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Ternary complex of rb69 mutant L415F with a ribonucleotide at -1 position
Sequence Clustering and Redundancy Reduction Results
4KHU
Cluster # 167 Members. Sequence cutoff: 50% Cluster size: 119 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 3QEX 1 A DNA polymerase 12353   2.7.7.7   
2 4J2D 1 A DNA polymerase 12353   2.7.7.7   
3 3QEV 1 A DNA polymerase 12353   2.7.7.7   
4 3QEP 1 A DNA polymerase 12353   2.7.7.7   
5 3NCI 1 A DNA polymerase DNA polymerase 12353   2.7.7.7   
6 4J2A 1 A DNA polymerase 12353   2.7.7.7   
7 3QEW 1 A DNA polymerase 12353   2.7.7.7   
8 4DTX 1 A DNA polymerase 12353   2.7.7.7   
9 4DTU 1 A DNA polymerase 12353   2.7.7.7   
10 3SQ1 1 A DNA polymerase 12353   2.7.7.7   
11 4M3Z 1 A DNA polymerase 12353   2.7.7.7   
12 3SI6 3 A DNA polymerase 12353   2.7.7.7   
13 3QNO 1 A DNA Polymerase 12353   2.7.7.7   
14 4FJL 1 A DNA polymerase 12353   2.7.7.7   
15 4DTJ 1 A DNA polymerase 12353   2.7.7.7   
16 4M3Y 1 A DNA polymerase 12353   2.7.7.7   
17 4M3T 1 A DNA polymerase 12353   2.7.7.7   
18 4DTS 1 A DNA polymerase 12353   2.7.7.7   
19 4FJ7 1 A DNA polymerase 12353   2.7.7.7   
20 4M45 1 A DNA polymerase 12353   2.7.7.7   
21 3UIQ 1 A DNA polymerase 12353   2.7.7.7   
22 3S9H 3 A DNA polymerase 12353   2.7.7.7   
23 3QNN 1 A DNA polymerase 12353   2.7.7.7   
24 4FK4 1 A DNA polymerase 12353   2.7.7.7   
25 3NGI 1 A DNA polymerase 12353   2.7.7.7   
26 3QER 1 A DNA polymerase 12353   2.7.7.7   
27 4DTM 1 A DNA polymerase 12353   2.7.7.7   
28 3QES 1 A DNA polymerase 12353   2.7.7.7   
29 4DTN 1 A DNA polymerase 12353   2.7.7.7   
30 4FK2 1 A DNA polymerase 12353   2.7.7.7   
31 4J2B 1 A DNA polymerase RB69 DNA polymerase 12353   2.7.7.7   
32 4FJJ 1 A DNA polymerase 12353   2.7.7.7   
33 4FJK 1 A DNA polymerase 12353   2.7.7.7   
34 4FJ9 1 A DNA polymerase 12353   2.7.7.7   
35 4J2E 1 A DNA polymerase RB69 DNA polymerase 12353   2.7.7.7   
36 3NE6 1 A DNA polymerase 12353   2.7.7.7   
37 3NDK 1 A DNA polymerase 12353   2.7.7.7   
38 4FJN 1 A DNA polymerase 12353   2.7.7.7   
39 4E3S 1 A DNA polymerase 12353   2.7.7.7   
40 4DTR 1 A DNA polymerase 12353   2.7.7.7   
41 3SNN 3 A DNA polymerase 12353   2.7.7.7   
42 4FJM 1 A DNA polymerase 12353   2.7.7.7   
43 4M3U 1 A DNA polymerase 12353   2.7.7.7   
44 4M42 1 A DNA polymerase 12353   2.7.7.7   
45 3NAE 1 A DNA polymerase 12353   2.7.7.7   
46 4M3R 1 A DNA polymerase 12353   2.7.7.7   
47 4DU3 1 A DNA polymerase 12353   2.7.7.7   
48 4FJ5 1 A DNA polymerase 12353   2.7.7.7   
49 4DTO 1 A DNA polymerase 12353   2.7.7.7   
50 3QET 1 A DNA polymerase 12353   2.7.7.7   
51 4M3W 1 A DNA polymerase 12353   2.7.7.7   
52 4DTP 1 A DNA polymerase 12353   2.7.7.7   
53 4FJH 1 A DNA polymerase 12353   2.7.7.7   
54 4KHS 1 A DNA polymerase 12353   2.7.7.7   
55 3SQ0 1 A DNA polymerase 12353   2.7.7.7   
56 4FJX 1 A DNA polymerase 12353   2.7.7.7   
57 3LZJ 1 A DNA polymerase 12353   2.7.7.7   
58 4KHU 1 A DNA polymerase 12353   2.7.7.7   
59 4KHQ 1 A DNA polymerase 12353   2.7.7.7   
60 3SPY 1 A DNA polymerase 12353   2.7.7.7   
61 4FJG 1 A DNA polymerase 12353   2.7.7.7   
62 3SQ2 1 A DNA polymerase 12353   2.7.7.7   
63 4M41 1 A DNA polymerase 12353   2.7.7.7   
64 3QEI 1 A DNA polymerase 12353   2.7.7.7   
65 4DU1 1 A DNA polymerase 12353   2.7.7.7   
66 4M3X 1 A DNA polymerase 12353   2.7.7.7   
67 4FK0 1 A DNA polymerase 12353   2.7.7.7   
68 4FJ8 1 A DNA polymerase 12353   2.7.7.7   
69 4KHW 1 A DNA polymerase 12353   2.7.7.7   
70 3L8B 1 A, B DNA polymerase 12353   2.7.7.7   
71 3SQ4 1 A DNA polymerase 12353   2.7.7.7   
72 4KHY 1 A DNA polymerase 12353   2.7.7.7   
73 4FJI 1 A DNA polymerase 12353   2.7.7.7   
74 4DU4 1 A DNA polymerase 12353   2.7.7.7   
75 3SUO 1 A DNA polymerase 12353   2.7.7.7   
76 1IH7 1 A DNA POLYMERASE 12353   2.7.7.7   
77 3SUP 1 A DNA polymerase 12353   2.7.7.7   
78 3LZI 1 A DNA polymerase 12353   2.7.7.7   
79 4KHN 1 A, B DNA polymerase 12353   2.7.7.7   
80 3CFR 3 A DNA polymerase 12353   2.7.7.7   
81 3SJJ 1 A DNA polymerase 12353   2.7.7.7   
82 4KI4 1 A DNA polymerase 12353   2.7.7.7   
83 3NHG 1 A DNA polymerase 12353   2.7.7.7   
84 3SCX 3 A DNA polymerase 12353   2.7.7.7   
85 3SPZ 1 A DNA polymerase 12353   2.7.7.7   
86 3SUN 1 A DNA polymerase 12353   2.7.7.7   
87 3RWU 1 A DNA polymerase 12353   2.7.7.7   
88 3CFP 3 A DNA polymerase 12353   2.7.7.7   
89 2DTU 3 A, B, C, D DNA polymerase 12353   2.7.7.7   
90 4KI6 1 A DNA polymerase 12353   2.7.7.7   
91 3CFO 1 A DNA polymerase 12353   2.7.7.7   
92 3CQ8 3 A DNA polymerase RB69 polymerase 12353   2.7.7.7   
93 1IG9 3 A DNA POLYMERASE 12353   2.7.7.7   
94 4I9Q 1 A, B DNA polymerase 12353   2.7.7.7   
95 4I9L 1 A DNA polymerase 12353   2.7.7.7   
96 3KD1 3 E DNA polymerase RB69 gp43 exo- chimera containing elements from the fingers domain of the human cytomegalovirus DNA polymerase. 12353   2.7.7.7   
97 3RMB 1 A, B, C, D DNA polymerase 12353   2.7.7.7   
98 1Q9X 3 A, B, C, D DNA polymerase 12353   2.7.7.7   
99 3KD5 3 E DNA polymerase RB69 gp43 exo- chimera containing elements from the fingers domain of the human cytomegalovirus DNA polymerase. 12353   2.7.7.7   
100 1Q9Y 3 A DNA POLYMERASE 12353   2.7.7.7   
101 2DY4 3 A, B, C, D DNA polymerase 12353   2.7.7.7   
102 1WAJ 1 A DNA POLYMERASE 12353   2.7.7.7   
103 2OZS 3 A DNA polymerase 12353   2.7.7.7   
104 1CLQ 3 A PROTEIN (DNA POLYMERASE) RESIDUES 1-903 12353   2.7.7.7   
105 3TAE 3 A, B, C, D DNA polymerase 12353   2.7.7.7   
106 2OZM 3 A DNA polymerase 12353   2.7.7.7   
107 3RMA 1 A, B, C, D DNA polymerase 12353   2.7.7.7   
108 3TAB 1 A, B, C, D DNA polymerase 12353   2.7.7.7   
109 2P5G 3 A, B, C, D DNA polymerase 12353   2.7.7.7   
110 3RMD 1 A, B, C, D DNA polymerase 12353   2.7.7.7   
111 2OYQ 3 A, B, C, D DNA polymerase 12353   2.7.7.7   
112 1WAF 1 A, B DNA POLYMERASE 12353   2.7.7.7   
113 2P5O 3 A, B, C, D DNA polymerase 12353   2.7.7.7   
114 3RMC 1 A, B, C, D DNA polymerase 12353   2.7.7.7   
115 3TAF 1 A, B, C, D DNA polymerase 12353   2.7.7.7   
116 3TAG 1 A, B, C, D DNA polymerase 12353   2.7.7.7   
117 3LDS 1 A DNA polymerase gp43 12353   2.7.7.7   
118 3SUQ 1 A DNA polymerase 12353   2.7.7.7   
119 2ATQ 1 A DNA polymerase C-terminus is fused to a linker not seen in the density 12353   2.7.7.7   
 
Sequence Clusters for the Sequence Entities in PDB 4KHU
Entity #1: Chains: A - DNA polymerase protein, length: 903 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 8 5388
95% 58 119 90
90% 58 119 98
70% 58 119 121
50% 58 119 167
40% 58 119 201
30% 58 119 221
Entity #2: Chains: T - DNA/RNA (5'-D(*AP*CP*A)-R(P*G)-D(P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3') hybrid, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: P - DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3') dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.