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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KIX
Sequence Clusters for the Sequence Entities in PDB 4KIX
Entity #1: Chains: B - 5S rRNA rna, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 50S ribosomal protein L13 protein, length: 142 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 143
95% 13 110 209
90% 13 110 222
70% 13 110 248
50% 27 265 90
40% 27 265 114
30% 27 266 139
Entity #11: Chains: K - 50S ribosomal protein L14 protein, length: 123 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 111 140
95% 13 111 204
90% 13 111 218
70% 13 111 244
50% 28 296 62
40% 28 297 81
30% 86 402 54
Entity #12: Chains: L - 50S ribosomal protein L15 protein, length: 144 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 142
95% 13 110 208
90% 13 110 221
70% 13 110 247
50% 13 110 296
40% 27 285 95
30% 85 394 61
Entity #13: Chains: M - 50S ribosomal protein L16 protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 150
95% 13 109 217
90% 13 109 231
70% 13 109 257
50% 27 287 73
40% 27 287 94
30% 27 287 116
Entity #14: Chains: N - 50S ribosomal protein L17 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 151
95% 13 109 218
90% 13 109 232
70% 13 109 258
50% 28 287 64
40% 28 289 82
30% 28 291 102
Entity #15: Chains: O - 50S ribosomal protein L18 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 153
95% 13 109 220
90% 13 109 234
70% 13 109 260
50% 27 284 78
40% 27 284 99
30% 27 284 119
Entity #16: Chains: P - 50S ribosomal protein L19 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 155
95% 13 109 222
90% 13 109 236
70% 13 109 262
50% 13 111 290
40% 13 111 314
30% 13 111 329
Entity #17: Chains: Q - 50S ribosomal protein L20 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 145
95% 13 110 211
90% 13 110 224
70% 13 110 250
50% 28 290 66
40% 28 291 84
30% 28 291 105
Entity #18: Chains: R - 50S ribosomal protein L21 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 106 176
95% 13 106 250
90% 13 106 262
70% 13 106 287
50% 13 106 317
40% 27 285 96
30% 27 285 118
Entity #19: Chains: S - 50S ribosomal protein L22 protein, length: 110 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 154
95% 13 109 221
90% 13 109 235
70% 13 109 261
50% 29 270 87
40% 29 270 108
30% 29 272 130
Entity #2: Chains: C - 50S ribosomal protein L2 protein, length: 273 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 167
95% 13 107 240
90% 13 107 250
70% 13 107 274
50% 27 283 79
40% 27 283 100
30% 27 283 122
Entity #20: Chains: T - 50S ribosomal protein L23 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 113 134
95% 13 113 196
90% 13 113 210
70% 13 113 238
50% 13 113 280
40% 27 291 87
30% 83 369 73
Entity #21: Chains: U - 50S ribosomal protein L24 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 112 139
95% 13 112 202
90% 13 112 216
70% 13 112 242
50% 13 112 287
40% 27 265 115
30% 27 267 137
Entity #22: Chains: V - 50S ribosomal protein L25 protein, length: 94 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 115 130
95% 14 115 190
90% 14 115 203
70% 14 115 234
50% 14 115 275
40% 14 115 300
30% 14 115 318
Entity #23: Chains: W - 50S ribosomal protein L27 protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 156
95% 13 109 223
90% 13 109 237
70% 13 136 191
50% 28 288 67
40% 28 288 88
30% 28 288 108
Entity #24: Chains: X - 50S ribosomal protein L28 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 94 213
95% 13 94 297
90% 13 94 316
70% 13 94 338
50% 13 94 370
40% 13 94 390
30% 13 94 398
Entity #25: Chains: Y - 50S ribosomal protein L29 protein, length: 63 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 113 135
95% 13 113 197
90% 13 113 211
70% 13 113 239
50% 13 113 281
40% 27 260 118
30% 27 284 120
Entity #26: Chains: Z - 50S ribosomal protein L30 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 146
95% 13 110 213
90% 13 110 226
70% 13 110 252
50% 13 111 292
40% 28 291 86
30% 28 291 107
Entity #27: Chains: 0 - 50S ribosomal protein L32 protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 171
95% 13 107 244
90% 13 107 254
70% 13 107 279
50% 13 107 311
40% 27 282 102
30% 27 282 124
Entity #28: Chains: 1 - 50S ribosomal protein L33 protein, length: 55 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 147
95% 13 110 214
90% 13 110 227
70% 13 110 253
50% 13 130 243
40% 27 280 104
30% 27 280 126
Entity #29: Chains: 2 - 50S ribosomal protein L34 protein, length: 46 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 105 182
95% 13 105 260
90% 13 105 270
70% 13 131 205
50% 13 133 237
40% 13 133 264
30% 13 133 286
Entity #3: Chains: A - 23S rRNA rna, length: 2904 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #30: Chains: 3 - 50S ribosomal protein L35 protein, length: 65 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 105 181
95% 13 105 259
90% 13 105 269
70% 13 105 292
50% 13 105 320
40% 13 105 343
30% 13 105 354
Entity #31: Chains: 4 - 50S ribosomal protein L36 protein, length: 38 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 172
95% 13 107 245
90% 13 107 255
70% 13 107 280
50% 23 238 109
40% 23 238 132
30% 23 238 152
Entity #32: Chains: 5 - 50S ribosomal protein L10 protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 17 2086
95% 3 17 2651
90% 3 17 2699
70% 3 17 2705
50% 3 17 2723
40% 3 17 2678
30% 6 31 1366
Entity #33: Chains: 6 - 50S ribosomal protein L7/L12 protein, length: 121 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 11 1536
95% 1 11 2046
90% 1 11 2079
70% 1 11 2108
50% 3 19 1151
40% 3 19 1185
30% 3 20 1084
Entity #4: Chains: D - 50S ribosomal protein L3 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 141
95% 13 110 207
90% 13 110 220
70% 13 110 246
50% 27 288 72
40% 27 288 92
30% 27 289 114
Entity #5: Chains: E - 50S ribosomal protein L4 protein, length: 201 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 148
95% 13 109 215
90% 13 109 229
70% 13 109 255
50% 13 109 298
40% 14 112 307
30% 28 290 109
Entity #6: Chains: F - 50S ribosomal protein L5 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 112 137
95% 13 112 199
90% 13 112 213
70% 13 112 240
50% 29 288 68
40% 29 288 89
30% 29 288 110
Entity #7: Chains: G - 50S ribosomal protein L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 109 149
95% 13 109 216
90% 13 109 230
70% 13 109 256
50% 13 109 299
40% 28 292 85
30% 86 397 60
Entity #8: Chains: H - 50S ribosomal protein L9 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 9 5331
95% 5 9 5934
90% 5 9 5920
70% 5 9 5762
50% 8 20 2172
40% 8 22 2001
30% 8 22 1902
Entity #9: Chains: I - 50S ribosomal protein L11 protein, length: 142 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 113 132
95% 13 113 195
90% 13 113 209
70% 13 113 237
50% 20 196 127
40% 20 199 155
30% 20 201 178
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.