Sequence Similarity Clusters for the Entities in PDB 4KRE

Entity #1 | Chains: A
Protein argonaute-1 protein, length: 858 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26616
95 % 1 4 17829 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 1 4 17392
70 % 2 26 2330
50 % 2 26 2312
40 % 2 26 2288
30 % 2 26 2147
Entity #2 | Chains: R
RNA (5'-R(P*AP*AP*UP*AP*UP*UP*AP*AP*A*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') rna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4KRE 1 A Protein argonaute-1 9606
2 4KRF 1 A Protein argonaute-1 9606
3 4KXT 1 A Protein argonaute-1 9606
4 5W6V 1 A Protein argonaute-1 9606