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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KJ3
Sequence Clusters for the Sequence Entities in PDB 4KJ3
Entity #1: Chains: B - 5S rRNA rna, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 50S ribosomal protein L13 protein, length: 142 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 112 144
95% 16 112 210
90% 16 112 223
70% 16 112 249
50% 38 280 85
40% 38 280 108
30% 38 281 130
Entity #11: Chains: K - 50S ribosomal protein L14 protein, length: 123 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 113 140
95% 16 113 204
90% 16 113 217
70% 16 113 244
50% 39 311 58
40% 39 312 77
30% 111 451 47
Entity #12: Chains: L - 50S ribosomal protein L15 protein, length: 144 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 112 143
95% 16 112 209
90% 16 112 222
70% 16 112 248
50% 16 112 297
40% 38 300 91
30% 110 443 53
Entity #13: Chains: M - 50S ribosomal protein L16 protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 111 151
95% 16 111 217
90% 16 111 232
70% 16 111 255
50% 38 302 67
40% 38 302 89
30% 38 302 111
Entity #14: Chains: N - 50S ribosomal protein L17 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 111 152
95% 16 111 218
90% 16 111 233
70% 16 111 256
50% 39 302 59
40% 39 304 78
30% 39 306 99
Entity #15: Chains: O - 50S ribosomal protein L18 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 111 153
95% 16 111 219
90% 16 111 234
70% 16 111 257
50% 38 299 69
40% 38 299 93
30% 38 299 113
Entity #16: Chains: P - 50S ribosomal protein L19 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 111 155
95% 16 111 221
90% 16 111 236
70% 16 111 259
50% 16 113 291
40% 16 113 315
30% 16 113 336
Entity #17: Chains: Q - 50S ribosomal protein L20 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 112 146
95% 16 112 212
90% 16 112 225
70% 16 112 250
50% 39 305 60
40% 39 306 79
30% 39 306 101
Entity #18: Chains: R - 50S ribosomal protein L21 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 108 173
95% 16 108 246
90% 16 108 257
70% 16 108 279
50% 16 108 315
40% 38 300 92
30% 38 300 112
Entity #19: Chains: S - 50S ribosomal protein L22 protein, length: 110 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 111 154
95% 16 111 220
90% 16 111 235
70% 16 111 258
50% 40 285 79
40% 40 285 103
30% 40 287 125
Entity #2: Chains: A - 23S rRNA rna, length: 2904 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 50S ribosomal protein L23 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 115 134
95% 16 115 195
90% 16 115 209
70% 16 115 238
50% 16 115 284
40% 38 306 81
30% 94 384 70
Entity #21: Chains: U - 50S ribosomal protein L24 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 114 138
95% 16 114 201
90% 16 114 216
70% 16 114 243
50% 16 114 288
40% 38 280 109
30% 38 282 128
Entity #22: Chains: V - 50S ribosomal protein L25 protein, length: 94 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 117 131
95% 17 117 193
90% 17 117 206
70% 17 117 235
50% 17 117 281
40% 17 117 308
30% 17 117 325
Entity #23: Chains: W - 50S ribosomal protein L27 protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 111 156
95% 16 111 222
90% 16 111 237
70% 16 138 196
50% 39 303 62
40% 39 303 82
30% 39 303 105
Entity #24: Chains: X - 50S ribosomal protein L28 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 96 212
95% 16 96 298
90% 16 96 317
70% 16 96 338
50% 16 96 371
40% 16 96 394
30% 16 96 404
Entity #25: Chains: Y - 50S ribosomal protein L29 protein, length: 63 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 115 135
95% 16 115 196
90% 16 115 210
70% 16 115 239
50% 16 115 285
40% 38 275 115
30% 38 299 114
Entity #26: Chains: Z - 50S ribosomal protein L30 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 112 147
95% 16 112 213
90% 16 112 226
70% 16 112 251
50% 16 113 292
40% 39 304 85
30% 39 304 108
Entity #27: Chains: 0 - 50S ribosomal protein L32 protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 109 162
95% 16 109 232
90% 16 109 246
70% 16 109 268
50% 16 109 308
40% 38 297 95
30% 38 297 116
Entity #28: Chains: 1 - 50S ribosomal protein L33 protein, length: 55 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 112 148
95% 16 112 214
90% 16 112 227
70% 16 112 252
50% 16 132 250
40% 38 295 97
30% 38 295 118
Entity #29: Chains: 2 - 50S ribosomal protein L34 protein, length: 46 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 107 180
95% 16 107 255
90% 16 107 266
70% 16 133 205
50% 16 135 242
40% 16 135 272
30% 16 135 296
Entity #3: Chains: C - 50S ribosomal protein L2 protein, length: 273 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 109 159
95% 16 109 229
90% 16 109 243
70% 16 109 265
50% 38 298 70
40% 38 298 94
30% 38 298 115
Entity #30: Chains: 3 - 50S ribosomal protein L35 protein, length: 65 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 107 179
95% 16 107 254
90% 16 107 265
70% 16 107 288
50% 16 107 322
40% 16 107 346
30% 16 107 359
Entity #31: Chains: 4 - 50S ribosomal protein L36 protein, length: 38 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 109 163
95% 16 109 233
90% 16 109 247
70% 16 109 269
50% 34 253 102
40% 34 253 128
30% 34 253 149
Entity #4: Chains: D - 50S ribosomal protein L3 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 112 142
95% 16 112 206
90% 16 112 219
70% 16 112 246
50% 38 303 66
40% 38 303 87
30% 38 304 109
Entity #5: Chains: E - 50S ribosomal protein L4 protein, length: 201 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 111 149
95% 16 111 215
90% 16 111 230
70% 16 111 253
50% 16 111 299
40% 17 114 313
30% 39 305 106
Entity #6: Chains: F - 50S ribosomal protein L5 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 114 136
95% 16 114 200
90% 16 114 215
70% 16 114 242
50% 40 303 64
40% 40 303 84
30% 40 303 107
Entity #7: Chains: G - 50S ribosomal protein L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 111 150
95% 16 111 216
90% 16 111 231
70% 16 111 254
50% 16 111 300
40% 39 307 80
30% 111 446 51
Entity #8: Chains: H - 50S ribosomal protein L9 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 10 4927
95% 8 10 5497
90% 8 10 5502
70% 8 10 5407
50% 11 21 2134
40% 11 23 1970
30% 11 23 1875
Entity #9: Chains: I - 50S ribosomal protein L11 protein, length: 142 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 115 133
95% 16 115 194
90% 16 115 208
70% 16 115 237
50% 23 201 125
40% 23 204 151
30% 23 206 174
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.