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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KIY
Cluster # 262 Members. Sequence cutoff: 70% Cluster size: 109 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4TPC 8 H 30S ribosomal protein S8 83333  
2 4TPE 8 H 30S ribosomal protein S8 83333  
3 1S03 2 G, H 30S ribosomal protein S8 562  
4 4TP8 8 H 30S ribosomal protein S8 83333  
5 4TPA 8 H 30S ribosomal protein S8 83333  
6 4GD1 8 H 30S ribosomal protein S8 83333  
7 4GD2 8 H 30S ribosomal protein S8 83333  
8 4KJ6 8 H 30S ribosomal protein S8 83333  
9 4KJ8 8 H 30S ribosomal protein S8 83333  
10 4KJA 8 H 30S ribosomal protein S8 83333  
11 4KJC 8 H 30S ribosomal protein S8 83333  
12 4TP0 8 H 30S ribosomal protein S8 83333  
13 4TP2 8 H 30S ribosomal protein S8 83333  
14 4KIY 8 H 30S ribosomal protein S8 83333  
15 4KJ0 8 H 30S ribosomal protein S8 83333  
16 4KJ2 8 H 30S ribosomal protein S8 83333  
17 4KJ4 8 H 30S ribosomal protein S8 83333  
18 4TP4 8 H 30S ribosomal protein S8 83333  
19 4TP6 8 H 30S ribosomal protein S8 83333  
20 3OFA 8 H 30S ribosomal protein S8 83333  
21 3OFB 8 H 30S ribosomal protein S8 83333  
22 3OFO 8 H 30S ribosomal protein S8 83333  
23 3OFP 8 H 30S ribosomal protein S8 83333  
24 3I1O 7 H 30S ribosomal protein S8 83333  
25 3I1M 7 H 30S ribosomal protein S8 83333  
26 3OR9 8 H 30S ribosomal protein S8 83333  
27 3ORA 8 H 30S ribosomal protein S8 83333  
28 3OFX 8 H 30S ribosomal protein S8 83333  
29 3OFY 8 H 30S ribosomal protein S8 83333  
30 3OAQ 8 H 30S ribosomal protein S8 83333  
31 3OAR 8 H 30S ribosomal protein S8 83333  
32 4TOU 8 H 30S ribosomal protein S8 83333  
33 4TOW 8 H 30S ribosomal protein S8 83333  
34 4TOL 8 H 30S ribosomal protein S8 83333  
35 4TON 8 H 30S ribosomal protein S8 83333  
36 4GAQ 8 H 30S ribosomal protein S8 83333  
37 4GAS 8 H 30S ribosomal protein S8 83333  
38 3SFS 8 H 30S ribosomal protein S8 562  
39 4PE9 8 H 30S ribosomal protein S8 83333  
40 4PEA 8 H 30S ribosomal protein S8 83333  
41 3I1Q 7 H 30S ribosomal protein S8 83333  
42 3I1S 7 H 30S ribosomal protein S8 83333  
43 3I1Z 7 H 30S ribosomal protein S8 83333  
44 3I21 7 H 30S ribosomal protein S8 83333  
45 2QAL 7 H 30S ribosomal protein S8 562  
46 2QAN 7 H 30S ribosomal protein S8 562  
47 3UOQ 8 H 30S ribosomal protein S8 562  
48 2QBD 7 H 30S ribosomal protein S8 562  
49 2QBF 6 H 30S ribosomal protein S8 562  
50 2I2P 10 H 30S ribosomal protein S8 562  
51 2I2U 10 H 30S ribosomal protein S8 562  
52 2QOY 7 H 30S ribosomal protein S8 562  
53 2QP0 5 H 30S ribosomal protein S8 562  
54 3DF1 7 H 30S ribosomal protein S8 562  
55 3DF3 7 H 30S ribosomal protein S8 562  
56 1VS5 7 H 30S RIBOSOMAL PROTEIN S8 562  
57 1VS7 7 H 30S RIBOSOMAL PROTEIN S8 562  
58 2AW7 7 H 30S ribosomal protein S8 562  
59 2AVY 7 H 30S ribosomal protein S8 562  
60 2VHO 8 H 30S RIBOSOMAL PROTEIN S8 RESIDUES 2-130 562  
61 2VHP 8 H 30S RIBOSOMAL PROTEIN S8 RESIDUES 2-130 562  
62 2QB9 7 H 30S ribosomal protein S8 562  
63 2QBB 7 H 30S ribosomal protein S8 562  
64 2QOU 7 H 30S ribosomal protein S8 562  
65 2QOW 5 H 30S ribosomal protein S8 562  
66 2QBH 7 H 30S ribosomal protein S8 562  
67 2QBJ 7 H 30S ribosomal protein S8 562  
68 2Z4K 7 H 30S ribosomal protein S8 562  
69 2Z4M 7 H 30S ribosomal protein S8 562  
70 3J5X 8 H 30S ribosomal protein S8 562  
71 3J5T 8 H 30S ribosomal protein S8 562  
72 3J5N 8 H 30S ribosomal protein S8 83333  
73 3J4V 7 H 30S ribosomal protein S8 83333  
74 3J4W 7 H 30S ribosomal protein S8 83333  
75 3J4Y 7 H 30S ribosomal protein S8 83333  
76 3J4Z 7 H 30S ribosomal protein S8 83333  
77 3J53 7 H 30S ribosomal protein S8 83333  
78 3J55 7 H 30S ribosomal protein S8 83333  
79 3J57 7 H 30S ribosomal protein S8 83333  
80 3J59 7 H 30S ribosomal protein S8 83333  
81 3J5B 7 H 30S ribosomal protein S8 83333  
82 3J5D 7 H 30S ribosomal protein S8 83333  
83 3J5F 7 H 30S ribosomal protein S8 83333  
84 3J5H 7 H 30S ribosomal protein S8 83333  
85 3J5J 7 H 30S ribosomal protein S8 83333  
86 3J36 19 H 30S ribosomal protein S8 562  
87 3J18 8 H 30S ribosomal protein S8 562  
88 4ADV 8 H 30S RIBOSOMAL PROTEIN S8 562  
89 3J13 10 J 30S ribosomal protein S8 562  
90 3J0X 11 K 30S ribosomal protein S8 562  
91 3J0Z 11 K 30S ribosomal protein S8 562  
92 3J10 11 K 30S ribosomal protein S8 562  
93 3J0U 11 K 30S ribosomal protein S8 562  
94 3J0V 11 K 30S ribosomal protein S8 562  
95 4A2I 8 H 30S RIBOSOMAL PROTEIN S8 562  
96 2YKR 8 H 30S RIBOSOMAL PROTEIN S8 RESIDUES 2-130 668369  
97 3J00 12 H 30S ribosomal protein S8 83333  
98 3IZV 11 L 30S ribosomal protein S8 83333  
99 3IZW 11 L 30S ribosomal protein S8 83333  
100 2WWL 8 H 30S RIBOSOMAL PROTEIN S8 562  
101 3KC4 8 H 30S ribosomal protein S8 83333  
102 3IY8 4 H 30S ribosomal protein S8 83333  
103 3FIH 19 H 30S ribosomal protein S8 562  
104 3E1A 21 V 30S ribosomal protein S8 562  
105 3E1C 21 V 30S ribosomal protein S8 562  
106 2GY9 9 H 30S ribosomal subunit protein S8 562  
107 2GYB 9 H 30S ribosomal subunit protein S8 562  
108 1P87 8 H 30S RIBOSOMAL PROTEIN S8 562  
109 1P6G 7 H 30S RIBOSOMAL PROTEIN S8 562  
 
Sequence Clusters for the Sequence Entities in PDB 4KIY
Entity #1: Chains: B - 30S ribosomal protein S2 protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 106 182
95% 13 106 257
90% 13 106 269
70% 13 106 292
50% 13 106 325
40% 60 376 53
30% 60 376 75
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 108 172
95% 14 108 245
90% 14 108 256
70% 17 112 236
50% 66 382 34
40% 66 382 45
30% 66 387 65
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 171
95% 13 108 244
90% 13 108 255
70% 13 108 278
50% 60 376 41
40% 78 450 35
30% 78 450 45
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 112 145
95% 13 112 211
90% 13 112 224
70% 60 388 24
50% 60 388 33
40% 60 388 44
30% 60 388 68
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 161
95% 13 109 231
90% 13 109 245
70% 13 109 267
50% 60 378 38
40% 60 378 51
30% 76 448 49
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 103 193
95% 13 105 265
90% 13 105 277
70% 13 105 298
50% 13 105 331
40% 13 106 351
30% 13 106 363
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 82 248
95% 14 110 227
90% 14 110 241
70% 14 110 263
50% 65 389 32
40% 65 389 43
30% 65 389 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 82 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 175
95% 13 108 248
90% 13 108 259
70% 13 108 281
50% 13 108 316
40% 13 108 341
30% 60 376 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 174
95% 13 108 247
90% 13 108 258
70% 13 108 280
50% 13 111 301
40% 13 111 324
30% 13 113 337
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 354
95% 5 65 487
90% 5 65 510
70% 5 65 553
50% 5 65 614
40% 5 65 647
30% 5 65 649
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 177
95% 13 107 252
90% 13 107 263
70% 13 107 285
50% 61 379 37
40% 61 379 49
30% 61 379 72
Entity #2: Chains: A - 16S rRNA rna, length: 1542 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 178
95% 13 107 253
90% 13 107 264
70% 13 107 286
50% 13 107 321
40% 13 107 345
30% 13 107 358
Entity #21: Chains: U - 30S ribosomal protein S21 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 61 364
95% 5 61 525
90% 5 61 551
70% 5 61 598
50% 5 61 666
40% 5 61 696
30% 5 61 699
Entity #22: Chains: V - Elongation factor G protein, length: 704 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 12 3177
95% 5 12 3822
90% 5 12 3856
70% 5 12 3854
50% 18 54 689
40% 18 54 720
30% 20 56 690
Entity #23: Chains: W - Viomycin protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 349
95% 5 63 507
90% 5 63 530
70% 5 63 571
50% 49 293 73
40% 49 293 98
30% 49 293 119
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 176
95% 13 107 249
90% 13 107 260
70% 13 107 283
50% 60 376 39
40% 60 377 52
30% 60 377 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 168
95% 13 108 239
90% 13 108 251
70% 13 108 273
50% 61 380 36
40% 61 380 48
30% 61 382 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 352
95% 5 63 511
90% 5 63 534
70% 5 63 576
50% 5 63 649
40% 5 63 674
30% 5 63 671
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 62 356
95% 5 62 517
90% 5 62 540
70% 5 62 584
50% 5 62 656
40% 5 62 682
30% 5 62 683
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 109 158
95% 14 109 226
90% 14 109 240
70% 14 109 262
50% 63 382 35
40% 64 384 46
30% 81 455 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 170
95% 13 108 243
90% 13 108 254
70% 13 108 277
50% 60 376 40
40% 60 376 54
30% 76 446 52
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.