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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KJC
Sequence Clusters for the Sequence Entities in PDB 4KJC
Entity #1: Chains: A - 16S rRNA rna, length: 1542 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 108 166
95% 11 108 239
90% 11 108 249
70% 14 112 233
50% 37 374 34
40% 37 374 46
30% 37 379 66
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 108 165
95% 10 108 238
90% 10 108 248
70% 10 108 271
50% 31 368 42
40% 35 408 40
30% 35 408 53
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 112 139
95% 10 112 204
90% 10 112 216
70% 31 380 24
50% 31 380 33
40% 31 380 45
30% 31 380 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 109 154
95% 10 109 223
90% 10 109 236
70% 10 109 260
50% 31 370 39
40% 31 370 53
30% 33 406 57
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 103 190
95% 10 105 260
90% 10 105 271
70% 10 105 293
50% 10 105 322
40% 10 106 341
30% 10 106 352
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 82 245
95% 11 110 215
90% 11 110 228
70% 11 110 252
50% 36 381 32
40% 36 381 43
30% 36 381 68
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 82 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 108 168
95% 10 108 241
90% 10 108 251
70% 10 108 273
50% 10 108 305
40% 10 108 332
30% 31 368 78
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 108 167
95% 10 108 240
90% 10 108 250
70% 10 108 272
50% 10 111 291
40% 10 111 316
30% 10 113 324
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 63 352
95% 4 65 485
90% 4 65 506
70% 4 65 541
50% 4 65 585
40% 4 65 616
30% 4 65 623
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 107 171
95% 10 107 245
90% 10 107 255
70% 10 107 278
50% 32 371 38
40% 32 371 51
30% 32 371 75
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 106 176
95% 10 106 250
90% 10 106 261
70% 10 106 286
50% 10 106 315
40% 31 368 55
30% 31 368 77
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 107 172
95% 10 107 246
90% 10 107 256
70% 10 107 279
50% 10 107 310
40% 10 107 336
30% 10 107 347
Entity #21: Chains: U - 30S ribosomal protein S21 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 61 362
95% 4 61 523
90% 4 61 547
70% 4 61 586
50% 4 61 628
40% 4 61 655
30% 4 61 662
Entity #22: Chains: V - elongation factor G protein, length: 704 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 12 3106
95% 4 12 3757
90% 4 12 3798
70% 4 12 3805
50% 14 54 645
40% 14 54 673
30% 16 56 655
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 63 347
95% 4 63 501
90% 4 63 523
70% 4 63 561
50% 23 285 76
40% 23 285 100
30% 23 285 124
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 107 170
95% 10 107 243
90% 10 107 253
70% 10 107 276
50% 31 368 40
40% 31 369 54
30% 31 369 76
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 108 162
95% 10 108 233
90% 10 108 244
70% 10 108 266
50% 32 372 37
40% 32 372 50
30% 32 374 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 63 350
95% 4 63 505
90% 4 63 527
70% 4 63 568
50% 4 63 613
40% 4 63 639
30% 4 63 641
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 62 354
95% 4 62 513
90% 4 62 535
70% 4 62 575
50% 4 62 619
40% 4 62 644
30% 4 62 649
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 109 145
95% 11 109 213
90% 11 109 226
70% 11 109 250
50% 34 374 35
40% 35 376 47
30% 38 413 52
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 108 164
95% 10 108 237
90% 10 108 247
70% 10 108 270
50% 31 368 41
40% 31 368 56
30% 33 404 58
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.