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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KIY
Cluster # 237 Members. Sequence cutoff: 90% Cluster size: 111 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4TPC 8 H 30S ribosomal protein S8 83333  
2 4TPE 8 H 30S ribosomal protein S8 83333  
3 1S03 2 G, H 30S ribosomal protein S8 562  
4 4TP8 8 H 30S ribosomal protein S8 83333  
5 4TPA 8 H 30S ribosomal protein S8 83333  
6 4GD1 8 H 30S ribosomal protein S8 83333  
7 4GD2 8 H 30S ribosomal protein S8 83333  
8 4KJ6 8 H 30S ribosomal protein S8 83333  
9 4KJ8 8 H 30S ribosomal protein S8 83333  
10 4KJA 8 H 30S ribosomal protein S8 83333  
11 4KJC 8 H 30S ribosomal protein S8 83333  
12 4TP0 8 H 30S ribosomal protein S8 83333  
13 4TP2 8 H 30S ribosomal protein S8 83333  
14 4KIY 8 H 30S ribosomal protein S8 83333  
15 4KJ0 8 H 30S ribosomal protein S8 83333  
16 4KJ2 8 H 30S ribosomal protein S8 83333  
17 4KJ4 8 H 30S ribosomal protein S8 83333  
18 4WAO 8 H 30S ribosomal protein S8 83333  
19 4WAQ 8 H 30S ribosomal protein S8 83333  
20 4TP4 8 H 30S ribosomal protein S8 83333  
21 4TP6 8 H 30S ribosomal protein S8 83333  
22 3OFA 8 H 30S ribosomal protein S8 83333  
23 3OFB 8 H 30S ribosomal protein S8 83333  
24 3OFO 8 H 30S ribosomal protein S8 83333  
25 3OFP 8 H 30S ribosomal protein S8 83333  
26 3I1O 7 H 30S ribosomal protein S8 83333  
27 3I1M 7 H 30S ribosomal protein S8 83333  
28 3OR9 8 H 30S ribosomal protein S8 83333  
29 3ORA 8 H 30S ribosomal protein S8 83333  
30 3OFX 8 H 30S ribosomal protein S8 83333  
31 3OFY 8 H 30S ribosomal protein S8 83333  
32 3OAQ 8 H 30S ribosomal protein S8 83333  
33 3OAR 8 H 30S ribosomal protein S8 83333  
34 4TOU 8 H 30S ribosomal protein S8 83333  
35 4TOW 8 H 30S ribosomal protein S8 83333  
36 4TOL 8 H 30S ribosomal protein S8 83333  
37 4TON 8 H 30S ribosomal protein S8 83333  
38 4GAQ 8 H 30S ribosomal protein S8 83333  
39 4GAS 8 H 30S ribosomal protein S8 83333  
40 3SFS 8 H 30S ribosomal protein S8 562  
41 4PE9 8 H 30S ribosomal protein S8 83333  
42 4PEA 8 H 30S ribosomal protein S8 83333  
43 3I1Q 7 H 30S ribosomal protein S8 83333  
44 3I1S 7 H 30S ribosomal protein S8 83333  
45 3I1Z 7 H 30S ribosomal protein S8 83333  
46 3I21 7 H 30S ribosomal protein S8 83333  
47 2QAL 7 H 30S ribosomal protein S8 562  
48 2QAN 7 H 30S ribosomal protein S8 562  
49 3UOQ 8 H 30S ribosomal protein S8 562  
50 2QBD 7 H 30S ribosomal protein S8 562  
51 2QBF 6 H 30S ribosomal protein S8 562  
52 2I2P 10 H 30S ribosomal protein S8 562  
53 2I2U 10 H 30S ribosomal protein S8 562  
54 2QOY 7 H 30S ribosomal protein S8 562  
55 2QP0 5 H 30S ribosomal protein S8 562  
56 3DF1 7 H 30S ribosomal protein S8 562  
57 3DF3 7 H 30S ribosomal protein S8 562  
58 1VS5 7 H 30S RIBOSOMAL PROTEIN S8 562  
59 1VS7 7 H 30S RIBOSOMAL PROTEIN S8 562  
60 2AW7 7 H 30S ribosomal protein S8 562  
61 2AVY 7 H 30S ribosomal protein S8 562  
62 2VHO 8 H 30S RIBOSOMAL PROTEIN S8 RESIDUES 2-130 562  
63 2VHP 8 H 30S RIBOSOMAL PROTEIN S8 RESIDUES 2-130 562  
64 2QB9 7 H 30S ribosomal protein S8 562  
65 2QBB 7 H 30S ribosomal protein S8 562  
66 2QOU 7 H 30S ribosomal protein S8 562  
67 2QOW 5 H 30S ribosomal protein S8 562  
68 2QBH 7 H 30S ribosomal protein S8 562  
69 2QBJ 7 H 30S ribosomal protein S8 562  
70 2Z4K 7 H 30S ribosomal protein S8 562  
71 2Z4M 7 H 30S ribosomal protein S8 562  
72 3J5X 8 H 30S ribosomal protein S8 562  
73 3J5T 8 H 30S ribosomal protein S8 562  
74 3J5N 8 H 30S ribosomal protein S8 83333  
75 3J4V 7 H 30S ribosomal protein S8 83333  
76 3J4W 7 H 30S ribosomal protein S8 83333  
77 3J4Y 7 H 30S ribosomal protein S8 83333  
78 3J4Z 7 H 30S ribosomal protein S8 83333  
79 3J53 7 H 30S ribosomal protein S8 83333  
80 3J55 7 H 30S ribosomal protein S8 83333  
81 3J57 7 H 30S ribosomal protein S8 83333  
82 3J59 7 H 30S ribosomal protein S8 83333  
83 3J5B 7 H 30S ribosomal protein S8 83333  
84 3J5D 7 H 30S ribosomal protein S8 83333  
85 3J5F 7 H 30S ribosomal protein S8 83333  
86 3J5H 7 H 30S ribosomal protein S8 83333  
87 3J5J 7 H 30S ribosomal protein S8 83333  
88 3J36 19 H 30S ribosomal protein S8 562  
89 3J18 8 H 30S ribosomal protein S8 562  
90 4ADV 8 H 30S RIBOSOMAL PROTEIN S8 562  
91 3J13 10 J 30S ribosomal protein S8 562  
92 3J0X 11 K 30S ribosomal protein S8 562  
93 3J0Z 11 K 30S ribosomal protein S8 562  
94 3J10 11 K 30S ribosomal protein S8 562  
95 3J0U 11 K 30S ribosomal protein S8 562  
96 3J0V 11 K 30S ribosomal protein S8 562  
97 4A2I 8 H 30S RIBOSOMAL PROTEIN S8 562  
98 2YKR 8 H 30S RIBOSOMAL PROTEIN S8 RESIDUES 2-130 668369  
99 3J00 12 H 30S ribosomal protein S8 83333  
100 3IZV 11 L 30S ribosomal protein S8 83333  
101 3IZW 11 L 30S ribosomal protein S8 83333  
102 2WWL 8 H 30S RIBOSOMAL PROTEIN S8 562  
103 3KC4 8 H 30S ribosomal protein S8 83333  
104 3IY8 4 H 30S ribosomal protein S8 83333  
105 3FIH 19 H 30S ribosomal protein S8 562  
106 3E1A 21 V 30S ribosomal protein S8 562  
107 3E1C 21 V 30S ribosomal protein S8 562  
108 2GY9 9 H 30S ribosomal subunit protein S8 562  
109 2GYB 9 H 30S ribosomal subunit protein S8 562  
110 1P87 8 H 30S RIBOSOMAL PROTEIN S8 562  
111 1P6G 7 H 30S RIBOSOMAL PROTEIN S8 562  
 
Sequence Clusters for the Sequence Entities in PDB 4KIY
Entity #1: Chains: B - 30S ribosomal protein S2 protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 179
95% 13 108 252
90% 13 108 263
70% 13 108 284
50% 13 108 316
40% 60 378 53
30% 60 378 75
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 110 167
95% 14 110 238
90% 14 110 251
70% 17 114 234
50% 66 384 34
40% 66 384 46
30% 66 389 65
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 166
95% 13 110 237
90% 13 110 250
70% 13 110 273
50% 60 378 41
40% 78 454 34
30% 78 454 44
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 114 149
95% 13 114 215
90% 13 114 228
70% 60 390 24
50% 60 390 33
40% 60 390 45
30% 60 390 68
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 111 161
95% 13 111 228
90% 13 111 243
70% 13 111 265
50% 60 380 38
40% 60 380 51
30% 76 452 47
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 105 188
95% 13 107 258
90% 13 107 269
70% 13 107 291
50% 13 107 325
40% 13 108 347
30% 13 108 358
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 84 246
95% 14 112 225
90% 14 112 238
70% 14 112 262
50% 65 391 32
40% 65 391 43
30% 65 391 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 82 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 169
95% 13 110 240
90% 13 110 253
70% 13 110 275
50% 13 110 310
40% 13 110 331
30% 60 378 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 168
95% 13 110 239
90% 13 110 252
70% 13 110 274
50% 13 113 297
40% 13 113 321
30% 13 115 334
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 354
95% 5 65 491
90% 5 65 514
70% 5 65 554
50% 5 65 616
40% 5 65 653
30% 5 65 657
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 174
95% 13 109 247
90% 13 109 259
70% 13 109 280
50% 61 381 37
40% 61 381 49
30% 61 381 72
Entity #2: Chains: A - 16S rRNA rna, length: 1542 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 175
95% 13 109 248
90% 13 109 260
70% 13 109 281
50% 13 109 314
40% 13 109 337
30% 13 109 351
Entity #21: Chains: U - 30S ribosomal protein S21 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 61 364
95% 5 61 528
90% 5 61 555
70% 5 61 604
50% 5 61 671
40% 5 61 702
30% 5 61 705
Entity #22: Chains: V - Elongation factor G protein, length: 704 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 12 3202
95% 5 12 3846
90% 5 12 3880
70% 5 12 3877
50% 18 54 691
40% 18 54 725
30% 20 56 696
Entity #23: Chains: W - Viomycin protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 349
95% 5 63 509
90% 5 63 533
70% 5 63 573
50% 49 293 74
40% 49 293 99
30% 49 293 119
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 172
95% 13 109 245
90% 13 109 257
70% 13 109 278
50% 60 378 39
40% 60 379 52
30% 60 379 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 163
95% 13 110 234
90% 13 110 248
70% 13 110 270
50% 61 382 36
40% 61 382 48
30% 61 384 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 352
95% 5 63 513
90% 5 63 537
70% 5 63 578
50% 5 63 655
40% 5 63 681
30% 5 63 680
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 62 356
95% 5 62 520
90% 5 62 544
70% 5 62 587
50% 5 62 662
40% 5 62 689
30% 5 62 689
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 111 158
95% 14 111 224
90% 14 111 237
70% 14 111 261
50% 63 384 35
40% 64 386 47
30% 81 459 43
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 165
95% 13 110 236
90% 13 110 249
70% 13 110 272
50% 60 378 40
40% 60 378 54
30% 76 450 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.