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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KJ3
Sequence Clusters for the Sequence Entities in PDB 4KJ3
Entity #1: Chains: B - 5S rRNA rna, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 50S ribosomal protein L13 protein, length: 142 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 110 144
95% 16 110 212
90% 16 110 225
70% 16 110 249
50% 30 265 90
40% 30 265 114
30% 30 266 139
Entity #11: Chains: K - 50S ribosomal protein L14 protein, length: 123 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 111 141
95% 16 111 206
90% 16 111 220
70% 16 111 245
50% 31 296 62
40% 31 297 81
30% 89 402 56
Entity #12: Chains: L - 50S ribosomal protein L15 protein, length: 144 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 110 143
95% 16 110 211
90% 16 110 224
70% 16 110 248
50% 16 110 296
40% 30 285 95
30% 88 394 62
Entity #13: Chains: M - 50S ribosomal protein L16 protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 109 151
95% 16 109 220
90% 16 109 233
70% 16 109 258
50% 30 287 73
40% 30 287 94
30% 30 287 116
Entity #14: Chains: N - 50S ribosomal protein L17 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 109 152
95% 16 109 221
90% 16 109 234
70% 16 109 259
50% 31 287 64
40% 31 289 82
30% 31 291 102
Entity #15: Chains: O - 50S ribosomal protein L18 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 109 154
95% 16 109 223
90% 16 109 236
70% 16 109 261
50% 30 284 78
40% 30 284 99
30% 30 284 119
Entity #16: Chains: P - 50S ribosomal protein L19 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 109 156
95% 16 109 225
90% 16 109 238
70% 16 109 263
50% 16 111 290
40% 16 111 314
30% 16 111 329
Entity #17: Chains: Q - 50S ribosomal protein L20 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 110 146
95% 16 110 214
90% 16 110 227
70% 16 110 251
50% 31 290 66
40% 31 291 84
30% 31 291 106
Entity #18: Chains: R - 50S ribosomal protein L21 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 106 177
95% 16 106 252
90% 16 106 264
70% 16 106 289
50% 16 106 318
40% 30 285 96
30% 30 285 118
Entity #19: Chains: S - 50S ribosomal protein L22 protein, length: 110 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 109 155
95% 16 109 224
90% 16 109 237
70% 16 109 262
50% 32 270 87
40% 32 270 108
30% 32 272 130
Entity #2: Chains: A - 23S rRNA rna, length: 2904 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 50S ribosomal protein L23 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 113 135
95% 16 113 199
90% 16 113 211
70% 16 113 239
50% 16 113 280
40% 30 291 87
30% 86 369 73
Entity #21: Chains: U - 50S ribosomal protein L24 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 112 140
95% 16 112 205
90% 16 112 217
70% 16 112 243
50% 16 112 287
40% 30 265 115
30% 30 267 137
Entity #22: Chains: V - 50S ribosomal protein L25 protein, length: 94 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 115 131
95% 17 115 191
90% 17 115 205
70% 17 115 235
50% 17 115 275
40% 17 115 300
30% 17 115 318
Entity #23: Chains: W - 50S ribosomal protein L27 protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 109 157
95% 16 109 226
90% 16 109 239
70% 16 136 191
50% 31 288 67
40% 31 288 88
30% 31 288 108
Entity #24: Chains: X - 50S ribosomal protein L28 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 94 214
95% 16 94 298
90% 16 94 317
70% 16 94 339
50% 16 94 372
40% 16 94 392
30% 16 94 400
Entity #25: Chains: Y - 50S ribosomal protein L29 protein, length: 63 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 113 136
95% 16 113 200
90% 16 113 212
70% 16 113 240
50% 16 113 281
40% 30 260 119
30% 30 284 120
Entity #26: Chains: Z - 50S ribosomal protein L30 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 110 147
95% 16 110 216
90% 16 110 229
70% 16 110 253
50% 16 111 292
40% 31 291 86
30% 31 291 107
Entity #27: Chains: 0 - 50S ribosomal protein L32 protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 107 172
95% 16 107 246
90% 16 107 256
70% 16 107 281
50% 16 107 312
40% 30 282 102
30% 30 282 124
Entity #28: Chains: 1 - 50S ribosomal protein L33 protein, length: 55 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 110 148
95% 16 110 217
90% 16 110 230
70% 16 110 254
50% 16 130 243
40% 30 280 104
30% 30 280 126
Entity #29: Chains: 2 - 50S ribosomal protein L34 protein, length: 46 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 105 183
95% 16 105 261
90% 16 105 272
70% 16 131 205
50% 16 133 237
40% 16 133 264
30% 16 133 286
Entity #3: Chains: C - 50S ribosomal protein L2 protein, length: 273 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 107 168
95% 16 107 241
90% 16 107 251
70% 16 107 275
50% 30 283 79
40% 30 283 100
30% 30 283 122
Entity #30: Chains: 3 - 50S ribosomal protein L35 protein, length: 65 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 105 182
95% 16 105 260
90% 16 105 271
70% 16 105 293
50% 16 105 322
40% 16 105 345
30% 16 105 356
Entity #31: Chains: 4 - 50S ribosomal protein L36 protein, length: 38 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 107 173
95% 16 107 247
90% 16 107 257
70% 16 107 282
50% 26 238 109
40% 26 238 132
30% 26 238 152
Entity #4: Chains: D - 50S ribosomal protein L3 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 110 142
95% 16 110 210
90% 16 110 223
70% 16 110 247
50% 30 288 72
40% 30 288 93
30% 30 289 114
Entity #5: Chains: E - 50S ribosomal protein L4 protein, length: 201 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 109 149
95% 16 109 218
90% 16 109 231
70% 16 109 256
50% 16 109 298
40% 17 112 307
30% 31 290 109
Entity #6: Chains: F - 50S ribosomal protein L5 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 112 138
95% 16 112 202
90% 16 112 214
70% 16 112 241
50% 32 288 68
40% 32 288 89
30% 32 288 110
Entity #7: Chains: G - 50S ribosomal protein L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 109 150
95% 16 109 219
90% 16 109 232
70% 16 109 257
50% 16 109 299
40% 31 292 85
30% 89 397 61
Entity #8: Chains: H - 50S ribosomal protein L9 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 5352
95% 8 9 5958
90% 8 9 5944
70% 8 9 5783
50% 11 20 2177
40% 11 22 2010
30% 11 22 1910
Entity #9: Chains: I - 50S ribosomal protein L11 protein, length: 142 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 113 133
95% 16 113 198
90% 16 113 210
70% 16 113 238
50% 23 196 127
40% 23 199 155
30% 23 201 179
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.