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An Information Portal to 110988 Biological Macromolecular Structures

X-ray crystal structure of the Escherichia coli RNA polymerase in complex with Rifampin
Sequence Clustering and Redundancy Reduction Results
4KMU
Sequence Clusters for the Sequence Entities in PDB 4KMU
Entity #1: Chains: A,B,F,G - DNA-directed RNA polymerase subunit alpha protein, length: 329 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 18 325
95% 10 18 476
90% 10 18 499
70% 10 18 544
50% 10 18 623
40% 42 57 195
30% 43 58 210
Entity #2: Chains: C,H - DNA-directed RNA polymerase subunit beta protein, length: 1342 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 27 432
95% 17 28 609
90% 17 28 640
70% 17 28 697
50% 17 28 785
40% 17 28 812
30% 17 28 811
Entity #3: Chains: D,I - DNA-directed RNA polymerase subunit beta' protein, length: 1407 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 28 420
95% 17 28 608
90% 17 28 639
70% 17 28 696
50% 17 28 784
40% 17 28 811
30% 17 28 810
Entity #4: Chains: E,J - DNA-directed RNA polymerase subunit omega protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 28 430
95% 17 28 619
90% 17 28 651
70% 17 28 708
50% 17 28 798
40% 17 28 823
30% 17 28 820
Entity #5: Chains: X,Y - RNA polymerase sigma factor RpoD protein, length: 613 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 20 688
95% 12 21 932
90% 12 21 955
70% 12 21 992
50% 12 21 1034
40% 12 21 1060
30% 12 21 1038
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.