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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KJ8
Sequence Clusters for the Sequence Entities in PDB 4KJ8
Entity #1: Chains: A - 16S rRNA rna, length: 1542 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 108 165
95% 9 108 238
90% 9 108 248
70% 12 112 230
50% 35 369 34
40% 35 369 48
30% 35 374 67
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 108 164
95% 8 108 237
90% 8 108 247
70% 8 108 271
50% 29 363 42
40% 33 403 39
30% 33 403 53
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 112 139
95% 8 112 204
90% 8 112 216
70% 29 375 24
50% 29 375 33
40% 29 375 47
30% 29 375 71
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 109 153
95% 8 109 222
90% 8 109 235
70% 8 109 260
50% 29 365 39
40% 29 365 53
30% 31 401 57
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 103 190
95% 8 105 258
90% 8 105 269
70% 8 105 292
50% 8 105 321
40% 8 106 341
30% 8 106 351
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 82 245
95% 9 110 215
90% 9 110 228
70% 9 110 252
50% 34 376 32
40% 34 376 45
30% 34 376 69
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 82 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 108 167
95% 8 108 240
90% 8 108 250
70% 8 108 273
50% 8 108 305
40% 8 108 332
30% 29 363 78
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 108 166
95% 8 108 239
90% 8 108 249
70% 8 108 272
50% 8 111 291
40% 8 111 315
30% 8 113 324
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 63 351
95% 2 65 482
90% 2 65 504
70% 2 65 538
50% 2 65 584
40% 2 65 615
30% 2 65 618
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 107 170
95% 8 107 244
90% 8 107 254
70% 8 107 278
50% 30 366 38
40% 30 366 52
30% 30 366 75
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 106 175
95% 8 106 249
90% 8 106 260
70% 8 106 286
50% 8 106 315
40% 29 363 55
30% 29 363 77
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 107 171
95% 8 107 245
90% 8 107 255
70% 8 107 279
50% 8 107 310
40% 8 107 336
30% 8 107 346
Entity #21: Chains: U - 30S ribosomal protein S21 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 61 361
95% 2 61 521
90% 2 61 545
70% 2 61 583
50% 2 61 627
40% 2 61 653
30% 2 61 654
Entity #22: Chains: V - elongation factor G protein, length: 704 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 12 3095
95% 2 12 3745
90% 2 12 3787
70% 2 12 3792
50% 12 52 674
40% 12 52 698
30% 14 54 671
Entity #23: Chains: W - Viomycin protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 63 346
95% 2 63 498
90% 2 63 521
70% 2 63 558
50% 21 282 81
40% 21 282 101
30% 21 282 123
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 107 169
95% 8 107 242
90% 8 107 252
70% 8 107 276
50% 29 363 40
40% 29 364 54
30% 29 364 76
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 108 161
95% 8 108 232
90% 8 108 243
70% 8 108 266
50% 30 367 37
40% 30 367 51
30% 30 369 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 63 349
95% 2 63 502
90% 2 63 525
70% 2 63 565
50% 2 63 612
40% 2 63 637
30% 2 63 637
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 62 353
95% 2 62 510
90% 2 62 533
70% 2 62 572
50% 2 62 618
40% 2 62 642
30% 2 62 644
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 109 145
95% 9 109 213
90% 9 109 226
70% 9 109 250
50% 32 369 36
40% 33 371 49
30% 36 408 50
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 108 163
95% 8 108 236
90% 8 108 246
70% 8 108 270
50% 29 363 41
40% 29 363 56
30% 31 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.