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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KJC
Sequence Clusters for the Sequence Entities in PDB 4KJC
Entity #1: Chains: A - 16S rRNA rna, length: 1542 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 110 166
95% 11 110 235
90% 11 110 249
70% 14 114 233
50% 45 384 34
40% 45 384 46
30% 45 389 65
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 110 165
95% 10 110 234
90% 10 110 248
70% 10 110 270
50% 39 378 41
40% 49 454 34
30% 49 454 44
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 114 143
95% 10 114 209
90% 10 114 222
70% 39 390 24
50% 39 390 33
40% 39 390 45
30% 39 390 68
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 111 159
95% 10 111 226
90% 10 111 241
70% 10 111 263
50% 39 380 38
40% 39 380 51
30% 47 452 47
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 105 188
95% 10 107 257
90% 10 107 268
70% 10 107 288
50% 10 107 324
40% 10 108 346
30% 10 108 356
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 84 246
95% 11 112 224
90% 11 112 237
70% 11 112 261
50% 44 391 32
40% 44 391 43
30% 44 391 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 82 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 110 169
95% 10 110 238
90% 10 110 252
70% 10 110 273
50% 10 110 308
40% 10 110 330
30% 39 378 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 110 168
95% 10 110 237
90% 10 110 251
70% 10 110 272
50% 10 113 297
40% 10 113 320
30% 10 115 333
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 63 354
95% 4 65 490
90% 4 65 513
70% 4 65 553
50% 4 65 616
40% 4 65 652
30% 4 65 656
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 109 172
95% 10 109 242
90% 10 109 256
70% 10 109 277
50% 40 381 37
40% 40 381 49
30% 40 381 72
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 108 179
95% 10 108 250
90% 10 108 262
70% 10 108 282
50% 10 108 314
40% 39 378 53
30% 39 378 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 109 173
95% 10 109 243
90% 10 109 257
70% 10 109 278
50% 10 109 311
40% 10 109 335
30% 10 109 348
Entity #21: Chains: U - 30S ribosomal protein S21 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 61 364
95% 4 61 528
90% 4 61 555
70% 4 61 604
50% 4 61 673
40% 4 61 702
30% 4 61 705
Entity #22: Chains: V - elongation factor G protein, length: 704 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 12 3195
95% 4 12 3840
90% 4 12 3873
70% 4 12 3871
50% 14 54 693
40% 14 54 724
30% 16 56 696
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 63 349
95% 4 63 508
90% 4 63 532
70% 4 63 571
50% 31 293 73
40% 31 293 99
30% 31 293 119
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 109 170
95% 10 109 240
90% 10 109 254
70% 10 109 275
50% 39 378 39
40% 39 379 52
30% 39 379 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 110 162
95% 10 110 232
90% 10 110 246
70% 10 110 268
50% 40 382 36
40% 40 382 48
30% 40 384 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 63 352
95% 4 63 512
90% 4 63 536
70% 4 63 576
50% 4 63 654
40% 4 63 679
30% 4 63 678
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 62 356
95% 4 62 519
90% 4 62 543
70% 4 62 586
50% 4 62 663
40% 4 62 688
30% 4 62 689
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 111 157
95% 11 111 223
90% 11 111 236
70% 11 111 260
50% 42 384 35
40% 43 386 47
30% 52 459 43
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 110 164
95% 10 110 233
90% 10 110 247
70% 10 110 269
50% 39 378 40
40% 39 378 54
30% 47 450 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.