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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KIY
Cluster # 248 Members. Sequence cutoff: 90% Cluster size: 110 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4TPC 11 K 30S ribosomal protein S11 83333  
2 4TPE 11 K 30S ribosomal protein S11 83333  
3 4TP8 11 K 30S ribosomal protein S11 83333  
4 4TPA 11 K 30S ribosomal protein S11 83333  
5 4GD1 11 K 30S ribosomal protein S11 83333  
6 4GD2 11 K 30S ribosomal protein S11 83333  
7 4KJ6 11 K 30S ribosomal protein S11 83333  
8 4KJ8 11 K 30S ribosomal protein S11 83333  
9 4KJA 11 K 30S ribosomal protein S11 83333  
10 4KJC 11 K 30S ribosomal protein S11 83333  
11 4TP0 11 K 30S ribosomal protein S11 83333  
12 4TP2 11 K 30S ribosomal protein S11 83333  
13 4KIY 11 K 30S ribosomal protein S11 83333  
14 4KJ0 11 K 30S ribosomal protein S11 83333  
15 4KJ2 11 K 30S ribosomal protein S11 83333  
16 4KJ4 11 K 30S ribosomal protein S11 83333  
17 4WAO 11 K 30S ribosomal protein S11 83333  
18 4WAQ 11 K 30S ribosomal protein S11 83333  
19 4TP4 11 K 30S ribosomal protein S11 83333  
20 4TP6 11 K 30S ribosomal protein S11 83333  
21 3OFA 11 K 30S ribosomal protein S11 83333  
22 3OFB 11 K 30S ribosomal protein S11 83333  
23 3OFO 11 K 30S ribosomal protein S11 83333  
24 3OFP 11 K 30S ribosomal protein S11 83333  
25 3I1O 10 K 30S ribosomal protein S11 83333  
26 3I1M 10 K 30S ribosomal protein S11 83333  
27 3OR9 11 K 30S ribosomal protein S11 83333  
28 3ORA 11 K 30S ribosomal protein S11 83333  
29 3OFX 11 K 30S ribosomal protein S11 83333  
30 3OFY 11 K 30S ribosomal protein S11 83333  
31 3OAQ 11 K 30S ribosomal protein S11 83333  
32 3OAR 11 K 30S ribosomal protein S11 83333  
33 4TOU 11 K 30S ribosomal protein S11 83333  
34 4TOW 11 K 30S ribosomal protein S11 83333  
35 4TOL 11 K 30S ribosomal protein S11 83333  
36 4TON 11 K 30S ribosomal protein S11 83333  
37 4GAQ 11 K 30S ribosomal protein S11 83333  
38 4GAS 11 K 30S ribosomal protein S11 83333  
39 3SFS 11 K 30S ribosomal protein S11 562  
40 4PE9 11 K 30S ribosomal protein S11 83333  
41 4PEA 11 K 30S ribosomal protein S11 83333  
42 3I1Q 10 K 30S ribosomal protein S11 83333  
43 3I1S 10 K 30S ribosomal protein S11 83333  
44 3I1Z 10 K 30S ribosomal protein S11 83333  
45 3I21 10 K 30S ribosomal protein S11 83333  
46 2QAL 10 K 30S ribosomal protein S11 562  
47 2QAN 10 K 30S ribosomal protein S11 562  
48 3UOQ 11 K 30S ribosomal protein S11 562  
49 2QBD 10 K 30S ribosomal protein S11 562  
50 2QBF 9 K 30S ribosomal protein S11 562  
51 2I2P 13 K 30S ribosomal protein S11 562  
52 2I2U 13 K 30S ribosomal protein S11 562  
53 2QOY 10 K 30S ribosomal protein S11 562  
54 2QP0 6 K 30S ribosomal protein S11 562  
55 3DF1 10 K 30S ribosomal protein S11 562  
56 3DF3 10 K 30S ribosomal protein S11 562  
57 1VS5 10 K 30S RIBOSOMAL PROTEIN S11 562  
58 1VS7 10 K 30S RIBOSOMAL PROTEIN S11 562  
59 2AW7 10 K 30S ribosomal protein S11 562  
60 2AVY 10 K 30S ribosomal protein S11 562  
61 2VHO 11 K 30S RIBOSOMAL PROTEIN S11 RESIDUES 2-129 562  
62 2VHP 11 K 30S RIBOSOMAL PROTEIN S11 RESIDUES 2-129 562  
63 2QB9 10 K 30S ribosomal protein S11 562  
64 2QBB 10 K 30S ribosomal protein S11 562  
65 2QOU 10 K 30S ribosomal protein S11 562  
66 2QOW 6 K 30S ribosomal protein S11 562  
67 2QBH 10 K 30S ribosomal protein S11 562  
68 2QBJ 10 K 30S ribosomal protein S11 562  
69 2Z4K 10 K 30S ribosomal protein S11 562  
70 2Z4M 10 K 30S ribosomal protein S11 562  
71 3J5X 11 K 30S ribosomal protein S11 562  
72 3J5T 11 K 30S ribosomal protein S11 562  
73 3J5N 11 K 30S ribosomal protein S11 83333  
74 3J4V 10 K 30S ribosomal protein S11 83333  
75 3J4W 10 K 30S ribosomal protein S11 83333  
76 3J4Y 10 K 30S ribosomal protein S11 83333  
77 3J4Z 10 K 30S ribosomal protein S11 83333  
78 3J53 10 K 30S ribosomal protein S11 83333  
79 3J55 10 K 30S ribosomal protein S11 83333  
80 3J57 10 K 30S ribosomal protein S11 83333  
81 3J59 10 K 30S ribosomal protein S11 83333  
82 3J5B 10 K 30S ribosomal protein S11 83333  
83 3J5D 10 K 30S ribosomal protein S11 83333  
84 3J5F 10 K 30S ribosomal protein S11 83333  
85 3J5H 10 K 30S ribosomal protein S11 83333  
86 3J5J 10 K 30S ribosomal protein S11 83333  
87 3J36 2 K 30S ribosomal protein S11 562  
88 3J18 11 K 30S ribosomal protein S11 562  
89 4ADV 11 K 30S RIBOSOMAL PROTEIN S11 562  
90 3J13 13 M 30S ribosomal protein S11 562  
91 3J0X 14 N 30S ribosomal protein S11 562  
92 3J0Z 14 N 30S ribosomal protein S11 562  
93 3J10 14 N 30S ribosomal protein S11 562  
94 3J0U 14 N 30S ribosomal protein S11 562  
95 3J0V 14 N 30S ribosomal protein S11 562  
96 4A2I 11 K 30S RIBOSOMAL PROTEIN S11 562  
97 2YKR 11 K 30S RIBOSOMAL PROTEIN S11 RESIDUES 13-129 668369  
98 3J00 15 K 30S ribosomal protein S11 83333  
99 3IZV 14 O 30S ribosomal protein S11 83333  
100 3IZW 14 O 30S ribosomal protein S11 83333  
101 2WWL 11 K 30S RIBOSOMAL PROTEIN S11 RESIDUES 13-129 562  
102 3KC4 11 K 30S ribosomal protein S11 83333  
103 3IY8 6 K 30S ribosomal protein S11 83333  
104 3FIH 2 K 30S ribosomal protein S11 562  
105 3E1A 5 C 30S ribosomal protein S11 562  
106 3E1C 5 C 30S ribosomal protein S11 562  
107 2GY9 12 K 30S ribosomal subunit protein S11 562  
108 2GYB 12 K 30S ribosomal subunit protein S11 562  
109 1P87 11 K 30S RIBOSOMAL PROTEIN S11 562  
110 1P6G 10 K 30S RIBOSOMAL PROTEIN S11 562  
 
Sequence Clusters for the Sequence Entities in PDB 4KIY
Entity #1: Chains: B - 30S ribosomal protein S2 protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 179
95% 13 108 250
90% 13 108 262
70% 13 108 282
50% 13 108 314
40% 60 378 53
30% 60 378 75
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 110 166
95% 14 110 235
90% 14 110 249
70% 17 114 233
50% 66 384 34
40% 66 384 46
30% 66 389 65
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 165
95% 13 110 234
90% 13 110 248
70% 13 110 270
50% 60 378 41
40% 78 454 34
30% 78 454 44
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 114 143
95% 13 114 209
90% 13 114 222
70% 60 390 24
50% 60 390 33
40% 60 390 45
30% 60 390 68
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 111 159
95% 13 111 226
90% 13 111 241
70% 13 111 263
50% 60 380 38
40% 60 380 51
30% 76 452 47
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 105 188
95% 13 107 257
90% 13 107 268
70% 13 107 288
50% 13 107 324
40% 13 108 346
30% 13 108 356
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 84 246
95% 14 112 224
90% 14 112 237
70% 14 112 261
50% 65 391 32
40% 65 391 43
30% 65 391 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 82 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 169
95% 13 110 238
90% 13 110 252
70% 13 110 273
50% 13 110 308
40% 13 110 330
30% 60 378 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 168
95% 13 110 237
90% 13 110 251
70% 13 110 272
50% 13 113 297
40% 13 113 320
30% 13 115 333
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 354
95% 5 65 490
90% 5 65 513
70% 5 65 553
50% 5 65 616
40% 5 65 652
30% 5 65 656
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 172
95% 13 109 242
90% 13 109 256
70% 13 109 277
50% 61 381 37
40% 61 381 49
30% 61 381 72
Entity #2: Chains: A - 16S rRNA rna, length: 1542 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 173
95% 13 109 243
90% 13 109 257
70% 13 109 278
50% 13 109 311
40% 13 109 335
30% 13 109 348
Entity #21: Chains: U - 30S ribosomal protein S21 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 61 364
95% 5 61 528
90% 5 61 555
70% 5 61 604
50% 5 61 673
40% 5 61 702
30% 5 61 705
Entity #22: Chains: V - Elongation factor G protein, length: 704 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 12 3195
95% 5 12 3840
90% 5 12 3873
70% 5 12 3871
50% 18 54 693
40% 18 54 724
30% 20 56 696
Entity #23: Chains: W - Viomycin protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 349
95% 5 63 508
90% 5 63 532
70% 5 63 571
50% 49 293 73
40% 49 293 99
30% 49 293 119
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 170
95% 13 109 240
90% 13 109 254
70% 13 109 275
50% 60 378 39
40% 60 379 52
30% 60 379 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 162
95% 13 110 232
90% 13 110 246
70% 13 110 268
50% 61 382 36
40% 61 382 48
30% 61 384 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 352
95% 5 63 512
90% 5 63 536
70% 5 63 576
50% 5 63 654
40% 5 63 679
30% 5 63 678
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 62 356
95% 5 62 519
90% 5 62 543
70% 5 62 586
50% 5 62 663
40% 5 62 688
30% 5 62 689
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 111 157
95% 14 111 223
90% 14 111 236
70% 14 111 260
50% 63 384 35
40% 64 386 47
30% 81 459 43
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 164
95% 13 110 233
90% 13 110 247
70% 13 110 269
50% 60 378 40
40% 60 378 54
30% 76 450 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.