Sequence Similarity Clusters for the Entities in PDB 4KZX

Entity #1 | Chains: A
40S ribosomal protein SA protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27218
95 % 3 28 1701 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 28 1741
70 % 3 28 1757
50 % 29 83 460
40 % 31 85 481
30 % 31 85 473
Entity #10 | Chains: J
40S Ribosomal protein S9 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 34 1043
95 % 3 34 1406 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1432
70 % 41 112 289
50 % 41 117 313
40 % 41 121 319
30 % 41 121 324
Entity #11 | Chains: K
40S ribosomal protein S10 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 26 1383
95 % 3 28 1712 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 28 1754
70 % 3 28 1771
50 % 3 29 1757
40 % 3 30 1711
30 % 3 30 1674
Entity #12 | Chains: L
40S ribosomal protein S11 protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 35 1017
95 % 3 35 1376 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 35 1403
70 % 39 102 319
50 % 41 116 317
40 % 41 116 331
30 % 41 116 341
Entity #13 | Chains: M
40S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 25 1470
95 % 3 34 1415
90 % 3 34 1442
70 % 3 34 1448
50 % 39 94 413
40 % 39 103 403
30 % 41 105 384
Entity #14 | Chains: N
40S ribosomal protein S13 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 34 1047
95 % 3 34 1409
90 % 3 34 1436
70 % 39 111 299
50 % 41 114 324
40 % 41 118 326
30 % 41 118 335
Entity #15 | Chains: O
40S ribosomal protein S14 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 27 1339
95 % 3 27 1800 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 29 1708
70 % 41 111 292
50 % 43 126 272
40 % 343 572 19
30 % 343 572 33
Entity #16 | Chains: P
40S ribosomal protein S15 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 11 5936
95 % 3 29 1673 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 29 1712
70 % 3 33 1484
50 % 40 106 373
40 % 42 113 346
30 % 42 113 354
Entity #17 | Chains: Q
40S ribosomal protein S16 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 35 1023
95 % 3 35 1382
90 % 3 35 1409
70 % 3 38 1301
50 % 41 118 311
40 % 41 122 316
30 % 341 561 35
Entity #18 | Chains: R
40S ribosomal protein S17 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 34 1050
95 % 3 34 1413 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1440
70 % 3 35 1422
50 % 44 111 343
40 % 44 111 362
30 % 44 111 367
Entity #19 | Chains: S
40S ribosomal protein S18 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 35 1022
95 % 3 35 1381 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 35 1408
70 % 39 99 327
50 % 41 112 331
40 % 41 117 330
30 % 344 561 36
Entity #2 | Chains: B
40S ribosomal protein S3a protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27590
95 % 3 28 1704 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 28 1745
70 % 3 28 1761
50 % 30 82 455
40 % 30 86 482
30 % 30 87 467
Entity #20 | Chains: T
40S ribosomal protein S19 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 23374
95 % 3 34 1410
90 % 3 34 1437
70 % 3 34 1446
50 % 39 97 394
40 % 40 102 398
30 % 42 106 375
Entity #21 | Chains: U
40S ribosomal protein S20 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 27 1347
95 % 3 29 1677 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 29 1718
70 % 3 30 1663
50 % 41 106 356
40 % 41 112 347
30 % 348 560 34
Entity #22 | Chains: V
40S ribosomal protein S21 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 24810
95 % 3 34 1420 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1448
70 % 3 35 1426
50 % 38 100 391
40 % 38 100 419
30 % 38 100 418
Entity #23 | Chains: W
40S ribosomal protein S15A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 35 1024
95 % 3 35 1384 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 35 1411
70 % 42 120 276
50 % 43 125 287
40 % 43 125 306
30 % 348 577 32
Entity #24 | Chains: X
40S ribosomal protein S23 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 33 1077
95 % 3 37 1285 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 38 1273
70 % 41 121 273
50 % 41 126 286
40 % 41 126 305
30 % 41 126 311
Entity #25 | Chains: Y
40S ribosomal protein S24 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 23713
95 % 3 34 1414 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1441
70 % 3 35 1423
50 % 38 111 355
40 % 38 112 367
30 % 38 112 371
Entity #26 | Chains: Z
40S ribosomal protein S25 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 28 1281
95 % 3 28 1716 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 28 1757
70 % 3 29 1731
50 % 29 76 507
40 % 29 80 519
30 % 29 80 517
Entity #27 | Chains: a
40S ribosomal protein S26 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 29957
95 % 3 26 1858 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 26 1901
70 % 3 27 1871
50 % 4 53 989
40 % 6 55 928
30 % 6 55 914
Entity #28 | Chains: b
40S ribosomal protein S27 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 34 1052
95 % 3 34 1419 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1447
70 % 38 102 320
50 % 40 109 346
40 % 40 109 364
30 % 40 110 364
Entity #29 | Chains: c
40S ribosomal protein S28 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 31 1171
95 % 3 31 1573 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1450
70 % 39 108 307
50 % 41 115 323
40 % 41 115 335
30 % 41 115 343
Entity #3 | Chains: C
40S ribosomal protein S2 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27401
95 % 2 3 22928 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 26 1870
70 % 3 27 1827
50 % 29 82 464
40 % 29 82 506
30 % 29 82 503
Entity #30 | Chains: d
40S ribosomal protein S29 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 35 1029
95 % 3 35 1388 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 35 1415
70 % 39 97 334
50 % 41 110 336
40 % 41 114 337
30 % 41 114 347
Entity #31 | Chains: e
40S ribosomal protein S30 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 11 5953
95 % 3 15 3299 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 15 3339
70 % 3 15 3299
50 % 3 16 3014
40 % 3 16 2965
30 % 3 16 2775
Entity #32 | Chains: f
40S ribosomal protein S27A protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 2068
95 % 3 25 1969 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 25 2013
70 % 5 47 1043
50 % 5 48 1065
40 % 5 51 1036
30 % 5 51 1016
Entity #33 | Chains: g
40S ribosomal protein RACK1 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 36 916
95 % 4 36 1237 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 36 1266
70 % 5 38 1223
50 % 46 108 333
40 % 48 110 328
30 % 48 111 333
Entity #34 | Chains: i
18S ribosomal RNA rna, length: 1863 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #35 | Chains: l
Eukaryotic translation initiation factor 1 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 47348
95 % 1 2 35403 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 1 2 33802
70 % 1 2 30043
50 % 1 9 7233
40 % 1 9 6727
30 % 1 9 6001
Entity #4 | Chains: D
40S ribosomal protein S3 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 15 3734
95 % 3 35 1366 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 35 1392
70 % 40 103 317
50 % 40 107 364
40 % 42 110 351
30 % 42 113 350
Entity #5 | Chains: E
40S ribosomal protein S4X protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 20574
95 % 3 27 1772 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1425
70 % 38 101 322
50 % 40 114 325
40 % 40 114 339
30 % 40 118 338
Entity #6 | Chains: F
40S ribosomal protein S5 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 35 1011
95 % 3 35 1373 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 35 1397
70 % 39 110 303
50 % 41 119 303
40 % 42 124 308
30 % 42 124 314
Entity #7 | Chains: G
40S ribosomal protein S6 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 33 1066
95 % 3 34 1400 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 3 34 1426
70 % 3 36 1363
50 % 39 110 362
40 % 39 111 373
30 % 39 111 377
Entity #8 | Chains: H
40S ribosomal protein S7 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 34 1042
95 % 3 34 1405 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1431
70 % 3 35 1413
50 % 38 101 384
40 % 38 105 389
30 % 40 113 353
Entity #9 | Chains: I
40S ribosomal protein S8 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 22004
95 % 3 34 1403 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1429
70 % 3 34 1441
50 % 40 113 330
40 % 40 113 345
30 % 40 113 352

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures