Sequence Similarity Clusters for the Entities in PDB 4KZY

Entity #1 | Chains: A
40S Ribosomal Protein SA protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 28 1465
95 % 4 28 1738 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 28 1781
70 % 4 28 1787
50 % 4 29 1752
40 % 32 86 495
30 % 32 86 495
Entity #10 | Chains: J
40S Ribosomal Protein S9 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 35 1194
95 % 4 35 1420 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 35 1448
70 % 43 115 285
50 % 43 120 306
40 % 43 124 328
30 % 43 124 336
Entity #11 | Chains: K
40S Ribosomal Protein S10 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 28 1459
95 % 4 28 1730 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 28 1775
70 % 4 28 1783
50 % 4 30 1708
40 % 4 30 1698
30 % 4 30 1675
Entity #12 | Chains: L
40S Ribosomal Protein S11 protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 36 1116
95 % 4 36 1343 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 36 1366
70 % 41 105 313
50 % 43 119 313
40 % 43 119 346
30 % 43 119 352
Entity #13 | Chains: M
40S Ribosomal Protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 26 1612
95 % 4 35 1376
90 % 4 35 1400
70 % 4 35 1420
50 % 41 97 409
40 % 41 106 412
30 % 43 108 398
Entity #14 | Chains: N
40S Ribosomal Protein S13 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 35 1170
95 % 4 35 1396
90 % 4 35 1421
70 % 41 114 293
50 % 43 117 320
40 % 43 121 335
30 % 43 121 342
Entity #15 | Chains: O
40S Ribosomal Protein S14 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 28 1482
95 % 4 28 1758 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 30 1668
70 % 43 114 289
50 % 45 121 288
40 % 352 583 19
30 % 352 583 32
Entity #16 | Chains: P
40S Ribosomal Protein S15 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 29 1401
95 % 4 29 1655 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 29 1690
70 % 42 96 341
50 % 42 109 370
40 % 44 116 362
30 % 44 116 365
Entity #17 | Chains: Q
40S Ribosomal Protein S16 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 36 1118
95 % 4 36 1345 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 36 1367
70 % 4 39 1295
50 % 43 121 300
40 % 43 125 323
30 % 350 580 35
Entity #18 | Chains: R
40S Ribosomal Protein S17 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 35 1139
95 % 4 35 1367 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 35 1442
70 % 4 36 1408
50 % 46 114 349
40 % 46 114 376
30 % 46 114 380
Entity #19 | Chains: S
40S Ribosomal Protein S18 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 36 1126
95 % 4 36 1353 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 36 1375
70 % 41 102 324
50 % 43 115 330
40 % 43 120 338
30 % 353 580 37
Entity #2 | Chains: B
40S Ribosomal Protein S3A protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26734
95 % 4 28 1764 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 28 1809
70 % 4 28 1818
50 % 31 83 463
40 % 31 87 496
30 % 31 88 492
Entity #20 | Chains: T
40S Ribosomal Protein S19 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 15742
95 % 4 35 1383
90 % 4 35 1408
70 % 4 35 1428
50 % 41 101 393
40 % 42 106 406
30 % 44 109 384
Entity #21 | Chains: U
40S Ribosomal Protein S20 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 27 1538
95 % 4 29 1687 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 29 1729
70 % 4 30 1696
50 % 43 109 353
40 % 357 577 20
30 % 357 579 33
Entity #22 | Chains: V
40S Ribosomal Protein S21 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 15966
95 % 4 35 1379 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 35 1390
70 % 4 36 1394
50 % 40 103 389
40 % 40 103 419
30 % 40 103 416
Entity #23 | Chains: W
40S Ribosomal Protein S15A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 36 1109
95 % 4 36 1335 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 36 1359
70 % 44 123 271
50 % 45 128 285
40 % 357 596 18
30 % 357 596 31
Entity #24 | Chains: X
40S Ribosomal Protein S23 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 34 1205
95 % 4 38 1272 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 39 1254
70 % 43 124 269
50 % 43 129 282
40 % 43 129 313
30 % 43 129 323
Entity #25 | Chains: Y
40S Ribosomal Protein S24 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 33 1230
95 % 4 35 1378 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 35 1402
70 % 4 36 1385
50 % 40 114 355
40 % 40 114 382
30 % 40 114 386
Entity #26 | Chains: Z
40S Ribosomal Protein S25 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 28 1471
95 % 4 28 1748 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 28 1791
70 % 4 29 1736
50 % 4 29 1774
40 % 30 78 544
30 % 30 79 542
Entity #27 | Chains: a
40S Ribosomal Protein S26 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27239
95 % 4 26 1900
90 % 4 26 1943
70 % 4 26 1957
50 % 7 54 924
40 % 7 54 945
30 % 7 54 933
Entity #28 | Chains: b
40S Ribosomal Protein S27 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 35 1176
95 % 4 35 1403 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 35 1430
70 % 40 105 317
50 % 42 112 348
40 % 42 112 378
30 % 42 113 375
Entity #29 | Chains: c
40S Ribosomal Protein S28 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 32 1261
95 % 4 32 1504 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 35 1412
70 % 41 111 302
50 % 43 118 317
40 % 43 118 349
30 % 43 118 353
Entity #3 | Chains: C
40S Ribosomal Protein S2 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 25914
95 % 3 3 22857 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 26 1925
70 % 4 26 1943
50 % 4 26 1970
40 % 4 26 1952
30 % 4 26 1863
Entity #30 | Chains: d
40S Ribosomal Protein S29 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 36 1133
95 % 4 36 1359 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 36 1381
70 % 41 100 328
50 % 43 113 343
40 % 43 117 355
30 % 43 117 356
Entity #31 | Chains: e
40S Ribosomal Protein S30 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 11 6467
95 % 3 11 6611 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 15 3401
70 % 4 15 3338
50 % 4 16 3032
40 % 4 16 2948
30 % 4 16 2730
Entity #32 | Chains: f
40S Ribosomal Protein S27A protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 24 2318
95 % 4 25 2049 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 25 2098
70 % 6 47 1053
50 % 6 51 1026
40 % 6 51 1032
30 % 6 51 1026
Entity #33 | Chains: g
40S Ribosomal Protein RACK1 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 37 1040
95 % 5 37 1245 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 5 37 1265
70 % 6 39 1245
50 % 48 111 340
40 % 50 113 342
30 % 50 114 343
Entity #34 | Chains: i
18S Ribosomal RNA rna, length: 1863 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #35 | Chains: l
human initiation factor eIF1 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 44273
95 % 2 2 36970 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 35287
70 % 2 2 31376
50 % 2 9 7174
40 % 2 9 6630
30 % 2 9 5803
Entity #36 | Chains: n
human initiation factor eIF1A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27232
95 % 2 3 23903 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 3 23131
70 % 2 3 21043
50 % 2 8 8153
40 % 2 8 7453
30 % 2 8 6728
Entity #4 | Chains: D
40S Ribosomal Protein S3 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 36 1108
95 % 4 36 1331 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 36 1355
70 % 42 105 311
50 % 42 112 358
40 % 44 118 347
30 % 44 119 349
Entity #5 | Chains: E
40S Ribosomal Protein S4X protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 23 1796
95 % 4 28 1732 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 35 1394
70 % 40 104 319
50 % 42 117 325
40 % 42 117 357
30 % 42 121 345
Entity #6 | Chains: F
40S Ribosomal Protein S5 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 36 1107
95 % 4 36 1330 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 36 1354
70 % 41 113 294
50 % 43 122 298
40 % 44 127 318
30 % 44 127 327
Entity #7 | Chains: G
40S Ribosomal Protein S6 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 35 1144
95 % 4 35 1388 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 4 35 1393
70 % 4 37 1341
50 % 41 113 365
40 % 41 114 390
30 % 41 114 393
Entity #8 | Chains: H
40S Ribosomal Protein S7 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 35 1143
95 % 4 35 1387
90 % 4 35 1414
70 % 4 36 1390
50 % 40 108 374
40 % 40 112 393
30 % 42 116 368
Entity #9 | Chains: I
40S Ribosomal Protein S8 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 35 1175
95 % 4 35 1400 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 35 1425
70 % 4 36 1382
50 % 42 116 336
40 % 42 116 366
30 % 42 116 370

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures