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Control of ribosomal subunit rotation by elongation factor G
Sequence Clustering and Redundancy Reduction Results
4KIX
Sequence Clusters for the Sequence Entities in PDB 4KIX
Entity #1: Chains: B - 5S rRNA rna, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 50S ribosomal protein L13 protein, length: 142 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 111 145
95% 13 111 211
90% 13 111 226
70% 13 111 249
50% 35 279 85
40% 35 279 108
30% 35 280 131
Entity #11: Chains: K - 50S ribosomal protein L14 protein, length: 123 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 112 142
95% 13 112 208
90% 13 112 221
70% 13 112 246
50% 36 310 58
40% 36 311 75
30% 106 443 48
Entity #12: Chains: L - 50S ribosomal protein L15 protein, length: 144 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 111 144
95% 13 111 210
90% 13 111 225
70% 13 111 248
50% 13 111 298
40% 35 299 91
30% 105 435 53
Entity #13: Chains: M - 50S ribosomal protein L16 protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 152
95% 13 110 220
90% 13 110 234
70% 13 110 257
50% 35 301 68
40% 35 301 90
30% 35 301 110
Entity #14: Chains: N - 50S ribosomal protein L17 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 154
95% 13 110 222
90% 13 110 236
70% 13 110 259
50% 36 301 59
40% 36 303 77
30% 36 305 99
Entity #15: Chains: O - 50S ribosomal protein L18 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 155
95% 13 110 223
90% 13 110 237
70% 13 110 260
50% 35 298 69
40% 35 298 93
30% 35 298 113
Entity #16: Chains: P - 50S ribosomal protein L19 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 157
95% 13 110 225
90% 13 110 239
70% 13 110 262
50% 13 112 295
40% 13 112 320
30% 13 112 337
Entity #17: Chains: Q - 50S ribosomal protein L20 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 111 146
95% 13 111 212
90% 13 111 227
70% 13 111 250
50% 36 304 60
40% 36 305 79
30% 36 305 101
Entity #18: Chains: R - 50S ribosomal protein L21 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 107 175
95% 13 107 248
90% 13 107 259
70% 13 107 282
50% 13 107 318
40% 35 299 92
30% 35 299 112
Entity #19: Chains: S - 50S ribosomal protein L22 protein, length: 110 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 156
95% 13 110 224
90% 13 110 238
70% 13 110 261
50% 37 284 79
40% 37 284 103
30% 37 286 125
Entity #2: Chains: C - 50S ribosomal protein L2 protein, length: 273 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 163
95% 13 108 233
90% 13 108 246
70% 13 108 268
50% 35 297 70
40% 35 297 94
30% 35 297 115
Entity #20: Chains: T - 50S ribosomal protein L23 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 114 135
95% 13 114 198
90% 13 114 213
70% 13 114 240
50% 13 114 286
40% 35 305 82
30% 91 383 70
Entity #21: Chains: U - 50S ribosomal protein L24 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 113 139
95% 13 113 203
90% 13 113 216
70% 13 113 243
50% 13 113 290
40% 35 279 109
30% 35 281 130
Entity #22: Chains: V - 50S ribosomal protein L25 protein, length: 94 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 116 132
95% 14 116 193
90% 14 116 207
70% 14 116 236
50% 14 116 281
40% 14 116 311
30% 14 116 328
Entity #23: Chains: W - 50S ribosomal protein L27 protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 158
95% 13 110 227
90% 13 110 241
70% 13 137 196
50% 36 302 63
40% 36 302 83
30% 36 302 103
Entity #24: Chains: X - 50S ribosomal protein L28 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 95 213
95% 13 95 300
90% 13 95 320
70% 13 95 340
50% 13 95 377
40% 13 95 397
30% 13 95 407
Entity #25: Chains: Y - 50S ribosomal protein L29 protein, length: 63 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 114 136
95% 13 114 199
90% 13 114 214
70% 13 114 241
50% 13 114 287
40% 35 274 115
30% 35 298 114
Entity #26: Chains: Z - 50S ribosomal protein L30 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 111 147
95% 13 111 213
90% 13 111 228
70% 13 111 251
50% 13 112 297
40% 36 303 86
30% 36 303 106
Entity #27: Chains: 0 - 50S ribosomal protein L32 protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 172
95% 13 108 245
90% 13 108 256
70% 13 108 278
50% 13 108 315
40% 35 296 96
30% 35 296 117
Entity #28: Chains: 1 - 50S ribosomal protein L33 protein, length: 55 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 111 148
95% 13 111 214
90% 13 111 229
70% 13 111 252
50% 13 131 251
40% 35 294 97
30% 35 294 118
Entity #29: Chains: 2 - 50S ribosomal protein L34 protein, length: 46 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 106 183
95% 13 106 257
90% 13 106 270
70% 13 132 209
50% 13 134 240
40% 13 134 267
30% 13 134 291
Entity #3: Chains: A - 23S rRNA rna, length: 2904 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #30: Chains: 3 - 50S ribosomal protein L35 protein, length: 65 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 106 182
95% 13 106 256
90% 13 106 269
70% 13 106 293
50% 13 106 327
40% 13 106 350
30% 13 106 362
Entity #31: Chains: 4 - 50S ribosomal protein L36 protein, length: 38 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 108 173
95% 13 108 246
90% 13 108 257
70% 13 108 279
50% 31 252 102
40% 31 252 128
30% 31 252 149
Entity #32: Chains: 5 - 50S ribosomal protein L10 protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 18 2051
95% 3 18 2610
90% 3 18 2647
70% 3 18 2644
50% 3 18 2637
40% 3 18 2592
30% 6 33 1341
Entity #33: Chains: 6 - 50S ribosomal protein L7/L12 protein, length: 121 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 12 1542
95% 1 12 2054
90% 1 12 2082
70% 1 12 2092
50% 3 20 1182
40% 3 20 1200
30% 3 21 1118
Entity #4: Chains: D - 50S ribosomal protein L3 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 111 143
95% 13 111 209
90% 13 111 224
70% 13 111 247
50% 35 302 66
40% 35 302 88
30% 35 303 107
Entity #5: Chains: E - 50S ribosomal protein L4 protein, length: 201 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 149
95% 13 110 218
90% 13 110 232
70% 13 110 255
50% 13 110 304
40% 14 113 313
30% 36 304 104
Entity #6: Chains: F - 50S ribosomal protein L5 protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 113 137
95% 13 113 202
90% 13 113 215
70% 13 113 242
50% 37 302 64
40% 37 302 84
30% 37 302 105
Entity #7: Chains: G - 50S ribosomal protein L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 110 150
95% 13 110 219
90% 13 110 233
70% 13 110 256
50% 13 110 305
40% 36 306 80
30% 104 432 55
Entity #8: Chains: H - 50S ribosomal protein L9 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 9 5416
95% 5 9 6029
90% 5 9 6014
70% 5 9 5848
50% 8 20 2216
40% 8 22 2042
30% 8 22 1938
Entity #9: Chains: I - 50S ribosomal protein L11 protein, length: 142 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 114 133
95% 13 114 197
90% 13 114 212
70% 13 114 239
50% 20 200 127
40% 20 203 151
30% 20 205 174
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.