Sequence Similarity Clusters for the Entities in PDB 4KZX

Entity #1 | Chains: A
40S ribosomal protein SA protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 35 1175
95 % 3 35 1401 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 35 1422
70 % 3 35 1435
50 % 3 36 1444
40 % 31 93 473
30 % 31 93 477
Entity #10 | Chains: J
40S Ribosomal protein S9 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 44 918
95 % 3 44 1130 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 44 1159
70 % 42 124 272
50 % 42 129 290
40 % 42 133 306
30 % 42 133 318
Entity #11 | Chains: K
40S ribosomal protein S10 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 34 1223
95 % 3 34 1448 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1472
70 % 3 34 1482
50 % 3 36 1438
40 % 3 36 1416
30 % 3 36 1408
Entity #12 | Chains: L
40S ribosomal protein S11 protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 45 892
95 % 3 45 1087 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 45 1115
70 % 40 114 298
50 % 42 128 295
40 % 42 128 326
30 % 42 128 333
Entity #13 | Chains: M
40S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 33 1260
95 % 3 42 1181 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 42 1204
70 % 3 42 1229
50 % 40 104 397
40 % 40 113 398
30 % 42 115 382
Entity #14 | Chains: N
40S ribosomal protein S13 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 44 911
95 % 3 44 1118 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 44 1146
70 % 40 123 283
50 % 42 126 300
40 % 42 130 318
30 % 42 130 326
Entity #15 | Chains: O
40S ribosomal protein S14 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 37 1114
95 % 3 37 1331 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 39 1285
70 % 42 123 273
50 % 44 130 269
40 % 351 594 19
30 % 351 594 33
Entity #16 | Chains: P
40S ribosomal protein S15 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 38 1074
95 % 3 38 1286 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 38 1308
70 % 41 105 324
50 % 41 118 351
40 % 43 125 335
30 % 43 125 343
Entity #17 | Chains: Q
40S ribosomal protein S16 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 43 948
95 % 3 43 1156 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 43 1183
70 % 3 46 1126
50 % 42 128 293
40 % 42 132 312
30 % 349 589 35
Entity #18 | Chains: R
40S ribosomal protein S17 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 44 902
95 % 3 44 1104 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 44 1158
70 % 3 45 1161
50 % 45 123 319
40 % 45 123 352
30 % 45 123 356
Entity #19 | Chains: S
40S ribosomal protein S18 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 45 896
95 % 3 45 1092 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 45 1119
70 % 40 111 306
50 % 42 124 304
40 % 42 129 321
30 % 352 591 37
Entity #2 | Chains: B
40S ribosomal protein S3a protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 26107
95 % 3 37 1347 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 37 1371
70 % 3 37 1388
50 % 30 92 448
40 % 30 96 465
30 % 30 97 469
Entity #20 | Chains: T
40S ribosomal protein S19 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 11275
95 % 3 44 1111 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 44 1138
70 % 3 44 1171
50 % 40 110 372
40 % 41 115 384
30 % 43 118 361
Entity #21 | Chains: U
40S ribosomal protein S20 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 33 1250
95 % 3 35 1416 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 35 1438
70 % 3 36 1416
50 % 42 115 344
40 % 356 585 20
30 % 356 587 34
Entity #22 | Chains: V
40S ribosomal protein S21 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 16096
95 % 3 43 1134 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 43 1162
70 % 3 44 1177
50 % 39 111 371
40 % 39 111 401
30 % 39 111 403
Entity #23 | Chains: W
40S ribosomal protein S15A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 45 883
95 % 3 45 1077 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 45 1108
70 % 43 132 257
50 % 44 137 265
40 % 356 607 18
30 % 356 607 32
Entity #24 | Chains: X
40S ribosomal protein S23 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 43 926
95 % 3 47 1032 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 48 1041
70 % 42 133 252
50 % 42 138 264
40 % 42 138 292
30 % 42 138 304
Entity #25 | Chains: Y
40S ribosomal protein S24 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 42 975
95 % 3 44 1109 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 44 1136
70 % 3 45 1144
50 % 39 123 331
40 % 39 123 364
30 % 39 123 362
Entity #26 | Chains: Z
40S ribosomal protein S25 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 37 1106
95 % 3 37 1319 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 37 1341
70 % 3 38 1340
50 % 3 38 1389
40 % 29 87 512
30 % 29 88 503
Entity #27 | Chains: a
40S ribosomal protein S26 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27451
95 % 3 28 1769 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 28 1812
70 % 3 28 1820
50 % 6 56 903
40 % 6 56 924
30 % 6 56 911
Entity #28 | Chains: b
40S ribosomal protein S27 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 44 908
95 % 3 44 1125 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 44 1152
70 % 39 114 302
50 % 41 121 318
40 % 41 121 355
30 % 41 122 352
Entity #29 | Chains: c
40S ribosomal protein S28 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 41 1002
95 % 3 41 1209 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 44 1140
70 % 40 120 289
50 % 42 127 297
40 % 42 127 328
30 % 42 127 336
Entity #3 | Chains: C
40S ribosomal protein S2 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 26106
95 % 2 3 23013 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 32 1537
70 % 3 33 1506
50 % 3 33 1561
40 % 3 33 1544
30 % 3 33 1531
Entity #30 | Chains: d
40S ribosomal protein S29 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 42 989
95 % 3 42 1194 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 42 1217
70 % 40 106 319
50 % 42 119 326
40 % 42 123 339
30 % 42 123 347
Entity #31 | Chains: e
40S ribosomal protein S30 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 13 5038
95 % 2 13 5353 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 17 3054
70 % 3 17 3004
50 % 3 18 2809
40 % 3 18 2730
30 % 3 18 2530
Entity #32 | Chains: f
40S ribosomal protein S27A protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1780
95 % 3 32 1538 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 32 1565
70 % 5 54 927
50 % 5 58 921
40 % 5 58 932
30 % 5 58 921
Entity #33 | Chains: g
40S ribosomal protein RACK1 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 44 871
95 % 4 44 1063 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 44 1092
70 % 5 46 1094
50 % 47 118 314
40 % 49 120 329
30 % 49 121 332
Entity #34 | Chains: i
18S ribosomal RNA rna, length: 1863 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #35 | Chains: l
Eukaryotic translation initiation factor 1 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 44629
95 % 1 2 37260 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 1 2 35555
70 % 1 2 31585
50 % 1 9 7225
40 % 1 9 6677
30 % 1 9 5846
Entity #4 | Chains: D
40S ribosomal protein S3 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 40 1018
95 % 3 40 1225 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 40 1245
70 % 41 109 311
50 % 41 116 354
40 % 43 122 341
30 % 43 123 346
Entity #5 | Chains: E
40S ribosomal protein S4X protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 31 1310
95 % 3 37 1308 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 44 1132
70 % 39 113 303
50 % 41 126 302
40 % 41 126 331
30 % 41 130 328
Entity #6 | Chains: F
40S ribosomal protein S5 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 45 878
95 % 3 45 1073 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 45 1104
70 % 40 122 286
50 % 42 131 283
40 % 43 136 295
30 % 43 136 310
Entity #7 | Chains: G
40S ribosomal protein S6 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 44 904
95 % 3 44 1116 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 3 44 1131
70 % 3 46 1118
50 % 40 122 337
40 % 40 123 367
30 % 40 123 368
Entity #8 | Chains: H
40S ribosomal protein S7 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 44 903
95 % 3 44 1115 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 44 1143
70 % 3 45 1148
50 % 39 117 355
40 % 39 121 368
30 % 41 125 344
Entity #9 | Chains: I
40S ribosomal protein S8 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 44 914
95 % 3 44 1122 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 44 1149
70 % 3 45 1138
50 % 41 125 305
40 % 41 125 336
30 % 41 125 345

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures