Sequence Similarity Clusters for the Entities in PDB 4KZX

Entity #1 | Chains: A
40S ribosomal protein SA protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 26408
95 % 3 27 1701 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 27 1739
70 % 3 27 1761
50 % 29 79 465
40 % 31 81 480
30 % 31 81 477
Entity #10 | Chains: J
40S Ribosomal protein S9 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 33 1017
95 % 3 33 1406 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1428
70 % 37 106 286
50 % 37 109 317
40 % 37 113 324
30 % 37 113 334
Entity #11 | Chains: K
40S ribosomal protein S10 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 25 1404
95 % 3 27 1734
90 % 3 27 1770
70 % 3 27 1793
50 % 3 28 1746
40 % 3 29 1698
30 % 3 29 1661
Entity #12 | Chains: L
40S ribosomal protein S11 protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 34 993
95 % 3 34 1361
90 % 3 34 1382
70 % 35 96 324
50 % 37 108 323
40 % 37 108 344
30 % 37 108 351
Entity #13 | Chains: M
40S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 25 1410
95 % 3 33 1416 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1439
70 % 3 33 1436
50 % 35 88 424
40 % 35 94 433
30 % 37 97 411
Entity #14 | Chains: N
40S ribosomal protein S13 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 33 1026
95 % 3 33 1412 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1435
70 % 35 103 305
50 % 37 106 330
40 % 37 110 334
30 % 37 110 341
Entity #15 | Chains: O
40S ribosomal protein S14 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 26 1322
95 % 3 26 1786
90 % 3 28 1683
70 % 37 103 297
50 % 39 118 283
40 % 328 546 19
30 % 328 546 31
Entity #16 | Chains: P
40S ribosomal protein S15 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 11 5735
95 % 3 28 1649 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 28 1684
70 % 3 32 1470
50 % 36 98 382
40 % 38 105 358
30 % 38 105 364
Entity #17 | Chains: Q
40S ribosomal protein S16 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 34 996
95 % 3 34 1364 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1385
70 % 3 37 1303
50 % 37 110 316
40 % 37 114 319
30 % 326 535 34
Entity #18 | Chains: R
40S ribosomal protein S17 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 33 1027
95 % 3 33 1414 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1437
70 % 3 34 1400
50 % 40 104 345
40 % 40 104 371
30 % 40 104 372
Entity #19 | Chains: S
40S ribosomal protein S18 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 34 995
95 % 3 34 1363
90 % 3 34 1384
70 % 35 93 340
50 % 37 104 338
40 % 37 109 338
30 % 329 535 35
Entity #2 | Chains: B
40S ribosomal protein S3a protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 26779
95 % 3 27 1712 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 27 1749
70 % 3 27 1770
50 % 30 80 447
40 % 30 82 481
30 % 30 83 473
Entity #20 | Chains: T
40S ribosomal protein S19 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 22648
95 % 3 33 1413 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1436
70 % 3 33 1435
50 % 35 91 406
40 % 36 96 409
30 % 38 100 378
Entity #21 | Chains: U
40S ribosomal protein S20 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 26 1326
95 % 3 28 1654 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 28 1689
70 % 3 29 1668
50 % 37 99 356
40 % 37 105 353
30 % 333 535 32
Entity #22 | Chains: V
40S ribosomal protein S21 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 24058
95 % 3 33 1420 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1442
70 % 3 34 1406
50 % 34 94 399
40 % 34 94 431
30 % 34 94 435
Entity #23 | Chains: W
40S ribosomal protein S15A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 34 999
95 % 3 34 1366 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1387
70 % 38 112 279
50 % 39 117 300
40 % 39 117 315
30 % 333 551 30
Entity #24 | Chains: X
40S ribosomal protein S23 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 32 1050
95 % 3 36 1282 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 37 1273
70 % 37 113 275
50 % 37 118 295
40 % 37 118 312
30 % 37 118 323
Entity #25 | Chains: Y
40S ribosomal protein S24 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 22987
95 % 3 33 1415 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1438
70 % 3 34 1401
50 % 34 103 358
40 % 34 104 382
30 % 34 104 383
Entity #26 | Chains: Z
40S ribosomal protein S25 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 27 1291
95 % 3 27 1744 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 27 1779
70 % 3 28 1708
50 % 29 74 493
40 % 29 76 522
30 % 29 76 523
Entity #27 | Chains: a
40S ribosomal protein S26 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 29086
95 % 3 25 1904 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 25 1949
70 % 3 26 1857
50 % 4 50 1016
40 % 6 52 946
30 % 6 52 920
Entity #28 | Chains: b
40S ribosomal protein S27 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 33 1032
95 % 3 33 1419 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1441
70 % 34 96 329
50 % 36 101 352
40 % 36 101 380
30 % 36 102 373
Entity #29 | Chains: c
40S ribosomal protein S28 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 30 1153
95 % 3 30 1569 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1444
70 % 35 102 307
50 % 37 109 319
40 % 37 109 339
30 % 37 109 347
Entity #3 | Chains: C
40S ribosomal protein S2 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 26592
95 % 2 3 22307 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 25 1902
70 % 3 26 1827
50 % 29 78 472
40 % 29 78 508
30 % 29 78 508
Entity #30 | Chains: d
40S ribosomal protein S29 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 34 1000
95 % 3 34 1370 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1393
70 % 35 92 347
50 % 37 103 339
40 % 37 107 349
30 % 37 107 355
Entity #31 | Chains: e
40S ribosomal protein S30 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 11 5751
95 % 3 15 3171 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 15 3211
70 % 3 15 3183
50 % 3 16 2921
40 % 3 16 2885
30 % 3 16 2695
Entity #32 | Chains: f
40S ribosomal protein S27A protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 23 2063
95 % 3 24 1970 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 24 2017
70 % 4 44 1089
50 % 4 45 1109
40 % 4 46 1108
30 % 4 46 1090
Entity #33 | Chains: g
40S ribosomal protein RACK1 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 35 903
95 % 4 35 1219 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 35 1248
70 % 5 37 1220
50 % 42 101 335
40 % 44 103 333
30 % 44 104 340
Entity #34 | Chains: i
18S ribosomal RNA rna, length: 1863 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #35 | Chains: l
Eukaryotic translation initiation factor 1 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 46019
95 % 1 2 34467 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 1 2 32946
70 % 1 2 29334
50 % 1 9 7037
40 % 1 9 6538
30 % 1 9 5834
Entity #4 | Chains: D
40S ribosomal protein S3 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 15 3589
95 % 3 34 1354 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1377
70 % 36 98 316
50 % 36 100 372
40 % 38 103 362
30 % 38 106 356
Entity #5 | Chains: E
40S ribosomal protein S4X protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 19920
95 % 3 26 1776 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1416
70 % 34 95 331
50 % 36 106 333
40 % 36 106 351
30 % 36 110 346
Entity #6 | Chains: F
40S ribosomal protein S5 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 34 990
95 % 3 34 1358 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1380
70 % 35 104 302
50 % 37 111 314
40 % 38 116 317
30 % 38 116 329
Entity #7 | Chains: G
40S ribosomal protein S6 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 32 1041
95 % 3 33 1395 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 3 33 1418
70 % 3 35 1367
50 % 34 100 378
40 % 34 101 397
30 % 34 101 403
Entity #8 | Chains: H
40S ribosomal protein S7 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 33 1016
95 % 3 33 1405 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1427
70 % 3 34 1398
50 % 34 95 394
40 % 34 99 405
30 % 36 105 363
Entity #9 | Chains: I
40S ribosomal protein S8 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 21298
95 % 3 33 1402 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1425
70 % 3 33 1428
50 % 36 105 337
40 % 36 105 357
30 % 36 105 362

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.