Sequence Similarity Clusters for the Entities in PDB 4KMU

Entity #1 | Chains: A,B,F,G
DNA-directed RNA polymerase subunit alpha protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 41 210
95 % 21 41 287 Flexibility: Low
Max RMSD: 32.1, Avg RMSD: 2.2
PDBFlex
90 % 21 41 300
70 % 21 41 348
50 % 21 41 416
40 % 68 100 154
30 % 69 101 165
Entity #2 | Chains: C,H
DNA-directed RNA polymerase subunit beta protein, length: 1342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 55 372
95 % 29 64 397 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 29 64 429
70 % 29 64 461
50 % 29 64 517
40 % 29 64 556
30 % 29 64 553
Entity #3 | Chains: D,I
DNA-directed RNA polymerase subunit beta' protein, length: 1407 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 64 289
95 % 29 64 396 Flexibility: Medium
Max RMSD: 10.8, Avg RMSD: 4.3
PDBFlex
90 % 29 64 428
70 % 29 64 460
50 % 29 64 516
40 % 29 64 555
30 % 29 64 552
Entity #4 | Chains: E,J
DNA-directed RNA polymerase subunit omega protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 61 313
95 % 29 61 428 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.1
PDBFlex
90 % 29 61 467
70 % 29 61 496
50 % 29 61 536
40 % 29 61 574
30 % 29 61 570
Entity #5 | Chains: X,Y
RNA polymerase sigma factor RpoD protein, length: 613 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 33 556
95 % 22 34 742 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 2.7
PDBFlex
90 % 22 34 773
70 % 22 34 825
50 % 22 34 865
40 % 22 34 899
30 % 22 34 881

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures