Sequence Similarity Clusters for the Entities in PDB 4KMU

Entity #1 | Chains: A,B,F,G
DNA-directed RNA polymerase subunit alpha protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 35 221
95 % 20 35 308
90 % 20 35 323
70 % 20 35 364
50 % 20 35 434
40 % 65 92 153
30 % 66 93 167
Entity #2 | Chains: C,H
DNA-directed RNA polymerase subunit beta protein, length: 1342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 44 411
95 % 28 52 426
90 % 28 52 459
70 % 28 52 498
50 % 28 52 561
40 % 28 52 602
30 % 28 52 591
Entity #3 | Chains: D,I
DNA-directed RNA polymerase subunit beta' protein, length: 1407 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 52 296
95 % 28 52 425
90 % 28 52 458
70 % 28 52 497
50 % 28 52 560
40 % 28 52 601
30 % 28 52 590
Entity #4 | Chains: E,J
DNA-directed RNA polymerase subunit omega protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 49 338
95 % 28 49 482
90 % 28 49 518
70 % 28 49 553
50 % 28 49 604
40 % 28 49 635
30 % 28 49 633
Entity #5 | Chains: X,Y
RNA polymerase sigma factor RpoD protein, length: 613 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 29 585
95 % 21 30 789
90 % 21 30 817
70 % 21 30 856
50 % 21 30 906
40 % 21 30 933
30 % 21 30 911

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.