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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KIY
Cluster # 619 Members. Sequence cutoff: 50% Cluster size: 62 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4KJ6 7 G 30S ribosomal protein S7 83333  
2 4KJ8 7 G 30S ribosomal protein S7 83333  
3 4KJA 7 G 30S ribosomal protein S7 83333  
4 4KJC 7 G 30S ribosomal protein S7 83333  
5 4KIY 7 G 30S ribosomal protein S7 83333  
6 4KJ0 7 G 30S ribosomal protein S7 83333  
7 4KJ2 7 G 30S ribosomal protein S7 83333  
8 4KJ4 7 G 30S ribosomal protein S7 83333  
9 3I1O 6 G 30S ribosomal protein S7 83333  
10 3I1M 6 G 30S ribosomal protein S7 83333  
11 3OR9 7 G 30S ribosomal protein S7 83333  
12 3ORA 7 G 30S ribosomal protein S7 83333  
13 4GAQ 7 G 30S ribosomal protein S7 83333  
14 4GAS 7 G 30S ribosomal protein S7 83333  
15 3I1Q 6 G 30S ribosomal protein S7 83333  
16 3I1S 6 G 30S ribosomal protein S7 83333  
17 3I1Z 6 G 30S ribosomal protein S7 83333  
18 3I21 6 G 30S ribosomal protein S7 83333  
19 2QAL 6 G 30S ribosomal protein S7 562  
20 2QAN 6 G 30S ribosomal protein S7 562  
21 3UOQ 7 G 30S ribosomal protein S7 562  
22 2QBD 6 G 30S ribosomal protein S7 562  
23 2QBF 5 G 30S ribosomal protein S7 562  
24 2I2P 9 G 30S ribosomal protein S7 562  
25 2I2U 9 G 30S ribosomal protein S7 562  
26 2QOY 6 G 30S ribosomal protein S7 562  
27 2QP0 14 G 30S ribosomal protein S7 562  
28 3DF1 6 G 30S ribosomal protein S7 562  
29 3DF3 6 G 30S ribosomal protein S7 562  
30 1VS5 6 G 30S RIBOSOMAL PROTEIN S7 562  
31 1VS7 6 G 30S RIBOSOMAL PROTEIN S7 562  
32 2AW7 6 G 30S ribosomal protein S7 562  
33 2AVY 6 G 30S ribosomal protein S7 562  
34 2VHO 7 G 30S RIBOSOMAL PROTEIN S7 RESIDUES 2-156 562  
35 2VHP 7 G 30S RIBOSOMAL PROTEIN S7 RESIDUES 2-156 562  
36 2QB9 6 G 30S ribosomal protein S7 562  
37 2QBB 6 G 30S ribosomal protein S7 562  
38 2QOU 6 G 30S ribosomal protein S7 562  
39 2QOW 14 G 30S ribosomal protein S7 562  
40 2QBH 6 G 30S ribosomal protein S7 562  
41 2QBJ 6 G 30S ribosomal protein S7 562  
42 2Z4K 6 G 30S ribosomal protein S7 562  
43 2Z4M 6 G 30S ribosomal protein S7 562  
44 3J5X 7 G 30S ribosomal protein S7 562  
45 3J5T 7 G 30S ribosomal protein S7 562  
46 3J5N 7 G 30S ribosomal protein S7 83333  
47 3J36 18 G 30S ribosomal protein S7 562  
48 4ADV 7 G 30S RIBOSOMAL PROTEIN S7 562  
49 3J13 9 I 30S ribosomal protein S7 562  
50 3J0X 10 J 30S ribosomal protein S7 562  
51 3J0Z 10 J 30S ribosomal protein S7 562  
52 3J10 10 J 30S ribosomal protein S7 562  
53 3J0U 10 J 30S ribosomal protein S7 562  
54 3J0V 10 J 30S ribosomal protein S7 562  
55 3J00 11 G 30S ribosomal protein S7 83333  
56 3IZV 10 K 30S ribosomal protein S7 83333  
57 3IZW 10 K 30S ribosomal protein S7 83333  
58 3KC4 7 G 30S ribosomal protein S7 83333  
59 3E1A 20 U 30S ribosomal protein S7 562  
60 3E1C 20 U 30S ribosomal protein S7 562  
61 1P87 7 G 30S RIBOSOMAL PROTEIN S7 562  
62 1P6G 6 G 30S RIBOSOMAL PROTEIN S7 562  
 
Sequence Clusters for the Sequence Entities in PDB 4KIY
Entity #1: Chains: B - 30S ribosomal protein S2 protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 106 176
95% 13 106 250
90% 13 106 261
70% 13 106 286
50% 13 106 315
40% 52 368 55
30% 52 368 77
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 108 166
95% 14 108 239
90% 14 108 249
70% 17 112 233
50% 58 374 34
40% 58 374 46
30% 58 379 66
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 165
95% 13 108 238
90% 13 108 248
70% 13 108 271
50% 52 368 42
40% 56 408 40
30% 56 408 53
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 112 139
95% 13 112 204
90% 13 112 216
70% 52 380 24
50% 52 380 33
40% 52 380 45
30% 52 380 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 154
95% 13 109 223
90% 13 109 236
70% 13 109 260
50% 52 370 39
40% 52 370 53
30% 54 406 57
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 103 190
95% 13 105 260
90% 13 105 271
70% 13 105 293
50% 13 105 322
40% 13 106 341
30% 13 106 352
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 82 245
95% 14 110 215
90% 14 110 228
70% 14 110 252
50% 57 381 32
40% 57 381 43
30% 57 381 68
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 82 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 168
95% 13 108 241
90% 13 108 251
70% 13 108 273
50% 13 108 305
40% 13 108 332
30% 52 368 78
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 167
95% 13 108 240
90% 13 108 250
70% 13 108 272
50% 13 111 291
40% 13 111 316
30% 13 113 324
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 352
95% 5 65 485
90% 5 65 506
70% 5 65 541
50% 5 65 585
40% 5 65 616
30% 5 65 623
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 171
95% 13 107 245
90% 13 107 255
70% 13 107 278
50% 53 371 38
40% 53 371 51
30% 53 371 75
Entity #2: Chains: A - 16S rRNA rna, length: 1542 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 172
95% 13 107 246
90% 13 107 256
70% 13 107 279
50% 13 107 310
40% 13 107 336
30% 13 107 347
Entity #21: Chains: U - 30S ribosomal protein S21 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 61 362
95% 5 61 523
90% 5 61 547
70% 5 61 586
50% 5 61 628
40% 5 61 655
30% 5 61 662
Entity #22: Chains: V - Elongation factor G protein, length: 704 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 12 3106
95% 5 12 3757
90% 5 12 3798
70% 5 12 3805
50% 18 54 645
40% 18 54 673
30% 20 56 655
Entity #23: Chains: W - Viomycin protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 347
95% 5 63 501
90% 5 63 523
70% 5 63 561
50% 41 285 76
40% 41 285 100
30% 41 285 124
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 170
95% 13 107 243
90% 13 107 253
70% 13 107 276
50% 52 368 40
40% 52 369 54
30% 52 369 76
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 162
95% 13 108 233
90% 13 108 244
70% 13 108 266
50% 53 372 37
40% 53 372 50
30% 53 374 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 350
95% 5 63 505
90% 5 63 527
70% 5 63 568
50% 5 63 613
40% 5 63 639
30% 5 63 641
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 62 354
95% 5 62 513
90% 5 62 535
70% 5 62 575
50% 5 62 619
40% 5 62 644
30% 5 62 649
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 109 145
95% 14 109 213
90% 14 109 226
70% 14 109 250
50% 55 374 35
40% 56 376 47
30% 59 413 52
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 164
95% 13 108 237
90% 13 108 247
70% 13 108 270
50% 52 368 41
40% 52 368 56
30% 54 404 58
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.