95% 1 15 3504
90% 1 15 3541
70% 22 56 439
50% 24 60 422
40% 267 361 30
30% 267 362 41
Entity #16: Chains: P - 40S Ribosomal Protein S15 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 23060
95% 1 15 3507
90% 1 15 3544
70% 1 17 3030
50% 20 48 639
40% 22 57 507
30% 22 57 521
Entity #17: Chains: Q - 40S Ribosomal Protein S16 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 15 2844
95% 1 15 3506
90% 1 15 3543
70% 1 16 3327
50% 22 54 502
40% 22 56 519
30% 265 356 48
Entity #18: Chains: R - 40S Ribosomal Protein S17 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 5 12491
95% 1 14 3836
90% 1 14 3861
70% 1 15 3530
50% 22 51 537
40% 22 51 578
30% 22 51 575
Entity #19: Chains: S - 40S Ribosomal Protein S18 protein, length: 152 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 15 2840
95% 1 15 3503
90% 1 15 3540
70% 20 48 563
50% 22 54 501
40% 22 56 518
30% 268 361 47
Entity #2: Chains: B - 40S Ribosomal Protein S3A protein, length: 264 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21583
95% 1 14 3702
90% 1 14 3738
70% 1 14 3722
50% 21 45 635
40% 21 46 655
30% 21 46 652
Entity #20: Chains: T - 40S Ribosomal Protein S19 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 23061
95% 1 14 3819
90% 1 14 3844
70% 1 14 3806
50% 20 47 653
40% 21 50 647
30% 23 53 555
Entity #21: Chains: U - 40S Ribosomal Protein S20 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 13 3405
95% 1 15 3524
90% 1 15 3562
70% 1 16 3347
50% 22 50 555
40% 22 54 540
30% 271 360 42
Entity #22: Chains: V - 40S Ribosomal Protein S21 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 23818
95% 1 3 19854
90% 1 14 3918
70% 1 15 3556
50% 19 47 666
40% 19 47 696
30% 19 47 706
Entity #23: Chains: W - 40S Ribosomal Protein S15A protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 15 2850
95% 1 15 3514
90% 1 15 3552
70% 22 54 456
50% 23 57 472
40% 23 57 500
30% 271 365 40
Entity #24: Chains: X - 40S Ribosomal Protein S23 protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 15 2845
95% 1 17 2983
90% 1 18 2874
70% 22 58 424
50% 22 60 457
40% 22 60 486
30% 22 60 499
Entity #25: Chains: Y - 40S Ribosomal Protein S24 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 23200
95% 1 14 3838
90% 1 14 3862
70% 1 15 3531
50% 19 48 654
40% 19 48 684
30% 19 48 688
Entity #26: Chains: Z - 40S Ribosomal Protein S25 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 14 3169
95% 1 14 3848
90% 1 14 3870
70% 1 15 3536
50% 20 45 687
40% 20 47 686
30% 20 47 690
Entity #27: Chains: a - 40S Ribosomal Protein S26 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 23438
95% 1 13 4091
90% 1 13 4127
70% 1 14 3840
50% 2 26 1785
40% 4 28 1456
30% 4 28 1423
Entity #28: Chains: b - 40S Ribosomal Protein S27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 14 3213
95% 1 14 3893
90% 1 14 3917
70% 19 45 622
50% 21 49 579
40% 21 49 616
30% 21 49 614
Entity #29: Chains: c - 40S Ribosomal Protein S28 protein, length: 69 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 13 3428
95% 1 13 4120
90% 1 13 4156
70% 20 47 579
50% 22 52 520
40% 22 52 565
30% 22 52 567
Entity #3: Chains: C - 40S Ribosomal Protein S2 protein, length: 278 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21428
95% 1 3 18085
90% 1 12 4513
70% 1 13 3988
50% 20 45 678
40% 20 45 703
30% 20 45 713
Entity #30: Chains: d - 40S Ribosomal Protein S29 protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 13 3433
95% 1 13 4126
90% 1 15 3582
70% 20 48 565
50% 22 53 511
40% 22 53 555
30% 22 53 558
Entity #31: Chains: e - 40S Ribosomal Protein S30 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 23201
95% 1 5 11841
90% 1 5 11645
70% 1 5 10994
50% 1 6 8753
40% 1 6 7979
30% 1 6 7016
Entity #32: Chains: f - 40S Ribosomal Protein S27A protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 12 4151
95% 1 12 4755
90% 1 12 4772
70% 2 22 2126
50% 2 22 2140
40% 2 23 2057
30% 2 23 1951
Entity #33: Chains: g - 40S Ribosomal Protein RACK1 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 16 2119
95% 2 16 2715
90% 2 16 2754
70% 3 18 2443
50% 25 54 461
40% 27 56 457
30% 27 56 469
Entity #34: Chains: i - 18S Ribosomal RNA rna, length: 1863 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #35: Chains: j - initiator Met-RNA-i rna, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: k - mRNA rna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #37: Chains: n - human initiation factor eIF1A protein, length: 144 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 23075
95% 1 3 19285
90% 1 3 18698
70% 1 3 17205
50% 1 5 9804
40% 1 5 8954
30% 1 5 7825
Entity #4: Chains: D - 40S Ribosomal Protein S3 protein, length: 243 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21802
95% 1 15 3462
90% 1 15 3496
70% 1 16 3253
50% 21 51 589
40% 23 53 548
30% 23 54 542
Entity #5: Chains: E - 40S Ribosomal Protein S4X protein, length: 263 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21597
95% 1 8 7223
90% 1 14 3741
70% 19 45 615
50% 21 49 572
40% 21 49 611
30% 21 51 584
Entity #6: Chains: F - 40S Ribosomal Protein S5 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 15 2812
95% 1 15 3481
90% 1 15 3516
70% 20 49 537
50% 22 55 494
40% 23 58 497
30% 23 58 510
Entity #7: Chains: G - 40S Ribosomal Protein S6 protein, length: 249 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 13 3336
95% 1 14 3714
90% 1 14 3750
70% 1 15 3477
50% 19 46 681
40% 19 46 706
30% 19 46 717
Entity #8: Chains: H - 40S Ribosomal Protein S7 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 14 3103
95% 1 14 3770
90% 1 14 3799
70% 1 15 3499
50% 19 44 711
40% 19 45 724
30% 21 48 626
Entity #9: Chains: I - 40S Ribosomal Protein S8 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22338
95% 1 14 3751
90% 1 14 3780
70% 1 14 3754
50% 21 48 590
40% 21 48 627
30% 21 48 625
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.