Sequence Similarity Clusters for the Entities in PDB 4KMU

Entity #1 | Chains: A,B,F,G
DNA-directed RNA polymerase subunit alpha protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 20 331
95 % 10 20 489
90 % 10 20 522
70 % 10 20 566
50 % 10 20 648
40 % 48 70 179
30 % 49 71 191
Entity #2 | Chains: C,H
DNA-directed RNA polymerase subunit beta protein, length: 1342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 32 439
95 % 18 33 626
90 % 18 33 660
70 % 18 33 699
50 % 18 33 773
40 % 18 33 807
30 % 18 33 803
Entity #3 | Chains: D,I
DNA-directed RNA polymerase subunit beta' protein, length: 1407 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 33 426
95 % 18 33 625
90 % 18 33 659
70 % 18 33 698
50 % 18 33 772
40 % 18 33 806
30 % 18 33 802
Entity #4 | Chains: E,J
DNA-directed RNA polymerase subunit omega protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 33 436
95 % 18 33 639
90 % 18 33 681
70 % 18 33 721
50 % 18 33 787
40 % 18 33 814
30 % 18 33 810
Entity #5 | Chains: X,Y
RNA polymerase sigma factor RpoD protein, length: 613 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 764
95 % 12 21 1024
90 % 12 21 1045
70 % 12 21 1089
50 % 12 21 1139
40 % 12 21 1163
30 % 12 21 1142

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.