Sequence Similarity Clusters for the Entities in PDB 4KRE

Entity #1 | Chains: A
Protein argonaute-1 protein, length: 858 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27114
95 % 1 4 18168 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 1 4 17711
70 % 2 26 2387
50 % 2 26 2359
40 % 2 26 2333
30 % 2 26 2187
Entity #2 | Chains: R
RNA (5'-R(P*AP*AP*UP*AP*UP*UP*AP*AP*A*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') rna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Z4D 1 A Protein argonaute-2 9606 3.1.26.n2 | Details
2 4KRE 1 A Protein argonaute-1 9606
3 4Z4E 1 A Protein argonaute-2 9606 3.1.26.n2 | Details
4 4W5O 1 A Protein argonaute-2 9606 3.1.26.n2 | Details
5 4KRF 1 A Protein argonaute-1 9606
6 6CBD 1 A Protein argonaute-2 9606 3.1.26.n2 | Details
7 4Z4C 1 A Protein argonaute-2 9606 3.1.26.n2 | Details
8 4KXT 1 A Protein argonaute-1 9606
9 4F3T 1 A Protein argonaute-2 9606 3.1.26.n2 | Details
10 5KI6 1 A Protein argonaute-2 9606 3.1.26.n2 | Details
11 4Z4H 1 A Protein argonaute-2 9606 3.1.26.n2 | Details
12 4W5T 1 A Protein argonaute-2 9606 3.1.26.n2 | Details
13 4OLA 1 A Protein argonaute-2 9606 3.1.26.n2 | Details
14 4W5R 1 A Protein argonaute-2 9606 3.1.26.n2 | Details
15 5T7B 2 A Protein argonaute-2 9606 3.1.26.n2 | Details
16 4Z4G 1 A Protein argonaute-2 9606 3.1.26.n2 | Details
17 5JS1 1 A Protein argonaute-2 9606 3.1.26.n2 | Details
18 4Z4F 1 A Protein argonaute-2 9606 3.1.26.n2 | Details
19 4Z4I 1 A Protein argonaute-2 9606 3.1.26.n2 | Details
20 5W6V 1 A Protein argonaute-1 9606
21 4OLB 1 A Protein argonaute-2 9606 3.1.26.n2 | Details
22 4W5Q 1 A Protein argonaute-2 9606 3.1.26.n2 | Details
23 4W5N 1 A Protein argonaute-2 9606 3.1.26.n2 | Details
24 5JS2 1 A Protein argonaute-2 9606 3.1.26.n2 | Details
25 5VM9 1 A, C Protein argonaute-3 9606
26 5WEA 1 A Protein argonaute-2 9606 3.1.26.n2 | Details