Sequence Similarity Clusters for the Entities in PDB 4KZX

Entity #1 | Chains: A
40S ribosomal protein SA protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27575
95 % 3 28 1739 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 28 1778
70 % 3 28 1788
50 % 29 84 463
40 % 31 86 483
30 % 31 86 475
Entity #10 | Chains: J
40S Ribosomal protein S9 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 35 1032
95 % 3 35 1397 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 35 1422
70 % 42 115 287
50 % 42 120 304
40 % 42 124 311
30 % 42 124 317
Entity #11 | Chains: K
40S ribosomal protein S10 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 26 1409
95 % 3 28 1750 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 28 1792
70 % 3 28 1802
50 % 3 29 1781
40 % 3 30 1731
30 % 3 30 1692
Entity #12 | Chains: L
40S ribosomal protein S11 protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 36 994
95 % 3 36 1339 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 36 1360
70 % 40 105 316
50 % 42 119 312
40 % 42 119 331
30 % 42 119 335
Entity #13 | Chains: M
40S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 26 1412
95 % 3 35 1408
90 % 3 35 1434
70 % 3 35 1437
50 % 40 97 408
40 % 40 106 403
30 % 42 108 387
Entity #14 | Chains: N
40S ribosomal protein S13 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 35 1041
95 % 3 35 1403
90 % 3 35 1429
70 % 40 114 294
50 % 42 117 321
40 % 42 121 323
30 % 42 121 328
Entity #15 | Chains: O
40S ribosomal protein S14 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 28 1301
95 % 3 28 1752 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 30 1659
70 % 42 114 291
50 % 44 129 265
40 % 350 584 19
30 % 350 584 33
Entity #16 | Chains: P
40S ribosomal protein S15 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 11 6022
95 % 3 29 1704 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 29 1742
70 % 3 33 1499
50 % 41 109 369
40 % 43 116 347
30 % 43 116 356
Entity #17 | Chains: Q
40S ribosomal protein S16 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 36 996
95 % 3 36 1341
90 % 3 36 1362
70 % 3 39 1288
50 % 42 121 301
40 % 42 125 310
30 % 348 573 36
Entity #18 | Chains: R
40S ribosomal protein S17 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 35 1042
95 % 3 35 1406 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 35 1432
70 % 3 36 1378
50 % 45 114 347
40 % 45 114 363
30 % 45 114 372
Entity #19 | Chains: S
40S ribosomal protein S18 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 36 995
95 % 3 36 1340 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 36 1361
70 % 40 102 324
50 % 42 115 333
40 % 42 120 327
30 % 351 573 37
Entity #2 | Chains: B
40S ribosomal protein S3a protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27945
95 % 3 28 1742 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 28 1782
70 % 3 28 1792
50 % 30 83 458
40 % 30 87 484
30 % 30 88 472
Entity #20 | Chains: T
40S ribosomal protein S19 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 16344
95 % 3 35 1404
90 % 3 35 1430
70 % 3 35 1434
50 % 40 100 393
40 % 41 105 398
30 % 43 109 377
Entity #21 | Chains: U
40S ribosomal protein S20 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 27 1373
95 % 3 29 1711 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 29 1751
70 % 3 30 1688
50 % 42 109 354
40 % 42 115 348
30 % 355 572 34
Entity #22 | Chains: V
40S ribosomal protein S21 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 16712
95 % 3 35 1412 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 35 1438
70 % 3 36 1385
50 % 39 103 389
40 % 39 103 410
30 % 39 103 406
Entity #23 | Chains: W
40S ribosomal protein S15A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 36 997
95 % 3 36 1343 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 36 1365
70 % 43 123 271
50 % 44 128 282
40 % 44 128 298
30 % 355 589 32
Entity #24 | Chains: X
40S ribosomal protein S23 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 34 1064
95 % 3 38 1260 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 39 1257
70 % 42 124 269
50 % 42 129 278
40 % 42 129 295
30 % 42 129 303
Entity #25 | Chains: Y
40S ribosomal protein S24 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 16411
95 % 3 35 1407 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 35 1433
70 % 3 36 1379
50 % 39 114 353
40 % 39 115 367
30 % 39 115 375
Entity #26 | Chains: Z
40S ribosomal protein S25 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 28 1305
95 % 3 28 1757 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 28 1797
70 % 3 29 1759
50 % 29 77 504
40 % 29 81 520
30 % 29 81 517
Entity #27 | Chains: a
40S ribosomal protein S26 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 30317
95 % 3 26 1907 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 26 1953
70 % 3 27 1908
50 % 4 53 994
40 % 6 55 932
30 % 6 55 919
Entity #28 | Chains: b
40S ribosomal protein S27 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 35 1046
95 % 3 35 1411 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 35 1437
70 % 39 105 318
50 % 41 112 350
40 % 41 112 365
30 % 41 113 365
Entity #29 | Chains: c
40S ribosomal protein S28 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 32 1120
95 % 3 32 1512 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 35 1439
70 % 40 111 302
50 % 42 118 316
40 % 42 118 336
30 % 42 118 340
Entity #3 | Chains: C
40S ribosomal protein S2 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27756
95 % 2 3 23222 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 26 1921
70 % 3 27 1864
50 % 29 83 468
40 % 29 83 512
30 % 29 83 502
Entity #30 | Chains: d
40S ribosomal protein S29 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 36 1000
95 % 3 36 1349 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 36 1371
70 % 40 100 328
50 % 42 113 343
40 % 42 117 339
30 % 42 117 345
Entity #31 | Chains: e
40S ribosomal protein S30 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 11 6037
95 % 3 15 3338 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 15 3380
70 % 3 15 3333
50 % 3 16 3046
40 % 3 16 2994
30 % 3 16 2801
Entity #32 | Chains: f
40S ribosomal protein S27A protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 2096
95 % 3 25 2010 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 25 2056
70 % 5 47 1054
50 % 5 48 1074
40 % 5 51 1044
30 % 5 51 1031
Entity #33 | Chains: g
40S ribosomal protein RACK1 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 37 903
95 % 4 37 1222 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 37 1243
70 % 5 39 1220
50 % 47 111 337
40 % 49 113 324
30 % 49 114 327
Entity #34 | Chains: i
18S ribosomal RNA rna, length: 1863 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #35 | Chains: l
Eukaryotic translation initiation factor 1 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 47902
95 % 1 2 35807 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 1 2 34175
70 % 1 2 30362
50 % 1 9 7339
40 % 1 9 6815
30 % 1 9 6081
Entity #4 | Chains: D
40S ribosomal protein S3 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 16 3481
95 % 3 36 1327 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 36 1352
70 % 41 106 311
50 % 41 110 364
40 % 43 113 354
30 % 43 116 348
Entity #5 | Chains: E
40S ribosomal protein S4X protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 15704
95 % 3 28 1744 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 35 1409
70 % 39 104 319
50 % 41 117 325
40 % 41 117 342
30 % 41 121 331
Entity #6 | Chains: F
40S ribosomal protein S5 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 36 990
95 % 3 36 1334 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 36 1357
70 % 40 113 295
50 % 42 122 294
40 % 43 127 302
30 % 43 127 308
Entity #7 | Chains: G
40S ribosomal protein S6 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 34 1058
95 % 3 35 1385 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 3 35 1411
70 % 3 37 1340
50 % 40 113 362
40 % 40 114 373
30 % 40 114 379
Entity #8 | Chains: H
40S ribosomal protein S7 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 35 1031
95 % 3 35 1396 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 35 1421
70 % 3 36 1375
50 % 39 104 385
40 % 39 108 389
30 % 41 116 354
Entity #9 | Chains: I
40S ribosomal protein S8 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 16027
95 % 3 35 1394 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 35 1417
70 % 3 35 1427
50 % 41 116 332
40 % 41 116 346
30 % 41 116 352

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures