Sequence Similarity Clusters for the Entities in PDB 4KMU

Entity #1 | Chains: A,B,F,G
DNA-directed RNA polymerase subunit alpha protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 27 249
95 % 17 27 352
90 % 17 27 378
70 % 17 27 415
50 % 17 27 488
40 % 57 79 170
30 % 58 80 187
Entity #2 | Chains: C,H
DNA-directed RNA polymerase subunit beta protein, length: 1342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 34 493
95 % 25 41 528
90 % 25 41 561
70 % 25 41 604
50 % 25 41 643
40 % 25 41 679
30 % 25 41 684
Entity #3 | Chains: D,I
DNA-directed RNA polymerase subunit beta' protein, length: 1407 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 41 370
95 % 25 41 527
90 % 25 41 560
70 % 25 41 603
50 % 25 41 642
40 % 25 41 678
30 % 25 41 683
Entity #4 | Chains: E,J
DNA-directed RNA polymerase subunit omega protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 40 399
95 % 25 40 562
90 % 25 40 592
70 % 25 40 624
50 % 25 40 675
40 % 25 40 716
30 % 25 40 715
Entity #5 | Chains: X,Y
RNA polymerase sigma factor RpoD protein, length: 613 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 26 636
95 % 18 27 841
90 % 18 27 874
70 % 18 27 906
50 % 18 27 952
40 % 18 27 970
30 % 18 27 953

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.