Sequence Similarity Clusters for the Entities in PDB 4KMU

Entity #1 | Chains: A,B,F,G
DNA-directed RNA polymerase subunit alpha protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 29 248
95 % 17 29 344
90 % 17 29 371
70 % 17 29 406
50 % 17 29 479
40 % 59 83 167
30 % 60 84 183
Entity #2 | Chains: C,H
DNA-directed RNA polymerase subunit beta protein, length: 1342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 38 455
95 % 25 46 493
90 % 25 46 530
70 % 25 46 565
50 % 25 46 607
40 % 25 46 640
30 % 25 46 650
Entity #3 | Chains: D,I
DNA-directed RNA polymerase subunit beta' protein, length: 1407 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 46 340
95 % 25 46 492
90 % 25 46 529
70 % 25 46 564
50 % 25 46 606
40 % 25 46 639
30 % 25 46 649
Entity #4 | Chains: E,J
DNA-directed RNA polymerase subunit omega protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 43 382
95 % 25 43 542
90 % 25 43 572
70 % 25 43 617
50 % 25 43 655
40 % 25 43 691
30 % 25 43 690
Entity #5 | Chains: X,Y
RNA polymerase sigma factor RpoD protein, length: 613 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 26 648
95 % 18 27 852
90 % 18 27 886
70 % 18 27 917
50 % 18 27 970
40 % 18 27 989
30 % 18 27 965

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.