Sequence Similarity Clusters for the Entities in PDB 4KZY

Entity #1 | Chains: A
40S Ribosomal Protein SA protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26591
95 % 4 27 1715 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 27 1754
70 % 4 27 1778
50 % 30 80 464
40 % 32 82 483
30 % 32 82 478
Entity #10 | Chains: J
40S Ribosomal Protein S9 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 33 1033
95 % 4 33 1416 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 33 1439
70 % 38 106 292
50 % 38 110 323
40 % 38 114 325
30 % 38 114 338
Entity #11 | Chains: K
40S Ribosomal Protein S10 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 25 1425
95 % 4 27 1747 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 27 1784
70 % 4 27 1809
50 % 4 28 1764
40 % 4 29 1711
30 % 4 29 1673
Entity #12 | Chains: L
40S Ribosomal Protein S11 protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 34 1009
95 % 4 34 1370 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 34 1392
70 % 36 96 329
50 % 38 109 324
40 % 38 109 343
30 % 38 109 352
Entity #13 | Chains: M
40S Ribosomal Protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 25 1431
95 % 4 33 1425
90 % 4 33 1449
70 % 4 33 1448
50 % 36 88 431
40 % 36 94 438
30 % 38 98 406
Entity #14 | Chains: N
40S Ribosomal Protein S13 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 33 1042
95 % 4 33 1421
90 % 4 33 1445
70 % 36 104 308
50 % 38 107 334
40 % 38 111 340
30 % 38 111 346
Entity #15 | Chains: O
40S Ribosomal Protein S14 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 26 1343
95 % 4 26 1799 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 28 1698
70 % 38 104 300
50 % 40 119 284
40 % 329 547 19
30 % 329 547 31
Entity #16 | Chains: P
40S Ribosomal Protein S15 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 11 5796
95 % 4 28 1663 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 28 1699
70 % 4 32 1482
50 % 37 99 386
40 % 39 106 357
30 % 39 106 366
Entity #17 | Chains: Q
40S Ribosomal Protein S16 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 34 1012
95 % 4 34 1373 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 34 1395
70 % 4 37 1314
50 % 38 111 319
40 % 38 115 323
30 % 327 536 34
Entity #18 | Chains: R
40S Ribosomal Protein S17 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 33 1043
95 % 4 33 1423 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 33 1447
70 % 4 34 1412
50 % 41 104 350
40 % 41 104 374
30 % 41 104 376
Entity #19 | Chains: S
40S Ribosomal Protein S18 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 34 1011
95 % 4 34 1372 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 34 1394
70 % 36 93 347
50 % 38 105 341
40 % 38 110 341
30 % 330 536 35
Entity #2 | Chains: B
40S Ribosomal Protein S3A protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26962
95 % 4 27 1726 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 27 1764
70 % 4 27 1787
50 % 31 80 452
40 % 31 83 484
30 % 31 84 474
Entity #20 | Chains: T
40S Ribosomal Protein S19 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 22808
95 % 4 33 1422
90 % 4 33 1446
70 % 4 33 1447
50 % 36 91 412
40 % 37 96 414
30 % 39 100 381
Entity #21 | Chains: U
40S Ribosomal Protein S20 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 26 1347
95 % 4 28 1668 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 28 1704
70 % 4 29 1685
50 % 38 100 359
40 % 38 106 355
30 % 334 536 32
Entity #22 | Chains: V
40S Ribosomal Protein S21 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 24221
95 % 4 33 1430 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 33 1453
70 % 4 34 1419
50 % 35 94 404
40 % 35 94 436
30 % 35 94 441
Entity #23 | Chains: W
40S Ribosomal Protein S15A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 34 1015
95 % 4 34 1375 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 34 1397
70 % 39 113 282
50 % 40 118 305
40 % 40 118 318
30 % 334 552 30
Entity #24 | Chains: X
40S Ribosomal Protein S23 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 32 1066
95 % 4 36 1292 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 37 1285
70 % 38 114 280
50 % 38 119 302
40 % 38 119 313
30 % 38 119 327
Entity #25 | Chains: Y
40S Ribosomal Protein S24 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 23144
95 % 4 33 1424 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 33 1448
70 % 4 34 1413
50 % 35 104 364
40 % 35 105 383
30 % 35 105 382
Entity #26 | Chains: Z
40S Ribosomal Protein S25 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 27 1312
95 % 4 27 1757 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 27 1793
70 % 4 28 1725
50 % 30 74 499
40 % 30 77 522
30 % 30 77 520
Entity #27 | Chains: a
40S Ribosomal Protein S26 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 29282
95 % 4 25 1916
90 % 4 25 1962
70 % 4 26 1874
50 % 5 51 1007
40 % 7 53 942
30 % 7 53 919
Entity #28 | Chains: b
40S Ribosomal Protein S27 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 33 1049
95 % 4 33 1429 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 33 1452
70 % 35 96 334
50 % 37 102 351
40 % 37 102 375
30 % 37 103 375
Entity #29 | Chains: c
40S Ribosomal Protein S28 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 30 1173
95 % 4 30 1579 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 33 1455
70 % 36 102 312
50 % 38 109 326
40 % 38 109 345
30 % 38 109 353
Entity #3 | Chains: C
40S Ribosomal Protein S2 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26775
95 % 3 3 22444 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 25 1916
70 % 4 26 1844
50 % 30 79 469
40 % 30 79 504
30 % 30 79 504
Entity #30 | Chains: d
40S Ribosomal Protein S29 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 34 1016
95 % 4 34 1380 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 34 1404
70 % 36 92 353
50 % 38 104 344
40 % 38 108 350
30 % 38 108 358
Entity #31 | Chains: e
40S Ribosomal Protein S30 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 11 5812
95 % 4 15 3204 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 15 3247
70 % 4 15 3209
50 % 4 16 2939
40 % 4 16 2901
30 % 4 16 2713
Entity #32 | Chains: f
40S Ribosomal Protein S27A protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 23 2091
95 % 4 24 1983 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 24 2032
70 % 5 44 1100
50 % 5 45 1119
40 % 5 47 1094
30 % 5 47 1074
Entity #33 | Chains: g
40S Ribosomal Protein RACK1 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 35 916
95 % 5 35 1230 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 5 35 1259
70 % 6 37 1231
50 % 43 102 338
40 % 45 104 337
30 % 45 105 344
Entity #34 | Chains: i
18S Ribosomal RNA rna, length: 1863 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #35 | Chains: l
human initiation factor eIF1 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 46328
95 % 2 2 34689 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 33154
70 % 2 2 29500
50 % 2 9 7086
40 % 2 9 6585
30 % 2 9 5875
Entity #36 | Chains: n
human initiation factor eIF1A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28832
95 % 2 3 23935 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 3 23151
70 % 2 3 21092
50 % 2 8 8195
40 % 2 8 7516
30 % 2 8 6633
Entity #4 | Chains: D
40S Ribosomal Protein S3 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 15 3633
95 % 4 34 1363 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 34 1387
70 % 37 98 320
50 % 37 101 371
40 % 39 104 362
30 % 39 107 359
Entity #5 | Chains: E
40S Ribosomal Protein S4X protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 20066
95 % 4 26 1789 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 33 1427
70 % 35 95 337
50 % 37 107 335
40 % 37 107 353
30 % 37 111 347
Entity #6 | Chains: F
40S Ribosomal Protein S5 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 34 1007
95 % 4 34 1367 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 34 1390
70 % 36 104 307
50 % 38 112 316
40 % 39 117 320
30 % 39 117 331
Entity #7 | Chains: G
40S Ribosomal Protein S6 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 32 1057
95 % 4 33 1405 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 4 33 1429
70 % 4 35 1377
50 % 35 102 370
40 % 35 103 391
30 % 35 103 392
Entity #8 | Chains: H
40S Ribosomal Protein S7 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 33 1032
95 % 4 33 1415
90 % 4 33 1438
70 % 4 34 1409
50 % 35 95 399
40 % 35 99 409
30 % 37 106 364
Entity #9 | Chains: I
40S Ribosomal Protein S8 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 21454
95 % 4 33 1412 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 33 1436
70 % 4 33 1441
50 % 37 106 340
40 % 37 106 356
30 % 37 106 363

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.