Sequence Similarity Clusters for the Entities in PDB 4KHU

Entity #1 | Chains: A
DNA polymerase protein, length: 903 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 40 457
95 % 59 120 236 Flexibility: Medium
Max RMSD: 7.3, Avg RMSD: 3.3
PDBFlex
90 % 59 120 243
70 % 59 120 273
50 % 59 120 303
40 % 59 120 334
30 % 59 120 341
Entity #2 | Chains: T
DNA/RNA (5'-D(*AP*CP*A)-R(P*G)-D(P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3') hybrid, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: P
DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3') dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3NCI 1 A DNA polymerase DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
2 3UIQ 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
3 4DU3 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
4 5GNQ 1 A, B DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
5 4KHS 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
6 4KHU 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
7 4KHQ 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
8 3SQ2 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
9 4DU1 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
10 4KHW 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
11 3L8B 1 A, B DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
12 3SQ4 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
13 4KHY 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
14 4DU4 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
15 1IH7 1 A DNA POLYMERASE 1914161 2.7.7.7 | Details 3.1.11 | Details
16 4KI4 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
17 4KI6 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
18 3CQ8 3 A DNA polymerase RB69 polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
19 1IG9 3 A DNA POLYMERASE 1914161 2.7.7.7 | Details 3.1.11 | Details
20 4I9L 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
21 3RMB 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
22 1Q9X 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
23 1Q9Y 3 A DNA POLYMERASE 1914161 2.7.7.7 | Details 3.1.11 | Details
24 2DY4 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
25 1WAJ 1 A DNA POLYMERASE 1914161 2.7.7.7 | Details 3.1.11 | Details
26 2OZS 3 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
27 1CLQ 3 A PROTEIN (DNA POLYMERASE) RESIDUES 1-903 1914161 2.7.7.7 | Details 3.1.11 | Details
28 3TAE 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
29 2OZM 3 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
30 3RMA 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
31 3TAB 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
32 2P5G 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
33 3RMD 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
34 2OYQ 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
35 1WAF 1 A, B DNA POLYMERASE 1914161 2.7.7.7 | Details 3.1.11 | Details
36 2P5O 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
37 3RMC 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
38 3TAF 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
39 3TAG 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
40 2ATQ 1 A DNA polymerase C-terminus is fused to a linker not seen in the density 1914161 2.7.7.7 | Details 3.1.11 | Details