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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KIY
Cluster # 353 Members. Sequence cutoff: 100% Cluster size: 62 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4KJ6 7 G 30S ribosomal protein S7 83333  
2 4KJ8 7 G 30S ribosomal protein S7 83333  
3 4KJA 7 G 30S ribosomal protein S7 83333  
4 4KJC 7 G 30S ribosomal protein S7 83333  
5 4KIY 7 G 30S ribosomal protein S7 83333  
6 4KJ0 7 G 30S ribosomal protein S7 83333  
7 4KJ2 7 G 30S ribosomal protein S7 83333  
8 4KJ4 7 G 30S ribosomal protein S7 83333  
9 3I1O 6 G 30S ribosomal protein S7 83333  
10 3I1M 6 G 30S ribosomal protein S7 83333  
11 3OR9 7 G 30S ribosomal protein S7 83333  
12 3ORA 7 G 30S ribosomal protein S7 83333  
13 4GAQ 7 G 30S ribosomal protein S7 83333  
14 4GAS 7 G 30S ribosomal protein S7 83333  
15 3I1Q 6 G 30S ribosomal protein S7 83333  
16 3I1S 6 G 30S ribosomal protein S7 83333  
17 3I1Z 6 G 30S ribosomal protein S7 83333  
18 3I21 6 G 30S ribosomal protein S7 83333  
19 2QAL 6 G 30S ribosomal protein S7 562  
20 2QAN 6 G 30S ribosomal protein S7 562  
21 3UOQ 7 G 30S ribosomal protein S7 562  
22 2QBD 6 G 30S ribosomal protein S7 562  
23 2QBF 5 G 30S ribosomal protein S7 562  
24 2I2P 9 G 30S ribosomal protein S7 562  
25 2I2U 9 G 30S ribosomal protein S7 562  
26 2QOY 6 G 30S ribosomal protein S7 562  
27 2QP0 14 G 30S ribosomal protein S7 562  
28 3DF1 6 G 30S ribosomal protein S7 562  
29 3DF3 6 G 30S ribosomal protein S7 562  
30 1VS5 6 G 30S RIBOSOMAL PROTEIN S7 562  
31 1VS7 6 G 30S RIBOSOMAL PROTEIN S7 562  
32 2AW7 6 G 30S ribosomal protein S7 562  
33 2AVY 6 G 30S ribosomal protein S7 562  
34 2VHO 7 G 30S RIBOSOMAL PROTEIN S7 RESIDUES 2-156 562  
35 2VHP 7 G 30S RIBOSOMAL PROTEIN S7 RESIDUES 2-156 562  
36 2QB9 6 G 30S ribosomal protein S7 562  
37 2QBB 6 G 30S ribosomal protein S7 562  
38 2QOU 6 G 30S ribosomal protein S7 562  
39 2QOW 14 G 30S ribosomal protein S7 562  
40 2QBH 6 G 30S ribosomal protein S7 562  
41 2QBJ 6 G 30S ribosomal protein S7 562  
42 2Z4K 6 G 30S ribosomal protein S7 562  
43 2Z4M 6 G 30S ribosomal protein S7 562  
44 3J5X 7 G 30S ribosomal protein S7 562  
45 3J5T 7 G 30S ribosomal protein S7 562  
46 3J5N 7 G 30S ribosomal protein S7 83333  
47 3J36 18 G 30S ribosomal protein S7 562  
48 4ADV 7 G 30S RIBOSOMAL PROTEIN S7 562  
49 3J13 9 I 30S ribosomal protein S7 562  
50 3J0X 10 J 30S ribosomal protein S7 562  
51 3J0Z 10 J 30S ribosomal protein S7 562  
52 3J10 10 J 30S ribosomal protein S7 562  
53 3J0U 10 J 30S ribosomal protein S7 562  
54 3J0V 10 J 30S ribosomal protein S7 562  
55 3J00 11 G 30S ribosomal protein S7 83333  
56 3IZV 10 K 30S ribosomal protein S7 83333  
57 3IZW 10 K 30S ribosomal protein S7 83333  
58 3KC4 7 G 30S ribosomal protein S7 83333  
59 3E1A 20 U 30S ribosomal protein S7 562  
60 3E1C 20 U 30S ribosomal protein S7 562  
61 1P87 7 G 30S RIBOSOMAL PROTEIN S7 562  
62 1P6G 6 G 30S RIBOSOMAL PROTEIN S7 562  
 
Sequence Clusters for the Sequence Entities in PDB 4KIY
Entity #1: Chains: B - 30S ribosomal protein S2 protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 106 174
95% 13 106 248
90% 13 106 259
70% 13 106 285
50% 13 106 315
40% 52 363 55
30% 52 363 77
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 108 164
95% 14 108 237
90% 14 108 247
70% 17 112 229
50% 58 369 34
40% 58 369 48
30% 58 374 67
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 163
95% 13 108 236
90% 13 108 246
70% 13 108 270
50% 52 363 42
40% 56 403 39
30% 56 403 53
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 112 138
95% 13 112 202
90% 13 112 215
70% 52 375 24
50% 52 375 33
40% 52 375 47
30% 52 375 71
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 152
95% 13 109 220
90% 13 109 233
70% 13 109 259
50% 52 365 39
40% 52 365 53
30% 54 401 57
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 103 190
95% 13 105 257
90% 13 105 267
70% 13 105 291
50% 13 105 321
40% 13 106 341
30% 13 106 351
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 82 245
95% 14 110 213
90% 14 110 225
70% 14 110 251
50% 57 376 32
40% 57 376 45
30% 57 376 69
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 82 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 166
95% 13 108 239
90% 13 108 249
70% 13 108 272
50% 13 108 305
40% 13 108 332
30% 52 363 78
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 165
95% 13 108 238
90% 13 108 248
70% 13 108 271
50% 13 111 291
40% 13 111 315
30% 13 113 324
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 351
95% 5 65 480
90% 5 65 502
70% 5 65 535
50% 5 65 580
40% 5 65 612
30% 5 65 615
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 169
95% 13 107 243
90% 13 107 253
70% 13 107 277
50% 53 366 38
40% 53 366 52
30% 53 366 75
Entity #2: Chains: A - 16S rRNA rna, length: 1542 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 170
95% 13 107 244
90% 13 107 254
70% 13 107 278
50% 13 107 310
40% 13 107 336
30% 13 107 346
Entity #21: Chains: U - 30S ribosomal protein S21 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 61 361
95% 5 61 519
90% 5 61 543
70% 5 61 580
50% 5 61 624
40% 5 61 650
30% 5 61 652
Entity #22: Chains: V - Elongation factor G protein, length: 704 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 12 3092
95% 5 12 3739
90% 5 12 3781
70% 5 12 3785
50% 18 52 672
40% 18 52 697
30% 20 54 670
Entity #23: Chains: W - Viomycin protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 346
95% 5 63 496
90% 5 63 519
70% 5 63 556
50% 41 282 81
40% 41 282 101
30% 41 282 123
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 168
95% 13 107 241
90% 13 107 251
70% 13 107 275
50% 52 363 40
40% 52 364 54
30% 52 364 76
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 160
95% 13 108 231
90% 13 108 242
70% 13 108 265
50% 53 367 37
40% 53 367 51
30% 53 369 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 349
95% 5 63 500
90% 5 63 523
70% 5 63 563
50% 5 63 609
40% 5 63 635
30% 5 63 635
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 62 353
95% 5 62 508
90% 5 62 531
70% 5 62 570
50% 5 62 615
40% 5 62 640
30% 5 62 642
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 109 144
95% 14 109 211
90% 14 109 223
70% 14 109 249
50% 55 369 36
40% 56 371 49
30% 59 408 50
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 162
95% 13 108 235
90% 13 108 245
70% 13 108 269
50% 52 363 41
40% 52 363 56
30% 54 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.