Sequence Similarity Clusters for the Entities in PDB 4KMU

Entity #1 | Chains: A,B,F,G
DNA-directed RNA polymerase subunit alpha protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 34 224
95 % 20 34 312 Flexibility: Low
Max RMSD: 32.1, Avg RMSD: 2.3
PDBFlex
90 % 20 34 329
70 % 20 34 368
50 % 20 34 431
40 % 65 91 153
30 % 66 92 167
Entity #2 | Chains: C,H
DNA-directed RNA polymerase subunit beta protein, length: 1342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 43 401
95 % 28 51 419 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 28 51 456
70 % 28 51 493
50 % 28 51 560
40 % 28 51 597
30 % 28 51 591
Entity #3 | Chains: D,I
DNA-directed RNA polymerase subunit beta' protein, length: 1407 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 51 288
95 % 28 51 418 Flexibility: Medium
Max RMSD: 10.8, Avg RMSD: 4.2
PDBFlex
90 % 28 51 455
70 % 28 51 492
50 % 28 51 559
40 % 28 51 596
30 % 28 51 590
Entity #4 | Chains: E,J
DNA-directed RNA polymerase subunit omega protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 48 332
95 % 28 48 472 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.0
PDBFlex
90 % 28 48 509
70 % 28 48 553
50 % 28 48 601
40 % 28 48 632
30 % 28 48 629
Entity #5 | Chains: X,Y
RNA polymerase sigma factor RpoD protein, length: 613 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 29 576
95 % 21 30 777 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 2.7
PDBFlex
90 % 21 30 805
70 % 21 30 851
50 % 21 30 895
40 % 21 30 917
30 % 21 30 898

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.