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Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A
Sequence Clustering and Redundancy Reduction Results
4KZZ
Sequence Clusters for the Sequence Entities in PDB 4KZZ
Entity #1: Chains: A - 40S Ribosomal Protein SA protein, length: 295 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20278
95% 1 9 5824
90% 1 9 5817
70% 1 9 5699
50% 20 40 701
40% 22 42 653
30% 22 42 657
Entity #10: Chains: J - 40S Ribosomal Protein S9 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5357
95% 1 9 5964
90% 1 9 5946
70% 20 42 601
50% 22 45 576
40% 22 47 580
30% 22 47 578
Entity #11: Chains: K - 40S Ribosomal Protein S10 protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7884
95% 1 9 6001
90% 1 9 5980
70% 1 9 5850
50% 1 10 5011
40% 1 11 4279
30% 1 11 3878
Entity #12: Chains: L - 40S Ribosomal Protein S11 protein, length: 158 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4843
95% 1 10 5440
90% 1 10 5447
70% 20 40 633
50% 22 45 579
40% 22 45 613
30% 22 45 610
Entity #13: Chains: M - 40S Ribosomal Protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 6 10221
95% 1 9 6051
90% 1 9 6028
70% 1 9 5892
50% 1 10 5075
40% 1 10 4748
30% 3 12 2810
Entity #14: Chains: N - 40S Ribosomal Protein S13 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5412
95% 1 9 6016
90% 1 9 5994
70% 20 41 623
50% 22 44 598
40% 22 46 601
30% 22 46 597
Entity #15: Chains: O - 40S Ribosomal Protein S14 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4873
95% 1 10 5455
90% 1 10 5464
70% 22 49 480
50% 24 53 451
40% 237 318 35
30% 237 318 45
Entity #16: Chains: P - 40S Ribosomal Protein S15 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21967
95% 1 10 5475
90% 1 10 5483
70% 1 12 4452
50% 20 43 666
40% 22 45 615
30% 22 45 611
Entity #17: Chains: Q - 40S Ribosomal Protein S16 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4891
95% 1 10 5471
90% 1 10 5480
70% 1 11 4802
50% 22 47 547
40% 22 49 560
30% 235 314 52
Entity #18: Chains: R - 40S Ribosomal Protein S17 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 5 11834
95% 1 9 6045
90% 1 9 6022
70% 1 10 5397
50% 22 44 599
40% 22 44 628
30% 22 44 625
Entity #19: Chains: S - 40S Ribosomal Protein S18 protein, length: 152 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4868
95% 1 10 5452
90% 1 10 5461
70% 20 42 605
50% 22 47 546
40% 22 49 559
30% 238 319 49
Entity #2: Chains: B - 40S Ribosomal Protein S3A protein, length: 264 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20566
95% 1 9 5850
90% 1 9 5845
70% 1 9 5730
50% 21 40 664
40% 21 41 678
30% 21 41 679
Entity #20: Chains: T - 40S Ribosomal Protein S19 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21968
95% 1 9 6026
90% 1 9 6004
70% 1 9 5873
50% 20 40 705
40% 21 43 692
30% 23 46 598
Entity #21: Chains: U - 40S Ribosomal Protein S20 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 7186
95% 1 10 5542
90% 1 10 5546
70% 1 11 4827
50% 22 41 646
40% 22 43 649
30% 22 43 646
Entity #22: Chains: V - 40S Ribosomal Protein S21 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22677
95% 1 3 18962
90% 1 9 6121
70% 1 10 5494
50% 19 40 733
40% 19 40 758
30% 19 40 758
Entity #23: Chains: W - 40S Ribosomal Protein S15A protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4929
95% 1 10 5513
90% 1 10 5518
70% 22 47 499
50% 23 50 509
40% 23 50 545
30% 241 323 44
Entity #24: Chains: X - 40S Ribosomal Protein S23 protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4900
95% 1 12 4511
90% 1 13 3864
70% 22 51 463
50% 22 53 487
40% 22 53 522
30% 22 53 529
Entity #25: Chains: Y - 40S Ribosomal Protein S24 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22097
95% 1 9 6050
90% 1 9 6027
70% 1 10 5402
50% 19 42 693
40% 19 42 719
30% 19 42 720
Entity #26: Chains: Z - 40S Ribosomal Protein S25 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5452
95% 1 9 6063
90% 1 9 6042
70% 1 10 5415
50% 1 11 4595
40% 20 41 721
30% 20 41 722
Entity #27: Chains: a - 40S Ribosomal Protein S26 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22322
95% 1 9 6089
90% 1 9 6071
70% 1 10 5442
50% 2 22 2060
40% 4 24 1603
30% 4 24 1534
Entity #28: Chains: b - 40S Ribosomal Protein S27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5523
95% 1 9 6135
90% 1 9 6118
70% 19 39 669
50% 21 43 625
40% 21 43 659
30% 21 43 662
Entity #29: Chains: c - 40S Ribosomal Protein S28 protein, length: 69 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5539
95% 1 9 6148
90% 1 9 6132
70% 20 41 627
50% 22 46 565
40% 22 46 605
30% 22 46 600
Entity #3: Chains: C - 40S Ribosomal Protein S2 protein, length: 278 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20423
95% 1 3 17288
90% 1 7 7822
70% 1 8 6529
50% 20 39 720
40% 20 39 746
30% 20 39 746
Entity #30: Chains: d - 40S Ribosomal Protein S29 protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 7396
95% 1 8 7645
90% 1 10 5623
70% 20 42 611
50% 22 46 568
40% 22 46 607
30% 22 46 602
Entity #31: Chains: e - 40S Ribosomal Protein S30 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22098
95% 1 5 11333
90% 1 5 11153
70% 1 5 10538
50% 1 6 8412
40% 1 6 7666
30% 1 6 6773
Entity #32: Chains: f - 40S Ribosomal Protein S27A protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 6984
95% 1 8 7311
90% 1 8 7249
70% 2 18 2531
50% 2 18 2528
40% 2 19 2381
30% 2 19 2226
Entity #33: Chains: g - 40S Ribosomal Protein RACK1 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 3102
95% 2 11 3737
90% 2 11 3768
70% 2 12 3468
50% 24 47 491
40% 26 49 478
30% 26 49 494
Entity #34: Chains: i - 18S Ribosomal RNA rna, length: 1863 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #35: Chains: j - initiator Met-RNA-i rna, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: k - mRNA rna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #37: Chains: n - human initiation factor eIF1A protein, length: 144 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21982
95% 1 3 18426
90% 1 3 17874
70% 1 3 16466
50% 1 5 9410
40% 1 5 8582
30% 1 5 7528
Entity #4: Chains: D - 40S Ribosomal Protein S3 protein, length: 243 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20767
95% 1 10 5271
90% 1 10 5283
70% 1 11 4727
50% 21 44 652
40% 23 46 596
30% 23 47 576
Entity #5: Chains: E - 40S Ribosomal Protein S4X protein, length: 263 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20578
95% 1 6 9223
90% 1 9 5847
70% 19 39 663
50% 21 43 618
40% 21 43 654
30% 21 45 620
Entity #6: Chains: F - 40S Ribosomal Protein S5 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 10 4745
95% 1 10 5345
90% 1 10 5350
70% 20 42 599
50% 22 48 533
40% 23 51 543
30% 23 51 542
Entity #7: Chains: G - 40S Ribosomal Protein S6 protein, length: 249 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5280
95% 1 9 5869
90% 1 9 5865
70% 1 10 5193
50% 19 40 721
40% 19 40 748
30% 19 40 748
Entity #8: Chains: H - 40S Ribosomal Protein S7 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 9 5356
95% 1 9 5963
90% 1 9 5945
70% 1 10 5277
50% 19 38 768
40% 19 39 768
30% 21 42 672
Entity #9: Chains: I - 40S Ribosomal Protein S8 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21272
95% 1 9 5943
90% 1 9 5928
70% 1 9 5805
50% 21 42 640
40% 21 42 668
30% 21 42 670
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.