Sequence Similarity Clusters for the Entities in PDB 4KI2

Entity #1 | Chains: D,E,F,G
DNA (5'-D(*TP*GP*TP*AP*CP*AP*AP*TP*GP*GP*G)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
RNA polymerase sigma factor protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 12867
95 % 4 4 12405 Flexibility: Low
Max RMSD: 14.9, Avg RMSD: 2.6
PDBFlex
90 % 4 4 12235
70 % 4 4 11556
50 % 4 4 10338
40 % 4 4 9372
30 % 4 4 8182

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures