Sequence Similarity Clusters for the Entities in PDB 4KZX

Entity #1 | Chains: A
40S ribosomal protein SA protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 25943
95 % 3 27 1679 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 27 1715
70 % 3 27 1735
50 % 29 77 469
40 % 31 79 480
30 % 31 79 477
Entity #10 | Chains: J
40S Ribosomal protein S9 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 33 1007
95 % 3 33 1389
90 % 3 33 1410
70 % 37 103 292
50 % 37 105 324
40 % 37 109 330
30 % 37 109 340
Entity #11 | Chains: K
40S ribosomal protein S10 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 25 1385
95 % 3 27 1713 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 27 1746
70 % 3 27 1767
50 % 3 28 1720
40 % 3 29 1678
30 % 3 29 1642
Entity #12 | Chains: L
40S ribosomal protein S11 protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 34 983
95 % 3 34 1346 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1365
70 % 35 94 324
50 % 37 104 329
40 % 37 104 349
30 % 37 104 358
Entity #13 | Chains: M
40S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 25 1391
95 % 3 33 1400 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1421
70 % 3 33 1419
50 % 35 88 419
40 % 35 93 430
30 % 37 96 407
Entity #14 | Chains: N
40S ribosomal protein S13 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 33 1016
95 % 3 33 1396
90 % 3 33 1417
70 % 35 96 319
50 % 37 102 333
40 % 37 106 343
30 % 37 106 351
Entity #15 | Chains: O
40S ribosomal protein S14 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 26 1305
95 % 3 26 1762 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 27 1752
70 % 37 100 297
50 % 39 106 308
40 % 327 525 19
30 % 327 525 32
Entity #16 | Chains: P
40S ribosomal protein S15 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 11 5656
95 % 3 28 1625 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 28 1659
70 % 3 30 1577
50 % 36 97 383
40 % 38 103 357
30 % 38 103 363
Entity #17 | Chains: Q
40S ribosomal protein S16 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 34 986
95 % 3 34 1349 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1368
70 % 3 36 1312
50 % 37 106 322
40 % 37 110 328
30 % 325 520 35
Entity #18 | Chains: R
40S ribosomal protein S17 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 33 1017
95 % 3 33 1398 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1419
70 % 3 34 1384
50 % 40 102 345
40 % 40 102 373
30 % 40 102 377
Entity #19 | Chains: S
40S ribosomal protein S18 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 34 985
95 % 3 34 1348 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1367
70 % 35 92 336
50 % 37 102 332
40 % 37 106 344
30 % 328 523 34
Entity #2 | Chains: B
40S ribosomal protein S3a protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 26307
95 % 3 27 1690 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 27 1725
70 % 3 27 1744
50 % 30 78 448
40 % 30 80 481
30 % 30 80 480
Entity #20 | Chains: T
40S ribosomal protein S19 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 22250
95 % 3 33 1397 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1418
70 % 3 33 1418
50 % 35 91 401
40 % 36 96 406
30 % 38 99 376
Entity #21 | Chains: U
40S ribosomal protein S20 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 26 1309
95 % 3 28 1630 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 28 1664
70 % 3 29 1643
50 % 37 99 346
40 % 37 104 351
30 % 332 525 31
Entity #22 | Chains: V
40S ribosomal protein S21 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 23638
95 % 3 33 1404 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1424
70 % 3 34 1390
50 % 34 92 403
40 % 34 92 432
30 % 34 92 432
Entity #23 | Chains: W
40S ribosomal protein S15A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 34 989
95 % 3 34 1351 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1370
70 % 38 108 282
50 % 39 113 306
40 % 39 113 317
30 % 332 538 30
Entity #24 | Chains: X
40S ribosomal protein S23 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 32 1039
95 % 3 36 1267 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 37 1261
70 % 37 110 278
50 % 37 114 303
40 % 37 114 312
30 % 37 114 329
Entity #25 | Chains: Y
40S ribosomal protein S24 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 22579
95 % 3 33 1399 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1420
70 % 3 34 1385
50 % 34 100 370
40 % 34 100 392
30 % 34 100 400
Entity #26 | Chains: Z
40S ribosomal protein S25 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 27 1275
95 % 3 27 1723 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 27 1756
70 % 3 28 1682
50 % 29 74 489
40 % 29 76 513
30 % 29 76 513
Entity #27 | Chains: a
40S ribosomal protein S26 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28566
95 % 3 25 1877 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 25 1924
70 % 3 26 1833
50 % 4 49 1022
40 % 6 51 944
30 % 6 51 925
Entity #28 | Chains: b
40S ribosomal protein S27 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 33 1022
95 % 3 33 1403 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1423
70 % 34 95 326
50 % 36 100 347
40 % 36 100 374
30 % 36 100 378
Entity #29 | Chains: c
40S ribosomal protein S28 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 30 1134
95 % 3 30 1543 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1426
70 % 35 98 310
50 % 37 105 325
40 % 37 105 345
30 % 37 105 354
Entity #3 | Chains: C
40S ribosomal protein S2 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 26125
95 % 2 3 21887 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 25 1879
70 % 3 26 1805
50 % 29 76 478
40 % 29 76 510
30 % 29 76 509
Entity #30 | Chains: d
40S ribosomal protein S29 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 34 990
95 % 3 34 1355 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1376
70 % 35 92 337
50 % 37 101 336
40 % 37 101 364
30 % 37 101 365
Entity #31 | Chains: e
40S ribosomal protein S30 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 11 5672
95 % 3 15 3126 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 15 3169
70 % 3 15 3138
50 % 3 16 2880
40 % 3 16 2842
30 % 3 16 2655
Entity #32 | Chains: f
40S ribosomal protein S27A protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 23 2035
95 % 3 24 1946 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 24 1995
70 % 4 44 1077
50 % 4 44 1118
40 % 4 45 1107
30 % 4 45 1090
Entity #33 | Chains: g
40S ribosomal protein RACK1 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 35 890
95 % 4 35 1205 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 35 1234
70 % 5 37 1205
50 % 42 101 327
40 % 44 103 327
30 % 44 103 336
Entity #34 | Chains: i
18S ribosomal RNA rna, length: 1863 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #35 | Chains: l
Eukaryotic translation initiation factor 1 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 45349
95 % 1 2 33968 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 1 2 32485
70 % 1 2 28983
50 % 1 9 6908
40 % 1 9 6425
30 % 1 9 5731
Entity #4 | Chains: D
40S ribosomal protein S3 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 15 3534
95 % 3 34 1339 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1361
70 % 36 97 312
50 % 36 99 366
40 % 38 101 361
30 % 38 104 357
Entity #5 | Chains: E
40S ribosomal protein S4X protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 19570
95 % 3 26 1753 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1398
70 % 34 93 334
50 % 36 102 334
40 % 36 102 359
30 % 36 106 353
Entity #6 | Chains: F
40S ribosomal protein S5 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 34 981
95 % 3 34 1343 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 34 1363
70 % 35 100 303
50 % 37 107 318
40 % 38 112 320
30 % 38 112 333
Entity #7 | Chains: G
40S ribosomal protein S6 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 32 1030
95 % 3 33 1378 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 3 33 1400
70 % 3 34 1378
50 % 34 97 381
40 % 34 97 405
30 % 34 97 412
Entity #8 | Chains: H
40S ribosomal protein S7 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 33 1006
95 % 3 33 1388 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1409
70 % 3 34 1382
50 % 34 92 400
40 % 34 96 410
30 % 36 101 372
Entity #9 | Chains: I
40S ribosomal protein S8 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 20926
95 % 3 33 1386 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 33 1407
70 % 3 33 1412
50 % 36 101 341
40 % 36 101 371
30 % 36 101 371

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.