POP-OUT | CLOSE
 
Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KJ4
Sequence Clusters for the Sequence Entities in PDB 4KJ4
Entity #1: Chains: A - 16S rRNA rna, length: 1542 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 108 164
95% 17 108 237
90% 17 108 247
70% 20 112 229
50% 61 369 34
40% 61 369 48
30% 61 374 67
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 108 163
95% 16 108 236
90% 16 108 246
70% 16 108 270
50% 55 363 42
40% 59 403 39
30% 59 403 53
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 112 138
95% 16 112 202
90% 16 112 215
70% 55 375 24
50% 55 375 33
40% 55 375 47
30% 55 375 71
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 109 152
95% 16 109 220
90% 16 109 233
70% 16 109 259
50% 55 365 39
40% 55 365 53
30% 57 401 57
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 103 190
95% 16 105 257
90% 16 105 267
70% 16 105 291
50% 16 105 321
40% 16 106 341
30% 16 106 351
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 82 245
95% 17 110 213
90% 17 110 225
70% 17 110 251
50% 60 376 32
40% 60 376 45
30% 60 376 69
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 82 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 108 166
95% 16 108 239
90% 16 108 249
70% 16 108 272
50% 16 108 305
40% 16 108 332
30% 55 363 78
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 108 165
95% 16 108 238
90% 16 108 248
70% 16 108 271
50% 16 111 291
40% 16 111 315
30% 16 113 324
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 63 351
95% 8 65 480
90% 8 65 502
70% 8 65 535
50% 8 65 580
40% 8 65 612
30% 8 65 615
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 107 169
95% 16 107 243
90% 16 107 253
70% 16 107 277
50% 56 366 38
40% 56 366 52
30% 56 366 75
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 106 174
95% 16 106 248
90% 16 106 259
70% 16 106 285
50% 16 106 315
40% 55 363 55
30% 55 363 77
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 107 170
95% 16 107 244
90% 16 107 254
70% 16 107 278
50% 16 107 310
40% 16 107 336
30% 16 107 346
Entity #21: Chains: U - 30S ribosomal protein S21 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 61 361
95% 8 61 519
90% 8 61 543
70% 8 61 580
50% 8 61 624
40% 8 61 650
30% 8 61 652
Entity #22: Chains: V - elongation factor G protein, length: 704 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 12 3092
95% 8 12 3739
90% 8 12 3781
70% 8 12 3785
50% 21 52 672
40% 21 52 697
30% 23 54 670
Entity #23: Chains: W - Viomycin protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 63 346
95% 8 63 496
90% 8 63 519
70% 8 63 556
50% 44 282 81
40% 44 282 101
30% 44 282 123
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 107 168
95% 16 107 241
90% 16 107 251
70% 16 107 275
50% 55 363 40
40% 55 364 54
30% 55 364 76
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 108 160
95% 16 108 231
90% 16 108 242
70% 16 108 265
50% 56 367 37
40% 56 367 51
30% 56 369 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 63 349
95% 8 63 500
90% 8 63 523
70% 8 63 563
50% 8 63 609
40% 8 63 635
30% 8 63 635
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 62 353
95% 8 62 508
90% 8 62 531
70% 8 62 570
50% 8 62 615
40% 8 62 640
30% 8 62 642
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 109 144
95% 17 109 211
90% 17 109 223
70% 17 109 249
50% 58 369 36
40% 59 371 49
30% 62 408 50
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 108 162
95% 16 108 235
90% 16 108 245
70% 16 108 269
50% 55 363 41
40% 55 363 56
30% 57 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.