Sequence Similarity Clusters for the Entities in PDB 4KZZ

Entity #1 | Chains: A
40S Ribosomal Protein SA protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 35 1174
95 % 2 35 1401 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 35 1422
70 % 2 35 1434
50 % 2 36 1444
40 % 30 93 473
30 % 30 93 477
Entity #10 | Chains: J
40S Ribosomal Protein S9 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 44 917
95 % 2 44 1130 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 44 1159
70 % 41 124 271
50 % 41 129 289
40 % 41 133 305
30 % 41 133 318
Entity #11 | Chains: K
40S Ribosomal Protein S10 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 34 1223
95 % 2 34 1448 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 34 1472
70 % 2 34 1482
50 % 2 36 1438
40 % 2 36 1416
30 % 2 36 1408
Entity #12 | Chains: L
40S Ribosomal Protein S11 protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 45 891
95 % 2 45 1086 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 45 1114
70 % 39 114 298
50 % 41 128 293
40 % 41 128 325
30 % 41 128 332
Entity #13 | Chains: M
40S Ribosomal Protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 33 1259
95 % 2 42 1181 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 42 1202
70 % 2 42 1226
50 % 39 104 395
40 % 39 113 398
30 % 41 115 381
Entity #14 | Chains: N
40S Ribosomal Protein S13 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 44 909
95 % 2 44 1118 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 44 1146
70 % 39 123 280
50 % 41 126 298
40 % 41 130 316
30 % 41 130 325
Entity #15 | Chains: O
40S Ribosomal Protein S14 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 37 1113
95 % 2 37 1330 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 39 1285
70 % 41 123 272
50 % 43 130 268
40 % 350 594 19
30 % 350 594 33
Entity #16 | Chains: P
40S Ribosomal Protein S15 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 38 1073
95 % 2 38 1285 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 38 1308
70 % 40 105 324
50 % 40 118 351
40 % 42 125 335
30 % 42 125 343
Entity #17 | Chains: Q
40S Ribosomal Protein S16 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 43 947
95 % 2 43 1156 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 43 1181
70 % 2 46 1125
50 % 41 128 292
40 % 41 132 311
30 % 348 589 35
Entity #18 | Chains: R
40S Ribosomal Protein S17 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 44 901
95 % 2 44 1103 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 44 1158
70 % 2 45 1160
50 % 44 123 318
40 % 44 123 350
30 % 44 123 356
Entity #19 | Chains: S
40S Ribosomal Protein S18 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 45 895
95 % 2 45 1091 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 45 1118
70 % 39 111 306
50 % 41 124 304
40 % 41 129 320
30 % 351 591 36
Entity #2 | Chains: B
40S Ribosomal Protein S3A protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26061
95 % 2 37 1346 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 37 1371
70 % 2 37 1387
50 % 29 92 447
40 % 29 96 465
30 % 29 97 468
Entity #20 | Chains: T
40S Ribosomal Protein S19 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 11251
95 % 2 44 1110 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 44 1137
70 % 2 44 1170
50 % 39 110 371
40 % 40 115 383
30 % 42 118 361
Entity #21 | Chains: U
40S Ribosomal Protein S20 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 33 1250
95 % 2 35 1416 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 35 1438
70 % 2 36 1416
50 % 41 115 344
40 % 355 585 20
30 % 355 587 34
Entity #22 | Chains: V
40S Ribosomal Protein S21 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 16060
95 % 2 43 1134 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 43 1161
70 % 2 44 1176
50 % 38 111 370
40 % 38 111 401
30 % 38 111 403
Entity #23 | Chains: W
40S Ribosomal Protein S15A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 45 883
95 % 2 45 1076 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 45 1107
70 % 42 132 255
50 % 43 137 265
40 % 355 607 18
30 % 355 607 32
Entity #24 | Chains: X
40S Ribosomal Protein S23 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 43 925
95 % 2 47 1031 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 48 1041
70 % 41 133 252
50 % 41 138 264
40 % 41 138 291
30 % 41 138 303
Entity #25 | Chains: Y
40S Ribosomal Protein S24 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 42 972
95 % 2 44 1108 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 44 1135
70 % 2 45 1143
50 % 38 123 330
40 % 38 123 362
30 % 38 123 362
Entity #26 | Chains: Z
40S Ribosomal Protein S25 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 37 1105
95 % 2 37 1318 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 37 1341
70 % 2 38 1340
50 % 2 38 1389
40 % 28 87 511
30 % 28 88 501
Entity #27 | Chains: a
40S Ribosomal Protein S26 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27402
95 % 2 28 1767 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 28 1811
70 % 2 28 1819
50 % 5 56 902
40 % 5 56 924
30 % 5 56 911
Entity #28 | Chains: b
40S Ribosomal Protein S27 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 44 913
95 % 2 44 1125 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 44 1152
70 % 38 114 301
50 % 40 121 317
40 % 40 121 352
30 % 40 122 352
Entity #29 | Chains: c
40S Ribosomal Protein S28 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 41 1000
95 % 2 41 1209 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 44 1139
70 % 39 120 288
50 % 41 127 295
40 % 41 127 326
30 % 41 127 334
Entity #3 | Chains: C
40S Ribosomal Protein S2 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26060
95 % 1 3 22975 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 32 1537
70 % 2 33 1506
50 % 2 33 1561
40 % 2 33 1544
30 % 2 33 1531
Entity #30 | Chains: d
40S Ribosomal Protein S29 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 42 986
95 % 2 42 1194 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 42 1216
70 % 39 106 318
50 % 41 119 325
40 % 41 123 338
30 % 41 123 347
Entity #31 | Chains: e
40S Ribosomal Protein S30 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 13 5030
95 % 1 13 5344 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 17 3050
70 % 2 17 3000
50 % 2 18 2806
40 % 2 18 2728
30 % 2 18 2529
Entity #32 | Chains: f
40S Ribosomal Protein S27A protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 29 1780
95 % 2 32 1536 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 32 1563
70 % 4 54 926
50 % 4 58 921
40 % 4 58 932
30 % 4 58 921
Entity #33 | Chains: g
40S Ribosomal Protein RACK1 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 44 871
95 % 3 44 1062 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 3 44 1091
70 % 4 46 1093
50 % 46 118 313
40 % 48 120 327
30 % 48 121 331
Entity #34 | Chains: i
18S Ribosomal RNA rna, length: 1863 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #35 | Chains: j
initiator Met-RNA-i rna, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #36 | Chains: k
mRNA rna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #37 | Chains: n
human initiation factor eIF1A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27395
95 % 1 3 24032 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 3 23247
70 % 1 3 21150
50 % 1 8 8194
40 % 1 8 7484
30 % 1 8 6508
Entity #4 | Chains: D
40S Ribosomal Protein S3 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 40 1016
95 % 2 40 1225 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 40 1245
70 % 40 109 311
50 % 40 116 354
40 % 42 122 340
30 % 42 123 346
Entity #5 | Chains: E
40S Ribosomal Protein S4X protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 31 1309
95 % 2 37 1307 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 44 1131
70 % 38 113 303
50 % 40 126 302
40 % 40 126 331
30 % 40 130 327
Entity #6 | Chains: F
40S Ribosomal Protein S5 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 45 878
95 % 2 45 1072 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 45 1103
70 % 39 122 284
50 % 41 131 281
40 % 42 136 294
30 % 42 136 309
Entity #7 | Chains: G
40S Ribosomal Protein S6 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 44 903
95 % 2 44 1115 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 2 44 1130
70 % 2 46 1117
50 % 39 122 337
40 % 39 123 365
30 % 39 123 368
Entity #8 | Chains: H
40S Ribosomal Protein S7 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 44 902
95 % 2 44 1114 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 44 1142
70 % 2 45 1147
50 % 38 117 355
40 % 38 121 366
30 % 40 125 344
Entity #9 | Chains: I
40S Ribosomal Protein S8 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 44 912
95 % 2 44 1122 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 44 1149
70 % 2 45 1137
50 % 40 125 305
40 % 40 125 336
30 % 40 125 345

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures