Sequence Similarity Clusters for the Entities in PDB 4KMU

Entity #1 | Chains: A,B,F,G
DNA-directed RNA polymerase subunit alpha protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 36 221
95 % 20 36 310 Flexibility: Low
Max RMSD: 32.1, Avg RMSD: 2.2
PDBFlex
90 % 20 36 326
70 % 20 36 369
50 % 20 36 433
40 % 65 93 156
30 % 66 94 168
Entity #2 | Chains: C,H
DNA-directed RNA polymerase subunit beta protein, length: 1342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 49 373
95 % 28 57 387 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 28 57 417
70 % 28 57 458
50 % 28 57 533
40 % 28 57 577
30 % 28 57 574
Entity #3 | Chains: D,I
DNA-directed RNA polymerase subunit beta' protein, length: 1407 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 57 277
95 % 28 57 386 Flexibility: Medium
Max RMSD: 10.8, Avg RMSD: 4.3
PDBFlex
90 % 28 57 416
70 % 28 57 457
50 % 28 57 532
40 % 28 57 576
30 % 28 57 573
Entity #4 | Chains: E,J
DNA-directed RNA polymerase subunit omega protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 51 322
95 % 28 51 467 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.1
PDBFlex
90 % 28 51 508
70 % 28 51 546
50 % 28 51 595
40 % 28 51 632
30 % 28 51 622
Entity #5 | Chains: X,Y
RNA polymerase sigma factor RpoD protein, length: 613 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 30 577
95 % 21 31 778 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 2.7
PDBFlex
90 % 21 31 806
70 % 21 31 850
50 % 21 31 903
40 % 21 31 928
30 % 21 31 911

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.