Sequence Similarity Clusters for the Entities in PDB 4KHU

Entity #1 | Chains: A
DNA polymerase protein, length: 903 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 7617
95 % 59 120 223 Flexibility: Medium
Max RMSD: 7.3, Avg RMSD: 3.3
PDBFlex
90 % 59 120 231
70 % 59 120 262
50 % 59 120 282
40 % 59 120 304
30 % 59 120 311
Entity #2 | Chains: T
DNA/RNA (5'-D(*AP*CP*A)-R(P*G)-D(P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3') hybrid, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: P
DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3') dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4KHS 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
2 4KHU 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
3 4KHQ 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
4 4KHW 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
5 4KHY 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
6 4KI4 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
7 4KI6 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
8 3CQ8 3 A DNA polymerase RB69 polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details