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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KJA
Sequence Clusters for the Sequence Entities in PDB 4KJA
Entity #1: Chains: A - 16S rRNA rna, length: 1542 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 110 167
95% 10 110 238
90% 10 110 251
70% 13 114 234
50% 44 384 34
40% 44 384 46
30% 44 389 65
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 110 166
95% 9 110 237
90% 9 110 250
70% 9 110 273
50% 38 378 41
40% 48 454 34
30% 48 454 44
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 114 149
95% 9 114 215
90% 9 114 228
70% 38 390 24
50% 38 390 33
40% 38 390 45
30% 38 390 68
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 111 161
95% 9 111 228
90% 9 111 243
70% 9 111 265
50% 38 380 38
40% 38 380 51
30% 46 452 47
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 105 188
95% 9 107 258
90% 9 107 269
70% 9 107 291
50% 9 107 325
40% 9 108 347
30% 9 108 358
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 84 246
95% 10 112 225
90% 10 112 238
70% 10 112 262
50% 43 391 32
40% 43 391 43
30% 43 391 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 82 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 110 169
95% 9 110 240
90% 9 110 253
70% 9 110 275
50% 9 110 310
40% 9 110 331
30% 38 378 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 110 168
95% 9 110 239
90% 9 110 252
70% 9 110 274
50% 9 113 297
40% 9 113 321
30% 9 115 334
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 63 354
95% 3 65 491
90% 3 65 514
70% 3 65 554
50% 3 65 616
40% 3 65 653
30% 3 65 657
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 109 174
95% 9 109 247
90% 9 109 259
70% 9 109 280
50% 39 381 37
40% 39 381 49
30% 39 381 72
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 108 179
95% 9 108 252
90% 9 108 263
70% 9 108 284
50% 9 108 316
40% 38 378 53
30% 38 378 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 109 175
95% 9 109 248
90% 9 109 260
70% 9 109 281
50% 9 109 314
40% 9 109 337
30% 9 109 351
Entity #21: Chains: U - 30S ribosomal protein S21 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 61 364
95% 3 61 528
90% 3 61 555
70% 3 61 604
50% 3 61 671
40% 3 61 702
30% 3 61 705
Entity #22: Chains: V - elongation factor G protein, length: 704 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 12 3202
95% 3 12 3846
90% 3 12 3880
70% 3 12 3877
50% 13 54 691
40% 13 54 725
30% 15 56 696
Entity #23: Chains: W - Viomycin protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 63 349
95% 3 63 509
90% 3 63 533
70% 3 63 573
50% 30 293 74
40% 30 293 99
30% 30 293 119
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 109 172
95% 9 109 245
90% 9 109 257
70% 9 109 278
50% 38 378 39
40% 38 379 52
30% 38 379 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 110 163
95% 9 110 234
90% 9 110 248
70% 9 110 270
50% 39 382 36
40% 39 382 48
30% 39 384 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 63 352
95% 3 63 513
90% 3 63 537
70% 3 63 578
50% 3 63 655
40% 3 63 681
30% 3 63 680
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 62 356
95% 3 62 520
90% 3 62 544
70% 3 62 587
50% 3 62 662
40% 3 62 689
30% 3 62 689
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 111 158
95% 10 111 224
90% 10 111 237
70% 10 111 261
50% 41 384 35
40% 42 386 47
30% 51 459 43
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 110 165
95% 9 110 236
90% 9 110 249
70% 9 110 272
50% 38 378 40
40% 38 378 54
30% 46 450 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.