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Rabbit 40S ribosomal subunit in complex with eIF1.
Sequence Clustering and Redundancy Reduction Results
4KZX
Sequence Clusters for the Sequence Entities in PDB 4KZX
Entity #1: Chains: A - 40S ribosomal protein SA protein, length: 295 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 21483
95% 2 14 3747
90% 2 14 3786
70% 2 14 3742
50% 21 49 639
40% 23 51 594
30% 23 51 592
Entity #10: Chains: J - 40S Ribosomal protein S9 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 19 2062
95% 2 19 2644
90% 2 19 2680
70% 23 59 428
50% 23 60 468
40% 23 62 486
30% 23 62 494
Entity #11: Chains: K - 40S ribosomal protein S10 protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 12 4165
95% 2 14 3854
90% 2 14 3882
70% 2 14 3835
50% 2 15 3460
40% 2 16 3138
30% 2 16 2917
Entity #12: Chains: L - 40S ribosomal protein S11 protein, length: 158 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 20 1957
95% 2 20 2519
90% 2 20 2548
70% 21 54 504
50% 23 59 479
40% 23 59 510
30% 23 59 519
Entity #13: Chains: M - 40S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 13 3450
95% 2 19 2670
90% 2 19 2708
70% 2 19 2711
50% 20 50 645
40% 20 52 647
30% 22 55 566
Entity #14: Chains: N - 40S ribosomal protein S13 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 19 2074
95% 2 19 2657
90% 2 19 2694
70% 21 55 490
50% 23 58 487
40% 23 60 501
30% 23 60 509
Entity #15: Chains: O - 40S ribosomal protein S14 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 20 1963
95% 2 20 2523
90% 2 21 2353
70% 23 64 400
50% 25 68 387
40% 268 369 30
30% 268 370 38
Entity #16: Chains: P - 40S ribosomal protein S15 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 23291
95% 2 15 3577
90% 2 15 3616
70% 2 17 3085
50% 21 51 610
40% 23 63 483
30% 23 63 489
Entity #17: Chains: Q - 40S ribosomal protein S16 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 20 1969
95% 2 20 2528
90% 2 20 2556
70% 2 22 2254
50% 23 62 454
40% 23 64 476
30% 266 364 46
Entity #18: Chains: R - 40S ribosomal protein S17 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 19 2083
95% 2 19 2666
90% 2 19 2703
70% 2 20 2582
50% 23 59 481
40% 23 59 512
30% 23 59 521
Entity #19: Chains: S - 40S ribosomal protein S18 protein, length: 152 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 20 1962
95% 2 20 2521
90% 2 20 2550
70% 21 56 475
50% 23 62 453
40% 23 64 475
30% 269 369 44
Entity #2: Chains: B - 40S ribosomal protein S3a protein, length: 264 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 21794
95% 2 14 3771
90% 2 14 3809
70% 2 14 3768
50% 22 48 605
40% 22 49 629
30% 22 49 623
Entity #20: Chains: T - 40S ribosomal protein S19 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 23292
95% 2 19 2660
90% 2 19 2696
70% 2 19 2707
50% 21 55 559
40% 22 58 560
30% 24 61 500
Entity #21: Chains: U - 40S ribosomal protein S20 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 13 3459
95% 2 15 3593
90% 2 15 3633
70% 2 16 3406
50% 23 58 489
40% 23 62 488
30% 272 368 40
Entity #22: Chains: V - 40S ribosomal protein S21 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 24065
95% 2 19 2683
90% 2 19 2721
70% 2 20 2606
50% 20 55 578
40% 20 55 614
30% 20 55 606
Entity #23: Chains: W - 40S ribosomal protein S15A protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 20 1980
95% 2 20 2537
90% 2 20 2563
70% 23 62 411
50% 24 65 428
40% 24 65 461
30% 272 373 37
Entity #24: Chains: X - 40S ribosomal protein S23 protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 18 2273
95% 2 22 2225
90% 2 23 2129
70% 23 66 387
50% 23 68 419
40% 23 68 446
30% 23 68 455
Entity #25: Chains: Y - 40S ribosomal protein S24 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 23435
95% 2 19 2669
90% 2 19 2706
70% 2 20 2584
50% 20 56 561
40% 20 56 599
30% 20 56 595
Entity #26: Chains: Z - 40S ribosomal protein S25 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 14 3230
95% 2 14 3900
90% 2 14 3924
70% 2 15 3582
50% 21 48 660
40% 21 50 665
30% 21 50 661
Entity #27: Chains: a - 40S ribosomal protein S26 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 23679
95% 2 13 4140
90% 2 13 4176
70% 2 14 3886
50% 3 29 1601
40% 5 31 1346
30% 5 31 1319
Entity #28: Chains: b - 40S ribosomal protein S27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 19 2093
95% 2 19 2681
90% 2 19 2719
70% 20 53 528
50% 22 57 508
40% 22 57 539
30% 22 57 546
Entity #29: Chains: c - 40S ribosomal protein S28 protein, length: 69 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 16 2758
95% 2 16 3438
90% 2 19 2724
70% 21 55 497
50% 23 60 471
40% 23 60 504
30% 23 60 513
Entity #3: Chains: C - 40S ribosomal protein S2 protein, length: 278 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 21638
95% 2 3 18265
90% 2 12 4559
70% 2 13 4035
50% 21 48 654
40% 21 48 684
30% 21 48 680
Entity #30: Chains: d - 40S ribosomal protein S29 protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 20 2007
95% 2 20 2563
90% 2 20 2591
70% 21 56 477
50% 23 61 463
40% 23 61 494
30% 23 61 503
Entity #31: Chains: e - 40S ribosomal protein S30 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 23436
95% 2 5 11970
90% 2 5 11758
70% 2 5 11091
50% 2 6 8832
40% 2 6 8048
30% 2 6 7075
Entity #32: Chains: f - 40S ribosomal protein S27A protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 12 4199
95% 2 12 4802
90% 2 12 4821
70% 3 25 1832
50% 3 25 1863
40% 3 26 1812
30% 3 26 1727
Entity #33: Chains: g - 40S ribosomal protein RACK1 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1569
95% 3 21 2073
90% 3 21 2101
70% 4 23 1866
50% 26 62 421
40% 28 64 420
30% 28 64 429
Entity #34: Chains: i - 18S ribosomal RNA rna, length: 1863 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #35: Chains: l - Eukaryotic translation initiation factor 1 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 37835
95% 1 2 28458
90% 1 2 27315
70% 1 2 24506
50% 1 8 6843
40% 1 8 6311
30% 1 8 5612
Entity #4: Chains: D - 40S ribosomal protein S3 protein, length: 243 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 10080
95% 2 20 2469
90% 2 20 2501
70% 22 58 462
50% 22 59 515
40% 24 61 491
30% 24 62 492
Entity #5: Chains: E - 40S ribosomal protein S4X protein, length: 263 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 21808
95% 2 13 4058
90% 2 19 2649
70% 20 53 524
50% 22 57 504
40% 22 57 535
30% 22 59 526
Entity #6: Chains: F - 40S ribosomal protein S5 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 20 1934
95% 2 20 2493
90% 2 20 2524
70% 21 57 466
50% 23 63 443
40% 24 66 459
30% 24 66 466
Entity #7: Chains: G - 40S ribosomal protein S6 protein, length: 249 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 18 2215
95% 2 19 2626
90% 2 19 2658
70% 2 20 2521
50% 20 54 583
40% 20 54 622
30% 20 54 614
Entity #8: Chains: H - 40S ribosomal protein S7 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 19 2061
95% 2 19 2643
90% 2 19 2679
70% 2 20 2551
50% 20 52 606
40% 20 53 630
30% 22 56 555
Entity #9: Chains: I - 40S ribosomal protein S8 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 22561
95% 2 19 2636
90% 2 19 2672
70% 2 19 2691
50% 22 56 517
40% 22 56 545
30% 22 56 554
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.