Sequence Similarity Clusters for the Entities in PDB 4KNY

Entity #1 | Chains: A,B
KDP operon transcriptional regulatory protein KdpE protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38900
95 % 2 2 17754 Flexibility: High
Max RMSD: 19.1, Avg RMSD: 12.8
PDBFlex
90 % 2 2 17376
70 % 2 2 16128
50 % 2 2 14049
40 % 2 2 12538
30 % 14 16 1388
Entity #2 | Chains: Y
Promoter DNA dna, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: Z
Promoter DNA dna, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.