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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KIY
Cluster # 223 Members. Sequence cutoff: 95% Cluster size: 109 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4TPC 13 M 30S ribosomal protein S13 83333  
2 4TPE 13 M 30S ribosomal protein S13 83333  
3 4TP8 13 M 30S ribosomal protein S13 83333  
4 4TPA 13 M 30S ribosomal protein S13 83333  
5 4GD1 13 M 30S ribosomal protein S13 83333  
6 4GD2 13 M 30S ribosomal protein S13 83333  
7 4KJ6 13 M 30S ribosomal protein S13 83333  
8 4KJ8 13 M 30S ribosomal protein S13 83333  
9 4KJA 13 M 30S ribosomal protein S13 83333  
10 4KJC 13 M 30S ribosomal protein S13 83333  
11 4TP0 13 M 30S ribosomal protein S13 83333  
12 4TP2 13 M 30S ribosomal protein S13 83333  
13 4KIY 13 M 30S ribosomal protein S13 83333  
14 4KJ0 13 M 30S ribosomal protein S13 83333  
15 4KJ2 13 M 30S ribosomal protein S13 83333  
16 4KJ4 13 M 30S ribosomal protein S13 83333  
17 4TP4 13 M 30S ribosomal protein S13 83333  
18 4TP6 13 M 30S ribosomal protein S13 83333  
19 3OFA 13 M 30S ribosomal protein S13 83333  
20 3OFB 13 M 30S ribosomal protein S13 83333  
21 3OFO 13 M 30S ribosomal protein S13 83333  
22 3OFP 13 M 30S ribosomal protein S13 83333  
23 3I1O 12 M 30S ribosomal protein S13 83333  
24 3I1M 12 M 30S ribosomal protein S13 83333  
25 3OR9 13 M 30S ribosomal protein S13 83333  
26 3ORA 13 M 30S ribosomal protein S13 83333  
27 3OFX 13 M 30S ribosomal protein S13 83333  
28 3OFY 13 M 30S ribosomal protein S13 83333  
29 3OAQ 13 M 30S ribosomal protein S13 83333  
30 3OAR 13 M 30S ribosomal protein S13 83333  
31 4TOU 13 M 30S ribosomal protein S13 83333  
32 4TOW 13 M 30S ribosomal protein S13 83333  
33 4TOL 13 M 30S ribosomal protein S13 83333  
34 4TON 13 M 30S ribosomal protein S13 83333  
35 4GAQ 13 M 30S ribosomal protein S13 83333  
36 4GAS 13 M 30S ribosomal protein S13 83333  
37 3SFS 13 M 30S ribosomal protein S13 562  
38 4PE9 13 M 30S ribosomal protein S13 83333  
39 4PEA 13 M 30S ribosomal protein S13 83333  
40 3I1Q 12 M 30S ribosomal protein S13 83333  
41 3I1S 12 M 30S ribosomal protein S13 83333  
42 3I1Z 12 M 30S ribosomal protein S13 83333  
43 3I21 12 M 30S ribosomal protein S13 83333  
44 2QAL 12 M 30S ribosomal protein S13 562  
45 2QAN 12 M 30S ribosomal protein S13 562  
46 3UOQ 13 M 30S ribosomal protein S13 562  
47 2QBD 12 M 30S ribosomal protein S13 562  
48 2QBF 11 M 30S ribosomal protein S13 562  
49 2I2P 15 M 30S ribosomal protein S13 562  
50 2I2U 15 M 30S ribosomal protein S13 562  
51 2QOY 12 M 30S ribosomal protein S13 562  
52 2QP0 17 M 30S ribosomal protein S13 562  
53 3DF1 12 M 30S ribosomal protein S13 562  
54 3DF3 12 M 30S ribosomal protein S13 562  
55 1VS5 12 M 30S RIBOSOMAL PROTEIN S13 562  
56 1VS7 12 M 30S RIBOSOMAL PROTEIN S13 562  
57 2AW7 12 M 30S ribosomal protein S13 562  
58 2AVY 12 M 30S ribosomal protein S13 562  
59 2VHO 13 M 30S RIBOSOMAL PROTEIN S13 RESIDUES 2-118 562  
60 2VHP 13 M 30S RIBOSOMAL PROTEIN S13 RESIDUES 2-118 562  
61 2QB9 12 M 30S ribosomal protein S13 562  
62 2QBB 12 M 30S ribosomal protein S13 562  
63 2QOU 12 M 30S ribosomal protein S13 562  
64 2QOW 17 M 30S ribosomal protein S13 562  
65 2QBH 12 M 30S ribosomal protein S13 562  
66 2QBJ 12 M 30S ribosomal protein S13 562  
67 2Z4K 12 M 30S ribosomal protein S13 562  
68 2Z4M 12 M 30S ribosomal protein S13 562  
69 3J5X 13 M 30S ribosomal protein S13 562  
70 3J5T 13 M 30S ribosomal protein S13 562  
71 3J5N 13 M 30S ribosomal protein S13 83333  
72 3J4V 12 M 30S ribosomal protein S13 83333  
73 3J4W 12 M 30S ribosomal protein S13 83333  
74 3J4Y 12 M 30S ribosomal protein S13 83333  
75 3J4Z 12 M 30S ribosomal protein S13 83333  
76 3J53 12 M 30S ribosomal protein S13 83333  
77 3J55 12 M 30S ribosomal protein S13 83333  
78 3J57 12 M 30S ribosomal protein S13 83333  
79 3J59 12 M 30S ribosomal protein S13 83333  
80 3J5B 12 M 30S ribosomal protein S13 83333  
81 3J5D 12 M 30S ribosomal protein S13 83333  
82 3J5F 12 M 30S ribosomal protein S13 83333  
83 3J5H 12 M 30S ribosomal protein S13 83333  
84 3J5J 12 M 30S ribosomal protein S13 83333  
85 3J36 4 M 30S ribosomal protein S13 562  
86 3J18 13 M 30S ribosomal protein S13 562  
87 4ADV 13 M 30S RIBOSOMAL PROTEIN S13 562  
88 3J13 15 O 30S ribosomal protein S13 562  
89 3J0X 16 P 30S ribosomal protein S13 562  
90 3J0Z 16 P 30S ribosomal protein S13 562  
91 3J10 16 P 30S ribosomal protein S13 562  
92 3J0U 16 P 30S ribosomal protein S13 562  
93 3J0V 16 P 30S ribosomal protein S13 562  
94 4A2I 13 M 30S RIBOSOMAL PROTEIN S13 562  
95 2YKR 13 M 30S RIBOSOMAL PROTEIN S13 RESIDUES 2-115 668369  
96 3J00 17 M 30S ribosomal protein S13 83333  
97 3IZV 16 Q 30S ribosomal protein S13 83333  
98 3IZW 16 Q 30S ribosomal protein S13 83333  
99 3IYX 1 M 30S ribosomal protein S13 701177  
100 3IYY 3 M 30S ribosomal protein S13 701177  
101 2WWL 13 M 30S RIBOSOMAL PROTEIN S13 RESIDUES 2-114 562  
102 3KC4 13 M 30S ribosomal protein S13 83333  
103 3FIH 4 M 30S ribosomal protein S13 562  
104 3E1A 7 F 30S ribosomal protein S13 562  
105 3E1C 7 F 30S ribosomal protein S13 562  
106 2GY9 14 M 30S ribosomal subunit protein S13 562  
107 2GYB 14 M 30S ribosomal subunit protein S13 562  
108 1P87 13 M 30S RIBOSOMAL PROTEIN S13 562  
109 1P6G 12 M 30S RIBOSOMAL PROTEIN S13 562  
 
Sequence Clusters for the Sequence Entities in PDB 4KIY
Entity #1: Chains: B - 30S ribosomal protein S2 protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 106 176
95% 13 106 250
90% 13 106 261
70% 13 106 286
50% 13 106 315
40% 52 368 55
30% 52 368 77
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 108 166
95% 14 108 239
90% 14 108 249
70% 17 112 233
50% 58 374 34
40% 58 374 46
30% 58 379 66
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 165
95% 13 108 238
90% 13 108 248
70% 13 108 271
50% 52 368 42
40% 56 408 40
30% 56 408 53
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 112 139
95% 13 112 204
90% 13 112 216
70% 52 380 24
50% 52 380 33
40% 52 380 45
30% 52 380 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 154
95% 13 109 223
90% 13 109 236
70% 13 109 260
50% 52 370 39
40% 52 370 53
30% 54 406 57
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 103 190
95% 13 105 260
90% 13 105 271
70% 13 105 293
50% 13 105 322
40% 13 106 341
30% 13 106 352
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 82 245
95% 14 110 215
90% 14 110 228
70% 14 110 252
50% 57 381 32
40% 57 381 43
30% 57 381 68
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 82 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 168
95% 13 108 241
90% 13 108 251
70% 13 108 273
50% 13 108 305
40% 13 108 332
30% 52 368 78
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 167
95% 13 108 240
90% 13 108 250
70% 13 108 272
50% 13 111 291
40% 13 111 316
30% 13 113 324
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 352
95% 5 65 485
90% 5 65 506
70% 5 65 541
50% 5 65 585
40% 5 65 616
30% 5 65 623
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 171
95% 13 107 245
90% 13 107 255
70% 13 107 278
50% 53 371 38
40% 53 371 51
30% 53 371 75
Entity #2: Chains: A - 16S rRNA rna, length: 1542 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 172
95% 13 107 246
90% 13 107 256
70% 13 107 279
50% 13 107 310
40% 13 107 336
30% 13 107 347
Entity #21: Chains: U - 30S ribosomal protein S21 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 61 362
95% 5 61 523
90% 5 61 547
70% 5 61 586
50% 5 61 628
40% 5 61 655
30% 5 61 662
Entity #22: Chains: V - Elongation factor G protein, length: 704 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 12 3106
95% 5 12 3757
90% 5 12 3798
70% 5 12 3805
50% 18 54 645
40% 18 54 673
30% 20 56 655
Entity #23: Chains: W - Viomycin protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 347
95% 5 63 501
90% 5 63 523
70% 5 63 561
50% 41 285 76
40% 41 285 100
30% 41 285 124
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 170
95% 13 107 243
90% 13 107 253
70% 13 107 276
50% 52 368 40
40% 52 369 54
30% 52 369 76
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 162
95% 13 108 233
90% 13 108 244
70% 13 108 266
50% 53 372 37
40% 53 372 50
30% 53 374 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 350
95% 5 63 505
90% 5 63 527
70% 5 63 568
50% 5 63 613
40% 5 63 639
30% 5 63 641
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 62 354
95% 5 62 513
90% 5 62 535
70% 5 62 575
50% 5 62 619
40% 5 62 644
30% 5 62 649
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 109 145
95% 14 109 213
90% 14 109 226
70% 14 109 250
50% 55 374 35
40% 56 376 47
30% 59 413 52
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 164
95% 13 108 237
90% 13 108 247
70% 13 108 270
50% 52 368 41
40% 52 368 56
30% 54 404 58
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.