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Rabbit 40S ribosomal subunit in complex with eIF1.
Sequence Clustering and Redundancy Reduction Results
4KZX
Sequence Clusters for the Sequence Entities in PDB 4KZX
Entity #1: Chains: A - 40S ribosomal protein SA protein, length: 295 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 20749
95% 2 11 4892
90% 2 11 4902
70% 2 11 4827
50% 21 43 688
40% 23 45 634
30% 23 45 630
Entity #10: Chains: J - 40S Ribosomal protein S9 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 4354
95% 2 11 4963
90% 2 11 4978
70% 21 46 570
50% 23 49 539
40% 23 51 555
30% 23 51 553
Entity #11: Chains: K - 40S ribosomal protein S10 protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 9 5550
95% 2 11 4986
90% 2 11 5003
70% 2 11 4916
50% 2 12 4336
40% 2 13 3641
30% 2 13 3354
Entity #12: Chains: L - 40S ribosomal protein S11 protein, length: 158 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 12 4012
95% 2 12 4604
90% 2 12 4619
70% 21 43 616
50% 23 48 555
40% 23 48 586
30% 23 48 584
Entity #13: Chains: M - 40S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 8 7327
95% 2 11 5020
90% 2 11 5036
70% 2 11 4943
50% 20 39 766
40% 20 41 760
30% 22 44 666
Entity #14: Chains: N - 40S ribosomal protein S13 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 4377
95% 2 11 4995
90% 2 11 5012
70% 21 44 603
50% 23 47 569
40% 23 49 578
30% 23 49 574
Entity #15: Chains: O - 40S ribosomal protein S14 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 12 4036
95% 2 12 4620
90% 2 12 4635
70% 23 53 451
50% 25 57 430
40% 247 333 35
30% 247 333 45
Entity #16: Chains: P - 40S ribosomal protein S15 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 22478
95% 2 12 4637
90% 2 12 4653
70% 2 14 3685
50% 21 45 662
40% 23 54 522
30% 23 54 527
Entity #17: Chains: Q - 40S ribosomal protein S16 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 12 4051
95% 2 12 4634
90% 2 12 4649
70% 2 13 3950
50% 23 51 517
40% 23 53 535
30% 245 329 50
Entity #18: Chains: R - 40S ribosomal protein S17 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 12155
95% 2 11 5013
90% 2 11 5029
70% 2 12 4606
50% 23 48 557
40% 23 48 589
30% 23 48 588
Entity #19: Chains: S - 40S ribosomal protein S18 protein, length: 152 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 12 4035
95% 2 12 4619
90% 2 12 4634
70% 21 45 586
50% 23 51 516
40% 23 53 534
30% 248 334 49
Entity #2: Chains: B - 40S ribosomal protein S3a protein, length: 264 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 21044
95% 2 11 4909
90% 2 11 4921
70% 2 11 4843
50% 22 42 655
40% 22 43 673
30% 22 43 679
Entity #20: Chains: T - 40S ribosomal protein S19 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 22479
95% 2 11 5000
90% 2 11 5016
70% 2 11 4930
50% 21 44 678
40% 22 47 666
30% 24 50 562
Entity #21: Chains: U - 40S ribosomal protein S20 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 10 5102
95% 2 12 4694
90% 2 12 4707
70% 2 13 3972
50% 23 47 572
40% 23 51 557
30% 251 333 46
Entity #22: Chains: V - 40S ribosomal protein S21 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 23206
95% 2 3 19346
90% 2 11 5078
70% 2 12 4688
50% 20 44 695
40% 20 44 717
30% 20 44 720
Entity #23: Chains: W - 40S ribosomal protein S15A protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 12 4083
95% 2 12 4670
90% 2 12 4682
70% 23 51 470
50% 24 54 483
40% 24 54 511
30% 251 338 44
Entity #24: Chains: X - 40S ribosomal protein S23 protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 12 4059
95% 2 14 3700
90% 2 15 3461
70% 23 55 437
50% 23 57 466
40% 23 57 493
30% 23 57 503
Entity #25: Chains: Y - 40S ribosomal protein S24 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 22611
95% 2 11 5017
90% 2 11 5033
70% 2 12 4611
50% 20 45 679
40% 20 45 705
30% 20 45 704
Entity #26: Chains: Z - 40S ribosomal protein S25 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 4398
95% 2 11 5027
90% 2 11 5045
70% 2 12 4625
50% 21 42 709
40% 21 44 707
30% 21 44 707
Entity #27: Chains: a - 40S ribosomal protein S26 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 22837
95% 2 11 5038
90% 2 11 5053
70% 2 12 4648
50% 3 24 1878
40% 5 26 1520
30% 5 26 1471
Entity #28: Chains: b - 40S ribosomal protein S27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 4426
95% 2 11 5064
90% 2 11 5077
70% 20 42 653
50% 22 46 612
40% 22 46 644
30% 22 46 638
Entity #29: Chains: c - 40S ribosomal protein S28 protein, length: 69 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 4435
95% 2 11 5073
90% 2 11 5088
70% 21 44 607
50% 23 49 547
40% 23 49 581
30% 23 49 579
Entity #3: Chains: C - 40S ribosomal protein S2 protein, length: 278 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 20896
95% 2 3 17632
90% 2 9 5961
70% 2 10 5261
50% 21 42 700
40% 21 42 722
30% 21 42 725
Entity #30: Chains: d - 40S ribosomal protein S29 protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 10 5186
95% 2 10 5773
90% 2 12 4782
70% 21 45 589
50% 23 50 528
40% 23 50 567
30% 23 50 564
Entity #31: Chains: e - 40S ribosomal protein S30 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 22612
95% 2 5 11556
90% 2 5 11370
70% 2 5 10756
50% 2 6 8573
40% 2 6 7813
30% 2 6 6885
Entity #32: Chains: f - 40S ribosomal protein S27A protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 10 5006
95% 2 10 5603
90% 2 10 5605
70% 3 20 2286
50% 3 20 2309
40% 3 21 2215
30% 3 21 2075
Entity #33: Chains: g - 40S ribosomal protein RACK1 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 13 2692
95% 3 13 3349
90% 3 13 3383
70% 4 15 2888
50% 26 51 472
40% 28 53 465
30% 28 53 474
Entity #34: Chains: i - 18S ribosomal RNA rna, length: 1863 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #35: Chains: l - Eukaryotic translation initiation factor 1 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 36640
95% 1 2 27616
90% 1 2 26543
70% 1 2 23858
50% 1 5 9738
40% 1 5 8894
30% 1 5 7786
Entity #4: Chains: D - 40S ribosomal protein S3 protein, length: 243 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 21253
95% 2 12 4418
90% 2 12 4443
70% 2 13 3890
50% 22 48 620
40% 24 50 563
30% 24 51 552
Entity #5: Chains: E - 40S ribosomal protein S4X protein, length: 263 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 21059
95% 2 6 9416
90% 2 11 4922
70% 20 42 649
50% 22 46 600
40% 22 46 636
30% 22 48 599
Entity #6: Chains: F - 40S ribosomal protein S5 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 12 3886
95% 2 12 4498
90% 2 12 4519
70% 21 46 568
50% 23 52 503
40% 24 55 509
30% 24 55 518
Entity #7: Chains: G - 40S ribosomal protein S6 protein, length: 249 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 4313
95% 2 11 4918
90% 2 11 4929
70% 2 12 4403
50% 20 43 702
40% 20 43 726
30% 20 43 728
Entity #8: Chains: H - 40S ribosomal protein S7 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 4353
95% 2 11 4962
90% 2 11 4977
70% 2 12 4496
50% 20 41 731
40% 20 42 744
30% 22 45 648
Entity #9: Chains: I - 40S ribosomal protein S8 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 21770
95% 2 11 4954
90% 2 11 4967
70% 2 11 4882
50% 22 45 622
40% 22 45 650
30% 22 45 645
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.