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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KIY
Cluster # 615 Members. Sequence cutoff: 40% Cluster size: 65 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4KJ6 18 R 30S ribosomal protein S18 83333  
2 4KJ8 18 R 30S ribosomal protein S18 83333  
3 4KJA 18 R 30S ribosomal protein S18 83333  
4 4KJC 18 R 30S ribosomal protein S18 83333  
5 4KIY 18 R 30S ribosomal protein S18 83333  
6 4KJ0 18 R 30S ribosomal protein S18 83333  
7 4KJ2 18 R 30S ribosomal protein S18 83333  
8 4KJ4 18 R 30S ribosomal protein S18 83333  
9 3I1O 17 R 30S ribosomal protein S18 83333  
10 3I1M 17 R 30S ribosomal protein S18 83333  
11 3OR9 18 R 30S ribosomal protein S18 83333  
12 3ORA 18 R 30S ribosomal protein S18 83333  
13 4GAQ 18 R 30S ribosomal protein S18 83333  
14 4GAS 18 R 30S ribosomal protein S18 83333  
15 3SFS 18 R 30S ribosomal protein S18 562  
16 3I1Q 17 R 30S ribosomal protein S18 83333  
17 3I1S 17 R 30S ribosomal protein S18 83333  
18 3I1Z 17 R 30S ribosomal protein S18 83333  
19 3I21 17 R 30S ribosomal protein S18 83333  
20 2QAL 17 R 30S ribosomal protein S18 562  
21 2QAN 17 R 30S ribosomal protein S18 562  
22 3UOQ 18 R 30S ribosomal protein S18 562  
23 2QBD 17 R 30S ribosomal protein S18 562  
24 2QBF 16 R 30S ribosomal protein S18 562  
25 2I2P 20 R 30S ribosomal protein S18 562  
26 2I2U 20 R 30S ribosomal protein S18 562  
27 2QOY 15 R 30S ribosomal protein S18 562  
28 2QP0 10 R 30S ribosomal protein S18 562  
29 3DF1 17 R 30S ribosomal protein S18 562  
30 3DF3 17 R 30S ribosomal protein S18 562  
31 1VS5 17 R 30S RIBOSOMAL PROTEIN S18 562  
32 1VS7 17 R 30S RIBOSOMAL PROTEIN S18 562  
33 2AW7 17 R 30S ribosomal protein S18 562  
34 2AVY 17 R 30S ribosomal protein S18 562  
35 2VHO 18 R 30S RIBOSOMAL PROTEIN S18 RESIDUES 2-75 562  
36 2VHP 18 R 30S RIBOSOMAL PROTEIN S18 RESIDUES 2-84 FRAGMENT: RESIDUES 2-75 562  
37 2QB9 17 R 30S ribosomal protein S18 562  
38 2QBB 17 R 30S ribosomal protein S18 562  
39 2QOU 15 R 30S ribosomal protein S18 562  
40 2QOW 10 R 30S ribosomal protein S18 562  
41 2QBH 17 R 30S ribosomal protein S18 562  
42 2QBJ 17 R 30S ribosomal protein S18 562  
43 2Z4K 17 R 30S ribosomal protein S18 562  
44 2Z4M 17 R 30S ribosomal protein S18 562  
45 3J5X 18 R 30S ribosomal protein S18 562  
46 3J5T 18 R 30S ribosomal protein S18 562  
47 3J5N 18 R 30S ribosomal protein S18 83333  
48 3J36 9 R 30S ribosomal protein S18 562  
49 4ADV 18 R 30S RIBOSOMAL PROTEIN S18 562  
50 3J13 20 T 30S ribosomal protein S18 562  
51 3J0X 21 U 30S ribosomal protein S18 562  
52 3J0Z 21 U 30S ribosomal protein S18 562  
53 3J10 21 U 30S ribosomal protein S18 562  
54 3J0U 21 U 30S ribosomal protein S18 562  
55 3J0V 21 U 30S ribosomal protein S18 562  
56 3J00 22 R 30S ribosomal protein S18 83333  
57 3IZV 21 V 30S ribosomal protein S18 83333  
58 3IZW 21 V 30S ribosomal protein S18 83333  
59 3KC4 18 R 30S ribosomal protein S18 83333  
60 3E1A 12 K 30S ribosomal protein S18 562  
61 3E1C 12 K 30S ribosomal protein S18 562  
62 2GY9 19 R 30S ribosomal subunit protein S18 562  
63 2GYB 19 R 30S ribosomal subunit protein S18 562  
64 1P87 18 R 30S RIBOSOMAL PROTEIN S18 562  
65 1P6G 17 R 30S RIBOSOMAL PROTEIN S18 562  
 
Sequence Clusters for the Sequence Entities in PDB 4KIY
Entity #1: Chains: B - 30S ribosomal protein S2 protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 106 175
95% 13 106 249
90% 13 106 260
70% 13 106 286
50% 13 106 315
40% 52 363 55
30% 52 363 77
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 108 165
95% 14 108 238
90% 14 108 248
70% 17 112 230
50% 58 369 34
40% 58 369 48
30% 58 374 67
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 164
95% 13 108 237
90% 13 108 247
70% 13 108 271
50% 52 363 42
40% 56 403 39
30% 56 403 53
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 112 139
95% 13 112 204
90% 13 112 216
70% 52 375 24
50% 52 375 33
40% 52 375 47
30% 52 375 71
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 153
95% 13 109 222
90% 13 109 235
70% 13 109 260
50% 52 365 39
40% 52 365 53
30% 54 401 57
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 103 190
95% 13 105 258
90% 13 105 269
70% 13 105 292
50% 13 105 321
40% 13 106 341
30% 13 106 351
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 82 245
95% 14 110 215
90% 14 110 228
70% 14 110 252
50% 57 376 32
40% 57 376 45
30% 57 376 69
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 82 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 167
95% 13 108 240
90% 13 108 250
70% 13 108 273
50% 13 108 305
40% 13 108 332
30% 52 363 78
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 166
95% 13 108 239
90% 13 108 249
70% 13 108 272
50% 13 111 291
40% 13 111 315
30% 13 113 324
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 351
95% 5 65 482
90% 5 65 504
70% 5 65 538
50% 5 65 584
40% 5 65 615
30% 5 65 618
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 170
95% 13 107 244
90% 13 107 254
70% 13 107 278
50% 53 366 38
40% 53 366 52
30% 53 366 75
Entity #2: Chains: A - 16S rRNA rna, length: 1542 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 171
95% 13 107 245
90% 13 107 255
70% 13 107 279
50% 13 107 310
40% 13 107 336
30% 13 107 346
Entity #21: Chains: U - 30S ribosomal protein S21 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 61 361
95% 5 61 521
90% 5 61 545
70% 5 61 583
50% 5 61 627
40% 5 61 653
30% 5 61 654
Entity #22: Chains: V - Elongation factor G protein, length: 704 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 12 3095
95% 5 12 3745
90% 5 12 3787
70% 5 12 3792
50% 18 52 674
40% 18 52 698
30% 20 54 671
Entity #23: Chains: W - Viomycin protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 346
95% 5 63 498
90% 5 63 521
70% 5 63 558
50% 41 282 81
40% 41 282 101
30% 41 282 123
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 169
95% 13 107 242
90% 13 107 252
70% 13 107 276
50% 52 363 40
40% 52 364 54
30% 52 364 76
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 161
95% 13 108 232
90% 13 108 243
70% 13 108 266
50% 53 367 37
40% 53 367 51
30% 53 369 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 349
95% 5 63 502
90% 5 63 525
70% 5 63 565
50% 5 63 612
40% 5 63 637
30% 5 63 637
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 62 353
95% 5 62 510
90% 5 62 533
70% 5 62 572
50% 5 62 618
40% 5 62 642
30% 5 62 644
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 109 145
95% 14 109 213
90% 14 109 226
70% 14 109 250
50% 55 369 36
40% 56 371 49
30% 59 408 50
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 163
95% 13 108 236
90% 13 108 246
70% 13 108 270
50% 52 363 41
40% 52 363 56
30% 54 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.