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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KJA
Sequence Clusters for the Sequence Entities in PDB 4KJA
Entity #1: Chains: A - 16S rRNA rna, length: 1542 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 108 169
95% 10 108 242
90% 10 108 253
70% 13 112 235
50% 44 382 34
40% 44 382 45
30% 44 387 65
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 108 168
95% 9 108 241
90% 9 108 252
70% 9 108 275
50% 38 376 41
40% 48 436 38
30% 48 436 51
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 112 141
95% 9 112 207
90% 9 112 220
70% 38 388 24
50% 38 388 33
40% 38 388 44
30% 38 388 68
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 109 160
95% 9 109 230
90% 9 109 244
70% 9 109 266
50% 38 378 38
40% 38 378 51
30% 46 434 54
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 103 192
95% 9 105 264
90% 9 105 276
70% 9 105 297
50% 9 105 330
40% 9 106 349
30% 9 106 361
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 82 246
95% 10 110 226
90% 10 110 240
70% 10 110 263
50% 43 389 32
40% 43 389 43
30% 43 389 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 82 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 108 171
95% 9 108 244
90% 9 108 255
70% 9 108 277
50% 9 108 313
40% 9 108 340
30% 38 376 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 108 170
95% 9 108 243
90% 9 108 254
70% 9 108 276
50% 9 111 299
40% 9 111 324
30% 9 113 335
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 63 354
95% 3 65 487
90% 3 65 510
70% 3 65 548
50% 3 65 588
40% 3 65 620
30% 3 65 626
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 107 176
95% 9 107 250
90% 9 107 261
70% 9 107 284
50% 39 379 37
40% 39 379 49
30% 39 379 72
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 106 179
95% 9 106 253
90% 9 106 265
70% 9 106 290
50% 9 106 323
40% 38 376 53
30% 38 376 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 107 177
95% 9 107 251
90% 9 107 262
70% 9 107 285
50% 9 107 320
40% 9 107 344
30% 9 107 357
Entity #21: Chains: U - 30S ribosomal protein S21 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 61 364
95% 3 61 525
90% 3 61 550
70% 3 61 589
50% 3 61 633
40% 3 61 665
30% 3 61 668
Entity #22: Chains: V - elongation factor G protein, length: 704 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 12 3166
95% 3 12 3815
90% 3 12 3848
70% 3 12 3848
50% 13 54 657
40% 13 54 688
30% 15 56 660
Entity #23: Chains: W - Viomycin protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 63 349
95% 3 63 507
90% 3 63 530
70% 3 63 566
50% 30 293 73
40% 30 293 98
30% 30 293 119
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 107 174
95% 9 107 247
90% 9 107 258
70% 9 107 281
50% 38 376 39
40% 38 377 52
30% 38 377 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 108 165
95% 9 108 236
90% 9 108 248
70% 9 108 270
50% 39 380 36
40% 39 380 48
30% 39 382 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 63 352
95% 3 63 511
90% 3 63 534
70% 3 63 571
50% 3 63 616
40% 3 63 645
30% 3 63 645
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 62 356
95% 3 62 517
90% 3 62 540
70% 3 62 578
50% 3 62 623
40% 3 62 651
30% 3 62 654
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 109 153
95% 10 109 221
90% 10 109 235
70% 10 109 258
50% 41 382 35
40% 42 384 46
30% 51 441 47
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 108 167
95% 9 108 240
90% 9 108 251
70% 9 108 274
50% 38 376 40
40% 38 376 54
30% 46 432 56
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.