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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KJ3
Sequence Clusters for the Sequence Entities in PDB 4KJ3
Entity #1: Chains: B - 5S rRNA rna, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 50S ribosomal protein L13 protein, length: 142 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 111 145
95% 16 111 211
90% 16 111 226
70% 16 111 249
50% 38 279 85
40% 38 279 108
30% 38 280 131
Entity #11: Chains: K - 50S ribosomal protein L14 protein, length: 123 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 112 142
95% 16 112 208
90% 16 112 221
70% 16 112 246
50% 39 310 58
40% 39 311 75
30% 109 443 48
Entity #12: Chains: L - 50S ribosomal protein L15 protein, length: 144 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 111 144
95% 16 111 210
90% 16 111 225
70% 16 111 248
50% 16 111 298
40% 38 299 91
30% 108 435 53
Entity #13: Chains: M - 50S ribosomal protein L16 protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 110 152
95% 16 110 220
90% 16 110 234
70% 16 110 257
50% 38 301 68
40% 38 301 90
30% 38 301 110
Entity #14: Chains: N - 50S ribosomal protein L17 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 110 154
95% 16 110 222
90% 16 110 236
70% 16 110 259
50% 39 301 59
40% 39 303 77
30% 39 305 99
Entity #15: Chains: O - 50S ribosomal protein L18 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 110 155
95% 16 110 223
90% 16 110 237
70% 16 110 260
50% 38 298 69
40% 38 298 93
30% 38 298 113
Entity #16: Chains: P - 50S ribosomal protein L19 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 110 157
95% 16 110 225
90% 16 110 239
70% 16 110 262
50% 16 112 295
40% 16 112 320
30% 16 112 337
Entity #17: Chains: Q - 50S ribosomal protein L20 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 111 146
95% 16 111 212
90% 16 111 227
70% 16 111 250
50% 39 304 60
40% 39 305 79
30% 39 305 101
Entity #18: Chains: R - 50S ribosomal protein L21 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 107 175
95% 16 107 248
90% 16 107 259
70% 16 107 282
50% 16 107 318
40% 38 299 92
30% 38 299 112
Entity #19: Chains: S - 50S ribosomal protein L22 protein, length: 110 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 110 156
95% 16 110 224
90% 16 110 238
70% 16 110 261
50% 40 284 79
40% 40 284 103
30% 40 286 125
Entity #2: Chains: A - 23S rRNA rna, length: 2904 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 50S ribosomal protein L23 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 114 135
95% 16 114 198
90% 16 114 213
70% 16 114 240
50% 16 114 286
40% 38 305 82
30% 94 383 70
Entity #21: Chains: U - 50S ribosomal protein L24 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 113 139
95% 16 113 203
90% 16 113 216
70% 16 113 243
50% 16 113 290
40% 38 279 109
30% 38 281 130
Entity #22: Chains: V - 50S ribosomal protein L25 protein, length: 94 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 116 132
95% 17 116 193
90% 17 116 207
70% 17 116 236
50% 17 116 281
40% 17 116 311
30% 17 116 328
Entity #23: Chains: W - 50S ribosomal protein L27 protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 110 158
95% 16 110 227
90% 16 110 241
70% 16 137 196
50% 39 302 63
40% 39 302 83
30% 39 302 103
Entity #24: Chains: X - 50S ribosomal protein L28 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 95 213
95% 16 95 300
90% 16 95 320
70% 16 95 340
50% 16 95 377
40% 16 95 397
30% 16 95 407
Entity #25: Chains: Y - 50S ribosomal protein L29 protein, length: 63 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 114 136
95% 16 114 199
90% 16 114 214
70% 16 114 241
50% 16 114 287
40% 38 274 115
30% 38 298 114
Entity #26: Chains: Z - 50S ribosomal protein L30 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 111 147
95% 16 111 213
90% 16 111 228
70% 16 111 251
50% 16 112 297
40% 39 303 86
30% 39 303 106
Entity #27: Chains: 0 - 50S ribosomal protein L32 protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 108 172
95% 16 108 245
90% 16 108 256
70% 16 108 278
50% 16 108 315
40% 38 296 96
30% 38 296 117
Entity #28: Chains: 1 - 50S ribosomal protein L33 protein, length: 55 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 111 148
95% 16 111 214
90% 16 111 229
70% 16 111 252
50% 16 131 251
40% 38 294 97
30% 38 294 118
Entity #29: Chains: 2 - 50S ribosomal protein L34 protein, length: 46 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 106 183
95% 16 106 257
90% 16 106 270
70% 16 132 209
50% 16 134 240
40% 16 134 267
30% 16 134 291
Entity #3: Chains: C - 50S ribosomal protein L2 protein, length: 273 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 108 163
95% 16 108 233
90% 16 108 246
70% 16 108 268
50% 38 297 70
40% 38 297 94
30% 38 297 115
Entity #30: Chains: 3 - 50S ribosomal protein L35 protein, length: 65 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 106 182
95% 16 106 256
90% 16 106 269
70% 16 106 293
50% 16 106 327
40% 16 106 350
30% 16 106 362
Entity #31: Chains: 4 - 50S ribosomal protein L36 protein, length: 38 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 108 173
95% 16 108 246
90% 16 108 257
70% 16 108 279
50% 34 252 102
40% 34 252 128
30% 34 252 149
Entity #4: Chains: D - 50S ribosomal protein L3 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 111 143
95% 16 111 209
90% 16 111 224
70% 16 111 247
50% 38 302 66
40% 38 302 88
30% 38 303 107
Entity #5: Chains: E - 50S ribosomal protein L4 protein, length: 201 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 110 149
95% 16 110 218
90% 16 110 232
70% 16 110 255
50% 16 110 304
40% 17 113 313
30% 39 304 104
Entity #6: Chains: F - 50S ribosomal protein L5 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 113 137
95% 16 113 202
90% 16 113 215
70% 16 113 242
50% 40 302 64
40% 40 302 84
30% 40 302 105
Entity #7: Chains: G - 50S ribosomal protein L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 110 150
95% 16 110 219
90% 16 110 233
70% 16 110 256
50% 16 110 305
40% 39 306 80
30% 107 432 55
Entity #8: Chains: H - 50S ribosomal protein L9 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 5416
95% 8 9 6029
90% 8 9 6014
70% 8 9 5848
50% 11 20 2216
40% 11 22 2042
30% 11 22 1938
Entity #9: Chains: I - 50S ribosomal protein L11 protein, length: 142 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 114 133
95% 16 114 197
90% 16 114 212
70% 16 114 239
50% 23 200 127
40% 23 203 151
30% 23 205 174
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.