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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KIY
Cluster # 245 Members. Sequence cutoff: 90% Cluster size: 108 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4TPC 9 I 30S ribosomal protein S9 83333  
2 4TPE 9 I 30S ribosomal protein S9 83333  
3 4TP8 9 I 30S ribosomal protein S9 83333  
4 4TPA 9 I 30S ribosomal protein S9 83333  
5 4GD1 9 I 30S ribosomal protein S9 83333  
6 4GD2 9 I 30S ribosomal protein S9 83333  
7 4KJ6 9 I 30S ribosomal protein S9 83333  
8 4KJ8 9 I 30S ribosomal protein S9 83333  
9 4KJA 9 I 30S ribosomal protein S9 83333  
10 4KJC 9 I 30S ribosomal protein S9 83333  
11 4TP0 9 I 30S ribosomal protein S9 83333  
12 4TP2 9 I 30S ribosomal protein S9 83333  
13 4KIY 9 I 30S ribosomal protein S9 83333  
14 4KJ0 9 I 30S ribosomal protein S9 83333  
15 4KJ2 9 I 30S ribosomal protein S9 83333  
16 4KJ4 9 I 30S ribosomal protein S9 83333  
17 4TP4 9 I 30S ribosomal protein S9 83333  
18 4TP6 9 I 30S ribosomal protein S9 83333  
19 3OFA 9 I 30S ribosomal protein S9 83333  
20 3OFB 9 I 30S ribosomal protein S9 83333  
21 3OFO 9 I 30S ribosomal protein S9 83333  
22 3OFP 9 I 30S ribosomal protein S9 83333  
23 3I1O 8 I 30S ribosomal protein S9 83333  
24 3I1M 8 I 30S ribosomal protein S9 83333  
25 3OR9 9 I 30S ribosomal protein S9 83333  
26 3ORA 9 I 30S ribosomal protein S9 83333  
27 3OFX 9 I 30S ribosomal protein S9 83333  
28 3OFY 9 I 30S ribosomal protein S9 83333  
29 3OAQ 9 I 30S ribosomal protein S9 83333  
30 3OAR 9 I 30S ribosomal protein S9 83333  
31 4TOU 9 I 30S ribosomal protein S9 83333  
32 4TOW 9 I 30S ribosomal protein S9 83333  
33 4TOL 9 I 30S ribosomal protein S9 83333  
34 4TON 9 I 30S ribosomal protein S9 83333  
35 4GAQ 9 I 30S ribosomal protein S9 83333  
36 4GAS 9 I 30S ribosomal protein S9 83333  
37 3SFS 9 I 30S ribosomal protein S9 562  
38 4PE9 9 I 30S ribosomal protein S9 83333  
39 4PEA 9 I 30S ribosomal protein S9 83333  
40 3I1Q 8 I 30S ribosomal protein S9 83333  
41 3I1S 8 I 30S ribosomal protein S9 83333  
42 3I1Z 8 I 30S ribosomal protein S9 83333  
43 3I21 8 I 30S ribosomal protein S9 83333  
44 2QAL 8 I 30S ribosomal protein S9 562  
45 2QAN 8 I 30S ribosomal protein S9 562  
46 3UOQ 9 I 30S ribosomal protein S9 562  
47 2QBD 8 I 30S ribosomal protein S9 562  
48 2QBF 7 I 30S ribosomal protein S9 562  
49 2I2P 11 I 30S ribosomal protein S9 562  
50 2I2U 11 I 30S ribosomal protein S9 562  
51 2QOY 8 I 30S ribosomal protein S9 562  
52 2QP0 15 I 30S ribosomal protein S9 562  
53 3DF1 8 I 30S ribosomal protein S9 562  
54 3DF3 8 I 30S ribosomal protein S9 562  
55 1VS5 8 I 30S RIBOSOMAL PROTEIN S9 562  
56 1VS7 8 I 30S RIBOSOMAL PROTEIN S9 562  
57 2AW7 8 I 30S ribosomal protein S9 562  
58 2AVY 8 I 30S ribosomal protein S9 562  
59 2VHO 9 I 30S RIBOSOMAL PROTEIN S9 RESIDUES 2-130 562  
60 2VHP 9 I 30S RIBOSOMAL PROTEIN S9 RESIDUES 2-130 562  
61 2QB9 8 I 30S ribosomal protein S9 562  
62 2QBB 8 I 30S ribosomal protein S9 562  
63 2QOU 8 I 30S ribosomal protein S9 562  
64 2QOW 15 I 30S ribosomal protein S9 562  
65 2QBH 8 I 30S ribosomal protein S9 562  
66 2QBJ 8 I 30S ribosomal protein S9 562  
67 2Z4K 8 I 30S ribosomal protein S9 562  
68 2Z4M 8 I 30S ribosomal protein S9 562  
69 3J5X 9 I 30S ribosomal protein S9 562  
70 3J5T 9 I 30S ribosomal protein S9 562  
71 3J5N 9 I 30S ribosomal protein S9 83333  
72 3J4V 8 I 30S ribosomal protein S9 83333  
73 3J4W 8 I 30S ribosomal protein S9 83333  
74 3J4Y 8 I 30S ribosomal protein S9 83333  
75 3J4Z 8 I 30S ribosomal protein S9 83333  
76 3J53 8 I 30S ribosomal protein S9 83333  
77 3J55 8 I 30S ribosomal protein S9 83333  
78 3J57 8 I 30S ribosomal protein S9 83333  
79 3J59 8 I 30S ribosomal protein S9 83333  
80 3J5B 8 I 30S ribosomal protein S9 83333  
81 3J5D 8 I 30S ribosomal protein S9 83333  
82 3J5F 8 I 30S ribosomal protein S9 83333  
83 3J5H 8 I 30S ribosomal protein S9 83333  
84 3J5J 8 I 30S ribosomal protein S9 83333  
85 3J36 20 I 30S ribosomal protein S9 562  
86 3J18 9 I 30S ribosomal protein S9 562  
87 4ADV 9 I 30S RIBOSOMAL PROTEIN S9 562  
88 3J13 11 K 30S ribosomal protein S9 562  
89 3J0X 12 L 30S ribosomal protein S9 562  
90 3J0Z 12 L 30S ribosomal protein S9 562  
91 3J10 12 L 30S ribosomal protein S9 562  
92 3J0U 12 L 30S ribosomal protein S9 562  
93 3J0V 12 L 30S ribosomal protein S9 562  
94 4A2I 9 I 30S RIBOSOMAL PROTEIN S9 562  
95 2YKR 9 I 30S RIBOSOMAL PROTEIN S9 RESIDUES 4-130 668369  
96 3J00 13 I 30S ribosomal protein S9 83333  
97 3IZV 12 M 30S ribosomal protein S9 83333  
98 3IZW 12 M 30S ribosomal protein S9 83333  
99 2WWL 9 I 30S RIBOSOMAL PROTEIN S9 RESIDUES 4-130 562  
100 3KC4 9 I 30S ribosomal protein S9 83333  
101 3IY8 5 I 30S ribosomal protein S9 83333  
102 3FIH 20 I 30S ribosomal protein S9 562  
103 3E1A 22 W 30S ribosomal protein S9 562  
104 3E1C 22 W 30S ribosomal protein S9 562  
105 2GY9 10 I 30S ribosomal subunit protein S9 562  
106 2GYB 10 I 30S ribosomal subunit protein S9 562  
107 1P87 9 I 30S RIBOSOMAL PROTEIN S9 562  
108 1P6G 8 I 30S RIBOSOMAL PROTEIN S9 562  
 
Sequence Clusters for the Sequence Entities in PDB 4KIY
Entity #1: Chains: B - 30S ribosomal protein S2 protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 106 174
95% 13 106 248
90% 13 106 259
70% 13 106 285
50% 13 106 315
40% 52 363 55
30% 52 363 77
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 108 164
95% 14 108 237
90% 14 108 247
70% 17 112 229
50% 58 369 34
40% 58 369 48
30% 58 374 67
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 163
95% 13 108 236
90% 13 108 246
70% 13 108 270
50% 52 363 42
40% 56 403 39
30% 56 403 53
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 112 138
95% 13 112 202
90% 13 112 215
70% 52 375 24
50% 52 375 33
40% 52 375 47
30% 52 375 71
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 152
95% 13 109 220
90% 13 109 233
70% 13 109 259
50% 52 365 39
40% 52 365 53
30% 54 401 57
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 103 190
95% 13 105 257
90% 13 105 267
70% 13 105 291
50% 13 105 321
40% 13 106 341
30% 13 106 351
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 82 245
95% 14 110 213
90% 14 110 225
70% 14 110 251
50% 57 376 32
40% 57 376 45
30% 57 376 69
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 82 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 166
95% 13 108 239
90% 13 108 249
70% 13 108 272
50% 13 108 305
40% 13 108 332
30% 52 363 78
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 165
95% 13 108 238
90% 13 108 248
70% 13 108 271
50% 13 111 291
40% 13 111 315
30% 13 113 324
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 351
95% 5 65 480
90% 5 65 502
70% 5 65 535
50% 5 65 580
40% 5 65 612
30% 5 65 615
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 169
95% 13 107 243
90% 13 107 253
70% 13 107 277
50% 53 366 38
40% 53 366 52
30% 53 366 75
Entity #2: Chains: A - 16S rRNA rna, length: 1542 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 170
95% 13 107 244
90% 13 107 254
70% 13 107 278
50% 13 107 310
40% 13 107 336
30% 13 107 346
Entity #21: Chains: U - 30S ribosomal protein S21 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 61 361
95% 5 61 519
90% 5 61 543
70% 5 61 580
50% 5 61 624
40% 5 61 650
30% 5 61 652
Entity #22: Chains: V - Elongation factor G protein, length: 704 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 12 3092
95% 5 12 3739
90% 5 12 3781
70% 5 12 3785
50% 18 52 672
40% 18 52 697
30% 20 54 670
Entity #23: Chains: W - Viomycin protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 346
95% 5 63 496
90% 5 63 519
70% 5 63 556
50% 41 282 81
40% 41 282 101
30% 41 282 123
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 168
95% 13 107 241
90% 13 107 251
70% 13 107 275
50% 52 363 40
40% 52 364 54
30% 52 364 76
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 160
95% 13 108 231
90% 13 108 242
70% 13 108 265
50% 53 367 37
40% 53 367 51
30% 53 369 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 349
95% 5 63 500
90% 5 63 523
70% 5 63 563
50% 5 63 609
40% 5 63 635
30% 5 63 635
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 62 353
95% 5 62 508
90% 5 62 531
70% 5 62 570
50% 5 62 615
40% 5 62 640
30% 5 62 642
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 109 144
95% 14 109 211
90% 14 109 223
70% 14 109 249
50% 55 369 36
40% 56 371 49
30% 59 408 50
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 162
95% 13 108 235
90% 13 108 245
70% 13 108 269
50% 52 363 41
40% 52 363 56
30% 54 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.