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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KIX
Sequence Clusters for the Sequence Entities in PDB 4KIX
Entity #1: Chains: B - 5S rRNA rna, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 50S ribosomal protein L13 protein, length: 142 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 115 142
95% 13 115 205
90% 13 115 217
70% 13 115 245
50% 35 283 85
40% 35 283 106
30% 35 284 129
Entity #11: Chains: K - 50S ribosomal protein L14 protein, length: 123 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 116 139
95% 13 116 202
90% 13 116 214
70% 13 116 242
50% 36 314 57
40% 36 315 76
30% 108 454 46
Entity #12: Chains: L - 50S ribosomal protein L15 protein, length: 144 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 115 141
95% 13 115 204
90% 13 115 216
70% 13 115 244
50% 13 115 291
40% 35 303 89
30% 107 446 54
Entity #13: Chains: M - 50S ribosomal protein L16 protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 114 147
95% 13 114 213
90% 13 114 226
70% 13 114 252
50% 35 305 67
40% 35 305 87
30% 35 305 111
Entity #14: Chains: N - 50S ribosomal protein L17 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 114 148
95% 13 114 214
90% 13 114 227
70% 13 114 253
50% 36 305 59
40% 36 307 77
30% 36 309 98
Entity #15: Chains: O - 50S ribosomal protein L18 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 114 150
95% 13 114 216
90% 13 114 229
70% 13 114 254
50% 35 302 69
40% 35 302 92
30% 35 302 113
Entity #16: Chains: P - 50S ribosomal protein L19 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 114 152
95% 13 114 218
90% 13 114 231
70% 13 114 256
50% 13 116 287
40% 13 116 317
30% 13 116 329
Entity #17: Chains: Q - 50S ribosomal protein L20 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 115 143
95% 13 115 206
90% 13 115 218
70% 13 115 246
50% 36 308 61
40% 36 309 79
30% 36 309 102
Entity #18: Chains: R - 50S ribosomal protein L21 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 111 162
95% 13 111 229
90% 13 111 244
70% 13 111 266
50% 13 111 304
40% 35 303 90
30% 35 303 112
Entity #19: Chains: S - 50S ribosomal protein L22 protein, length: 110 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 114 151
95% 13 114 217
90% 13 114 230
70% 13 114 255
50% 37 288 79
40% 37 288 104
30% 37 290 121
Entity #2: Chains: C - 50S ribosomal protein L2 protein, length: 273 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 112 156
95% 13 112 221
90% 13 112 234
70% 13 112 259
50% 35 301 71
40% 35 301 94
30% 35 301 115
Entity #20: Chains: T - 50S ribosomal protein L23 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 118 131
95% 13 118 191
90% 13 118 204
70% 13 118 235
50% 13 118 282
40% 35 309 82
30% 91 387 69
Entity #21: Chains: U - 50S ribosomal protein L24 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 117 136
95% 13 117 200
90% 13 117 211
70% 13 117 241
50% 13 117 286
40% 35 283 107
30% 35 285 128
Entity #22: Chains: V - 50S ribosomal protein L25 protein, length: 94 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 120 127
95% 14 120 186
90% 14 120 196
70% 14 120 228
50% 14 120 277
40% 14 120 307
30% 14 120 320
Entity #23: Chains: W - 50S ribosomal protein L27 protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 114 153
95% 13 114 219
90% 13 114 232
70% 13 141 189
50% 36 306 63
40% 36 306 83
30% 36 306 104
Entity #24: Chains: X - 50S ribosomal protein L28 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 99 206
95% 13 99 290
90% 13 99 307
70% 13 99 324
50% 13 99 363
40% 13 99 383
30% 13 99 395
Entity #25: Chains: Y - 50S ribosomal protein L29 protein, length: 63 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 118 132
95% 13 118 192
90% 13 118 205
70% 13 118 236
50% 13 118 283
40% 35 278 111
30% 35 302 114
Entity #26: Chains: Z - 50S ribosomal protein L30 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 115 144
95% 13 115 207
90% 13 115 219
70% 13 115 247
50% 13 116 288
40% 36 309 81
30% 36 309 103
Entity #27: Chains: 0 - 50S ribosomal protein L32 protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 112 159
95% 13 112 226
90% 13 112 239
70% 13 112 263
50% 13 112 303
40% 35 300 95
30% 35 300 116
Entity #28: Chains: 1 - 50S ribosomal protein L33 protein, length: 55 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 114 154
95% 13 114 220
90% 13 114 233
70% 13 114 257
50% 13 134 249
40% 35 297 97
30% 35 297 117
Entity #29: Chains: 2 - 50S ribosomal protein L34 protein, length: 46 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 171
95% 13 110 242
90% 13 110 255
70% 13 136 201
50% 13 138 237
40% 13 138 268
30% 13 138 288
Entity #3: Chains: A - 23S rRNA rna, length: 2904 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #30: Chains: 3 - 50S ribosomal protein L35 protein, length: 65 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 170
95% 13 110 241
90% 13 110 254
70% 13 110 276
50% 13 110 311
40% 13 110 332
30% 13 110 345
Entity #31: Chains: 4 - 50S ribosomal protein L36 protein, length: 38 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 112 160
95% 13 112 227
90% 13 112 240
70% 13 112 264
50% 31 256 102
40% 31 256 127
30% 31 256 145
Entity #32: Chains: 5 - 50S ribosomal protein L10 protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 18 2076
95% 3 18 2630
90% 3 18 2666
70% 3 18 2669
50% 3 18 2661
40% 3 18 2613
30% 6 33 1354
Entity #33: Chains: 6 - 50S ribosomal protein L7/L12 protein, length: 121 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 12 1562
95% 1 12 2076
90% 1 12 2106
70% 1 12 2114
50% 3 20 1193
40% 3 20 1212
30% 3 21 1130
Entity #4: Chains: D - 50S ribosomal protein L3 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 115 140
95% 13 115 203
90% 13 115 215
70% 13 115 243
50% 35 306 66
40% 35 306 86
30% 35 307 110
Entity #5: Chains: E - 50S ribosomal protein L4 protein, length: 201 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 114 145
95% 13 114 211
90% 13 114 224
70% 13 114 250
50% 13 114 294
40% 14 117 310
30% 36 308 106
Entity #6: Chains: F - 50S ribosomal protein L5 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 117 135
95% 13 117 198
90% 13 117 209
70% 13 117 240
50% 37 306 64
40% 37 306 84
30% 37 306 107
Entity #7: Chains: G - 50S ribosomal protein L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 114 146
95% 13 114 212
90% 13 114 225
70% 13 114 251
50% 13 114 295
40% 36 310 80
30% 108 449 51
Entity #8: Chains: H - 50S ribosomal protein L9 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 10 4959
95% 5 10 5528
90% 5 10 5534
70% 5 10 5442
50% 8 21 2148
40% 8 23 1984
30% 8 23 1888
Entity #9: Chains: I - 50S ribosomal protein L11 protein, length: 142 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 118 130
95% 13 118 189
90% 13 118 203
70% 13 118 233
50% 20 204 122
40% 20 207 149
30% 20 209 173
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.