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Rabbit 40S ribosomal subunit in complex with eIF1.
Sequence Clustering and Redundancy Reduction Results
4KZX
Sequence Clusters for the Sequence Entities in PDB 4KZX
Entity #1: Chains: A - 40S ribosomal protein SA protein, length: 295 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 20635
95% 2 11 4865
90% 2 11 4876
70% 2 11 4800
50% 21 42 694
40% 23 44 646
30% 23 44 638
Entity #10: Chains: J - 40S Ribosomal protein S9 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 4323
95% 2 11 4936
90% 2 11 4952
70% 21 45 581
50% 23 48 549
40% 23 50 562
30% 23 50 557
Entity #11: Chains: K - 40S ribosomal protein S10 protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 9 5514
95% 2 11 4960
90% 2 11 4978
70% 2 11 4890
50% 2 12 4308
40% 2 13 3617
30% 2 13 3338
Entity #12: Chains: L - 40S ribosomal protein S11 protein, length: 158 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 12 3983
95% 2 12 4580
90% 2 12 4594
70% 21 43 610
50% 23 48 551
40% 23 48 582
30% 23 48 579
Entity #13: Chains: M - 40S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 8 7281
95% 2 11 4995
90% 2 11 5013
70% 2 11 4918
50% 20 39 761
40% 20 41 754
30% 22 44 662
Entity #14: Chains: N - 40S ribosomal protein S13 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 4347
95% 2 11 4970
90% 2 11 4989
70% 21 44 598
50% 23 47 566
40% 23 49 574
30% 23 49 567
Entity #15: Chains: O - 40S ribosomal protein S14 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 12 4006
95% 2 12 4595
90% 2 12 4609
70% 23 52 455
50% 25 56 435
40% 246 330 35
30% 246 330 47
Entity #16: Chains: P - 40S ribosomal protein S15 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 22344
95% 2 12 4611
90% 2 12 4626
70% 2 14 3664
50% 21 45 659
40% 23 54 519
30% 23 54 526
Entity #17: Chains: Q - 40S ribosomal protein S16 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 12 4020
95% 2 12 4608
90% 2 12 4622
70% 2 13 3928
50% 23 50 524
40% 23 52 543
30% 244 326 51
Entity #18: Chains: R - 40S ribosomal protein S17 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 12091
95% 2 11 4988
90% 2 11 5006
70% 2 12 4580
50% 23 47 568
40% 23 47 601
30% 23 47 601
Entity #19: Chains: S - 40S ribosomal protein S18 protein, length: 152 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 12 4005
95% 2 12 4594
90% 2 12 4608
70% 21 45 582
50% 23 50 523
40% 23 52 541
30% 247 331 49
Entity #2: Chains: B - 40S ribosomal protein S3a protein, length: 264 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 20928
95% 2 11 4882
90% 2 11 4895
70% 2 11 4816
50% 22 42 652
40% 22 43 669
30% 22 43 677
Entity #20: Chains: T - 40S ribosomal protein S19 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 22345
95% 2 11 4975
90% 2 11 4993
70% 2 11 4905
50% 21 43 688
40% 22 46 671
30% 24 49 568
Entity #21: Chains: U - 40S ribosomal protein S20 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 10 5071
95% 2 12 4667
90% 2 12 4679
70% 2 13 3950
50% 23 47 570
40% 23 51 554
30% 250 331 46
Entity #22: Chains: V - 40S ribosomal protein S21 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 23062
95% 2 3 19222
90% 2 11 5054
70% 2 12 4663
50% 20 43 704
40% 20 43 726
30% 20 43 727
Entity #23: Chains: W - 40S ribosomal protein S15A protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 12 4052
95% 2 12 4643
90% 2 12 4654
70% 23 50 475
50% 24 53 488
40% 24 53 521
30% 250 335 44
Entity #24: Chains: X - 40S ribosomal protein S23 protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 12 4028
95% 2 14 3684
90% 2 15 3442
70% 23 54 442
50% 23 56 471
40% 23 56 497
30% 23 56 509
Entity #25: Chains: Y - 40S ribosomal protein S24 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 22475
95% 2 11 4992
90% 2 11 5010
70% 2 12 4585
50% 20 45 674
40% 20 45 701
30% 20 45 701
Entity #26: Chains: Z - 40S ribosomal protein S25 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 4368
95% 2 11 5002
90% 2 11 5022
70% 2 12 4599
50% 2 13 3830
40% 21 43 713
30% 21 43 713
Entity #27: Chains: a - 40S ribosomal protein S26 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 22701
95% 2 11 5013
90% 2 11 5030
70% 2 12 4622
50% 3 24 1864
40% 5 26 1511
30% 5 26 1464
Entity #28: Chains: b - 40S ribosomal protein S27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 4396
95% 2 11 5038
90% 2 11 5053
70% 20 42 646
50% 22 46 610
40% 22 46 640
30% 22 46 633
Entity #29: Chains: c - 40S ribosomal protein S28 protein, length: 69 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 4405
95% 2 11 5048
90% 2 11 5065
70% 21 44 602
50% 23 49 541
40% 23 49 576
30% 23 49 573
Entity #3: Chains: C - 40S ribosomal protein S2 protein, length: 278 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 20782
95% 2 3 17534
90% 2 9 5934
70% 2 10 5237
50% 21 41 711
40% 21 41 734
30% 21 41 732
Entity #30: Chains: d - 40S ribosomal protein S29 protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 10 5156
95% 2 10 5743
90% 2 12 4755
70% 21 45 586
50% 23 49 542
40% 23 49 577
30% 23 49 574
Entity #31: Chains: e - 40S ribosomal protein S30 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 22476
95% 2 5 11508
90% 2 5 11321
70% 2 5 10693
50% 2 6 8534
40% 2 6 7776
30% 2 6 6856
Entity #32: Chains: f - 40S ribosomal protein S27A protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 10 4977
95% 2 10 5574
90% 2 10 5580
70% 3 20 2267
50% 3 20 2291
40% 3 21 2199
30% 3 21 2058
Entity #33: Chains: g - 40S ribosomal protein RACK1 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 13 2676
95% 3 13 3332
90% 3 13 3362
70% 4 15 2872
50% 26 51 469
40% 28 53 462
30% 28 53 473
Entity #34: Chains: i - 18S ribosomal RNA rna, length: 1863 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #35: Chains: l - Eukaryotic translation initiation factor 1 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 36326
95% 1 2 27348
90% 1 2 26290
70% 1 2 23682
50% 1 5 9680
40% 1 5 8836
30% 1 5 7738
Entity #4: Chains: D - 40S ribosomal protein S3 protein, length: 243 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 21133
95% 2 12 4395
90% 2 12 4418
70% 2 13 3870
50% 22 47 630
40% 24 49 571
30% 24 50 555
Entity #5: Chains: E - 40S ribosomal protein S4X protein, length: 263 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 20943
95% 2 6 9367
90% 2 11 4896
70% 20 42 642
50% 22 46 599
40% 22 46 632
30% 22 48 594
Entity #6: Chains: F - 40S ribosomal protein S5 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 12 3859
95% 2 12 4475
90% 2 12 4495
70% 21 45 578
50% 23 51 510
40% 24 54 518
30% 24 54 524
Entity #7: Chains: G - 40S ribosomal protein S6 protein, length: 249 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 4282
95% 2 11 4891
90% 2 11 4903
70% 2 12 4378
50% 20 43 696
40% 20 43 720
30% 20 43 721
Entity #8: Chains: H - 40S ribosomal protein S7 protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 4322
95% 2 11 4935
90% 2 11 4951
70% 2 12 4471
50% 20 41 723
40% 20 42 738
30% 22 45 643
Entity #9: Chains: I - 40S ribosomal protein S8 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 21645
95% 2 11 4927
90% 2 11 4941
70% 2 11 4855
50% 22 45 619
40% 22 45 647
30% 22 45 641
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.