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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KIY
Cluster # 179 Members. Sequence cutoff: 100% Cluster size: 106 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4TPC 2 B 30S ribosomal protein S2 83333  
2 4TPE 2 B 30S ribosomal protein S2 83333  
3 4TP8 2 B 30S ribosomal protein S2 83333  
4 4TPA 2 B 30S ribosomal protein S2 83333  
5 4GD1 2 B 30S ribosomal protein S2 83333  
6 4GD2 2 B 30S ribosomal protein S2 83333  
7 4KJ6 2 B 30S ribosomal protein S2 83333  
8 4KJ8 2 B 30S ribosomal protein S2 83333  
9 4KJA 2 B 30S ribosomal protein S2 83333  
10 4KJC 2 B 30S ribosomal protein S2 83333  
11 4TP0 2 B 30S ribosomal protein S2 83333  
12 4TP2 2 B 30S ribosomal protein S2 83333  
13 4KIY 1 B 30S ribosomal protein S2 83333  
14 4KJ0 2 B 30S ribosomal protein S2 83333  
15 4KJ2 2 B 30S ribosomal protein S2 83333  
16 4KJ4 2 B 30S ribosomal protein S2 83333  
17 4TP4 2 B 30S ribosomal protein S2 83333  
18 4TP6 2 B 30S ribosomal protein S2 83333  
19 3OFA 2 B 30S ribosomal protein S2 83333  
20 3OFB 2 B 30S ribosomal protein S2 83333  
21 3OFO 2 B 30S ribosomal protein S2 83333  
22 3OFP 2 B 30S ribosomal protein S2 83333  
23 3I1O 1 B 30S ribosomal protein S2 83333  
24 3I1M 1 B 30S ribosomal protein S2 83333  
25 3OR9 2 B 30S ribosomal protein S2 83333  
26 3ORA 2 B 30S ribosomal protein S2 83333  
27 3OFX 2 B 30S ribosomal protein S2 83333  
28 3OFY 2 B 30S ribosomal protein S2 83333  
29 3OAQ 2 B 30S ribosomal protein S2 83333  
30 3OAR 2 B 30S ribosomal protein S2 83333  
31 4TOU 2 B 30S ribosomal protein S2 83333  
32 4TOW 2 B 30S ribosomal protein S2 83333  
33 4TOL 2 B 30S ribosomal protein S2 83333  
34 4TON 2 B 30S ribosomal protein S2 83333  
35 4GAQ 2 B 30S ribosomal protein S2 83333  
36 4GAS 2 B 30S ribosomal protein S2 83333  
37 3SFS 2 B 30S ribosomal protein S2 562  
38 4PE9 2 B 30S ribosomal protein S2 83333  
39 4PEA 2 B 30S ribosomal protein S2 1404261  
40 3I1Q 1 B 30S ribosomal protein S2 83333  
41 3I1S 1 B 30S ribosomal protein S2 83333  
42 3I1Z 1 B 30S ribosomal protein S2 83333  
43 3I21 1 B 30S ribosomal protein S2 83333  
44 2QAL 20 B 30S ribosomal protein S2 562  
45 2QAN 20 B 30S ribosomal protein S2 562  
46 3UOQ 2 B 30S ribosomal protein S2 562  
47 2QBD 20 B 30S ribosomal protein S2 562  
48 2QBF 19 B 30S ribosomal protein S2 562  
49 2I2P 4 B 30S ribosomal protein S2 562  
50 2I2U 4 B 30S ribosomal protein S2 562  
51 2QOY 18 B 30S ribosomal protein S2 562  
52 2QP0 20 B 30S ribosomal protein S2 562  
53 3DF1 20 B 30S ribosomal protein S2 562  
54 3DF3 20 B 30S ribosomal protein S2 562  
55 1VS5 20 B 30S RIBOSOMAL PROTEIN S2 562  
56 1VS7 20 B 30S RIBOSOMAL PROTEIN S2 562  
57 2AW7 20 B 30S ribosomal protein S2 562  
58 2AVY 20 B 30S ribosomal protein S2 562  
59 2VHO 2 B 30S RIBOSOMAL PROTEIN S2 RESIDUES 2-241 562  
60 2VHP 2 B 30S RIBOSOMAL PROTEIN S2 RESIDUES 2-241 562  
61 2QB9 20 B 30S ribosomal protein S2 562  
62 2QBB 20 B 30S ribosomal protein S2 562  
63 2QOU 18 B 30S ribosomal protein S2 562  
64 2QOW 20 B 30S ribosomal protein S2 562  
65 2QBH 20 B 30S ribosomal protein S2 562  
66 2QBJ 20 B 30S ribosomal protein S2 562  
67 2Z4K 20 B 30S ribosomal protein S2 562  
68 2Z4M 20 B 30S ribosomal protein S2 562  
69 3J5X 2 B 30S ribosomal protein S2 562  
70 3J5T 2 B 30S ribosomal protein S2 562  
71 3J5N 2 B 30S ribosomal protein S2 83333  
72 3J4V 1 B 30S ribosomal protein S2 83333  
73 3J4W 1 B 30S ribosomal protein S2 83333  
74 3J4Y 1 B 30S ribosomal protein S2 83333  
75 3J4Z 1 B 30S ribosomal protein S2 83333  
76 3J53 1 B 30S ribosomal protein S2 83333  
77 3J55 1 B 30S ribosomal protein S2 83333  
78 3J57 1 B 30S ribosomal protein S2 83333  
79 3J59 1 B 30S ribosomal protein S2 83333  
80 3J5B 1 B 30S ribosomal protein S2 83333  
81 3J5D 1 B 30S ribosomal protein S2 83333  
82 3J5F 1 B 30S ribosomal protein S2 83333  
83 3J5H 1 B 30S ribosomal protein S2 83333  
84 3J5J 1 B 30S ribosomal protein S2 83333  
85 3J36 11 B 30S ribosomal protein S2 562  
86 3J18 2 B 30S ribosomal protein S2 562  
87 4ADV 2 B 30S RIBOSOMAL PROTEIN S2 562  
88 3J13 4 D 30S ribosomal protein S2 562  
89 3J0X 5 E 30S ribosomal protein S2 562  
90 3J0Z 5 E 30S ribosomal protein S2 562  
91 3J10 5 E 30S ribosomal protein S2 562  
92 3J0U 5 E 30S ribosomal protein S2 562  
93 3J0V 5 E 30S ribosomal protein S2 562  
94 4A2I 2 B 30S RIBOSOMAL PROTEIN S2 562  
95 2YKR 2 B 30S RIBOSOMAL PROTEIN S2 RESIDUES 9-226 668369  
96 3J00 6 B 30S ribosomal protein S2 83333  
97 3IZV 5 F 30S ribosomal protein S2 83333  
98 3IZW 5 F 30S ribosomal protein S2 83333  
99 2WWL 2 B 30S RIBOSOMAL PROTEIN S2 RESIDUES 9-226 562  
100 3KC4 2 B 30S ribosomal protein S2 83333  
101 3FIH 13 B 30S ribosomal protein S2 562  
102 3E1A 4 B 30S ribosomal protein S2 562  
103 3E1C 4 B 30S ribosomal protein S2 562  
104 2GY9 3 B 30S ribosomal subunit protein S2 562  
105 2GYB 3 B 30S ribosomal subunit protein S2 562  
106 1P87 2 B 30S RIBOSOMAL PROTEIN S2 562  
 
Sequence Clusters for the Sequence Entities in PDB 4KIY
Entity #1: Chains: B - 30S ribosomal protein S2 protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 106 179
95% 13 106 253
90% 13 106 265
70% 13 106 290
50% 13 106 323
40% 60 376 53
30% 60 376 75
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 108 169
95% 14 108 242
90% 14 108 253
70% 17 112 235
50% 66 382 34
40% 66 382 45
30% 66 387 65
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 168
95% 13 108 241
90% 13 108 252
70% 13 108 275
50% 60 376 41
40% 74 436 38
30% 74 436 51
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 112 141
95% 13 112 207
90% 13 112 220
70% 60 388 24
50% 60 388 33
40% 60 388 44
30% 60 388 68
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 160
95% 13 109 230
90% 13 109 244
70% 13 109 266
50% 60 378 38
40% 60 378 51
30% 72 434 54
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 103 192
95% 13 105 264
90% 13 105 276
70% 13 105 297
50% 13 105 330
40% 13 106 349
30% 13 106 361
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 82 246
95% 14 110 226
90% 14 110 240
70% 14 110 263
50% 65 389 32
40% 65 389 43
30% 65 389 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 82 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 171
95% 13 108 244
90% 13 108 255
70% 13 108 277
50% 13 108 313
40% 13 108 340
30% 60 376 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 170
95% 13 108 243
90% 13 108 254
70% 13 108 276
50% 13 111 299
40% 13 111 324
30% 13 113 335
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 354
95% 5 65 487
90% 5 65 510
70% 5 65 548
50% 5 65 588
40% 5 65 620
30% 5 65 626
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 176
95% 13 107 250
90% 13 107 261
70% 13 107 284
50% 61 379 37
40% 61 379 49
30% 61 379 72
Entity #2: Chains: A - 16S rRNA rna, length: 1542 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 177
95% 13 107 251
90% 13 107 262
70% 13 107 285
50% 13 107 320
40% 13 107 344
30% 13 107 357
Entity #21: Chains: U - 30S ribosomal protein S21 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 61 364
95% 5 61 525
90% 5 61 550
70% 5 61 589
50% 5 61 633
40% 5 61 665
30% 5 61 668
Entity #22: Chains: V - Elongation factor G protein, length: 704 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 12 3166
95% 5 12 3815
90% 5 12 3848
70% 5 12 3848
50% 18 54 657
40% 18 54 688
30% 20 56 660
Entity #23: Chains: W - Viomycin protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 349
95% 5 63 507
90% 5 63 530
70% 5 63 566
50% 49 293 73
40% 49 293 98
30% 49 293 119
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 174
95% 13 107 247
90% 13 107 258
70% 13 107 281
50% 60 376 39
40% 60 377 52
30% 60 377 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 165
95% 13 108 236
90% 13 108 248
70% 13 108 270
50% 61 380 36
40% 61 380 48
30% 61 382 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 63 352
95% 5 63 511
90% 5 63 534
70% 5 63 571
50% 5 63 616
40% 5 63 645
30% 5 63 645
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 62 356
95% 5 62 517
90% 5 62 540
70% 5 62 578
50% 5 62 623
40% 5 62 651
30% 5 62 654
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 109 153
95% 14 109 221
90% 14 109 235
70% 14 109 258
50% 63 382 35
40% 64 384 46
30% 77 441 47
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 167
95% 13 108 240
90% 13 108 251
70% 13 108 274
50% 60 376 40
40% 60 376 54
30% 72 432 56
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.