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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KIY
Cluster # 614 Members. Sequence cutoff: 50% Cluster size: 65 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4KJ6 18 R 30S ribosomal protein S18 83333  
2 4KJ8 18 R 30S ribosomal protein S18 83333  
3 4KJA 18 R 30S ribosomal protein S18 83333  
4 4KJC 18 R 30S ribosomal protein S18 83333  
5 4KIY 18 R 30S ribosomal protein S18 83333  
6 4KJ0 18 R 30S ribosomal protein S18 83333  
7 4KJ2 18 R 30S ribosomal protein S18 83333  
8 4KJ4 18 R 30S ribosomal protein S18 83333  
9 3I1O 17 R 30S ribosomal protein S18 83333  
10 3I1M 17 R 30S ribosomal protein S18 83333  
11 3OR9 18 R 30S ribosomal protein S18 83333  
12 3ORA 18 R 30S ribosomal protein S18 83333  
13 4GAQ 18 R 30S ribosomal protein S18 83333  
14 4GAS 18 R 30S ribosomal protein S18 83333  
15 3SFS 18 R 30S ribosomal protein S18 562  
16 3I1Q 17 R 30S ribosomal protein S18 83333  
17 3I1S 17 R 30S ribosomal protein S18 83333  
18 3I1Z 17 R 30S ribosomal protein S18 83333  
19 3I21 17 R 30S ribosomal protein S18 83333  
20 2QAL 17 R 30S ribosomal protein S18 562  
21 2QAN 17 R 30S ribosomal protein S18 562  
22 3UOQ 18 R 30S ribosomal protein S18 562  
23 2QBD 17 R 30S ribosomal protein S18 562  
24 2QBF 16 R 30S ribosomal protein S18 562  
25 2I2P 20 R 30S ribosomal protein S18 562  
26 2I2U 20 R 30S ribosomal protein S18 562  
27 2QOY 15 R 30S ribosomal protein S18 562  
28 2QP0 10 R 30S ribosomal protein S18 562  
29 3DF1 17 R 30S ribosomal protein S18 562  
30 3DF3 17 R 30S ribosomal protein S18 562  
31 1VS5 17 R 30S RIBOSOMAL PROTEIN S18 562  
32 1VS7 17 R 30S RIBOSOMAL PROTEIN S18 562  
33 2AW7 17 R 30S ribosomal protein S18 562  
34 2AVY 17 R 30S ribosomal protein S18 562  
35 2VHO 18 R 30S RIBOSOMAL PROTEIN S18 RESIDUES 2-75 562  
36 2VHP 18 R 30S RIBOSOMAL PROTEIN S18 RESIDUES 2-84 FRAGMENT: RESIDUES 2-75 562  
37 2QB9 17 R 30S ribosomal protein S18 562  
38 2QBB 17 R 30S ribosomal protein S18 562  
39 2QOU 15 R 30S ribosomal protein S18 562  
40 2QOW 10 R 30S ribosomal protein S18 562  
41 2QBH 17 R 30S ribosomal protein S18 562  
42 2QBJ 17 R 30S ribosomal protein S18 562  
43 2Z4K 17 R 30S ribosomal protein S18 562  
44 2Z4M 17 R 30S ribosomal protein S18 562  
45 3J5X 18 R 30S ribosomal protein S18 562  
46 3J5T 18 R 30S ribosomal protein S18 562  
47 3J5N 18 R 30S ribosomal protein S18 83333  
48 3J36 9 R 30S ribosomal protein S18 562  
49 4ADV 18 R 30S RIBOSOMAL PROTEIN S18 562  
50 3J13 20 T 30S ribosomal protein S18 562  
51 3J0X 21 U 30S ribosomal protein S18 562  
52 3J0Z 21 U 30S ribosomal protein S18 562  
53 3J10 21 U 30S ribosomal protein S18 562  
54 3J0U 21 U 30S ribosomal protein S18 562  
55 3J0V 21 U 30S ribosomal protein S18 562  
56 3J00 22 R 30S ribosomal protein S18 83333  
57 3IZV 21 V 30S ribosomal protein S18 83333  
58 3IZW 21 V 30S ribosomal protein S18 83333  
59 3KC4 18 R 30S ribosomal protein S18 83333  
60 3E1A 12 K 30S ribosomal protein S18 562  
61 3E1C 12 K 30S ribosomal protein S18 562  
62 2GY9 19 R 30S ribosomal subunit protein S18 562  
63 2GYB 19 R 30S ribosomal subunit protein S18 562  
64 1P87 18 R 30S RIBOSOMAL PROTEIN S18 562  
65 1P6G 17 R 30S RIBOSOMAL PROTEIN S18 562  
 
Sequence Clusters for the Sequence Entities in PDB 4KIY
Entity #1: Chains: B - 30S ribosomal protein S2 protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 106 182
95% 13 106 257
90% 13 106 269
70% 13 106 292
50% 13 106 325
40% 60 376 53
30% 60 376 75
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 108 172
95% 14 108 245
90% 14 108 256
70% 17 112 236
50% 66 382 34
40% 66 382 45
30% 66 387 65
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 171
95% 13 108 244
90% 13 108 255
70% 13 108 278
50% 60 376 41
40% 78 450 35
30% 78 450 45
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 112 145
95% 13 112 211
90% 13 112 224
70% 60 388 24
50% 60 388 33
40% 60 388 44
30% 60 388 68
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 161
95% 13 109 231
90% 13 109 245
70% 13 109 267
50% 60 378 38
40% 60 378 51
30% 76 448 49
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 103 193
95% 13 105 265
90% 13 105 277
70% 13 105 298
50% 13 105 331
40% 13 106 351
30% 13 106 363
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 82 248
95% 14 110 227
90% 14 110 241
70% 14 110 263
50% 65 389 32
40% 65 389 43
30% 65 389 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 82 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 175
95% 13 108 248
90% 13 108 259
70% 13 108 281
50% 13 108 316
40% 13 108 341
30% 60 376 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 174
95% 13 108 247
90% 13 108 258
70% 13 108 280
50% 13 111 301
40% 13 111 324
30% 13 113 337
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 354
95% 5 65 487
90% 5 65 510
70% 5 65 553
50% 5 65 614
40% 5 65 647
30% 5 65 649
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 177
95% 13 107 252
90% 13 107 263
70% 13 107 285
50% 61 379 37
40% 61 379 49
30% 61 379 72
Entity #2: Chains: A - 16S rRNA rna, length: 1542 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 178
95% 13 107 253
90% 13 107 264
70% 13 107 286
50% 13 107 321
40% 13 107 345
30% 13 107 358
Entity #21: Chains: U - 30S ribosomal protein S21 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 61 364
95% 5 61 525
90% 5 61 551
70% 5 61 598
50% 5 61 666
40% 5 61 696
30% 5 61 699
Entity #22: Chains: V - Elongation factor G protein, length: 704 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 12 3177
95% 5 12 3822
90% 5 12 3856
70% 5 12 3854
50% 18 54 689
40% 18 54 720
30% 20 56 690
Entity #23: Chains: W - Viomycin protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 349
95% 5 63 507
90% 5 63 530
70% 5 63 571
50% 49 293 73
40% 49 293 98
30% 49 293 119
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 176
95% 13 107 249
90% 13 107 260
70% 13 107 283
50% 60 376 39
40% 60 377 52
30% 60 377 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 168
95% 13 108 239
90% 13 108 251
70% 13 108 273
50% 61 380 36
40% 61 380 48
30% 61 382 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 352
95% 5 63 511
90% 5 63 534
70% 5 63 576
50% 5 63 649
40% 5 63 674
30% 5 63 671
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 62 356
95% 5 62 517
90% 5 62 540
70% 5 62 584
50% 5 62 656
40% 5 62 682
30% 5 62 683
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 109 158
95% 14 109 226
90% 14 109 240
70% 14 109 262
50% 63 382 35
40% 64 384 46
30% 81 455 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 170
95% 13 108 243
90% 13 108 254
70% 13 108 277
50% 60 376 40
40% 60 376 54
30% 76 446 52
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.