Sequence Similarity Clusters for the Entities in PDB 4KHS

Entity #1 | Chains: A
DNA polymerase protein, length: 903 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 7617
95 % 55 120 223 Flexibility: Medium
Max RMSD: 7.3, Avg RMSD: 3.3
PDBFlex
90 % 55 120 231
70 % 55 120 262
50 % 55 120 282
40 % 55 120 304
30 % 55 120 311
Entity #2 | Chains: P
DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3') dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: T
DNA/RNA (5'-D(*AP*C)-R(P*A)-D(P*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3') hybrid, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3QEX 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
2 4J2D 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
3 3QEV 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
4 3QEP 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
5 3NCI 1 A DNA polymerase DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
6 4J2A 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
7 3QEW 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
8 4DTX 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
9 4DTU 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
10 3SQ1 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
11 4M3Z 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
12 3SI6 3 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
13 3QNO 1 A DNA Polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
14 4FJL 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
15 4DTJ 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
16 4M3Y 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
17 4M3T 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
18 4DTS 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
19 4FJ7 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
20 4M45 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
21 3UIQ 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
22 3S9H 3 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
23 3QNN 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
24 4FK4 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
25 3NGI 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
26 3QER 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
27 4DTM 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
28 3QES 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
29 4DTN 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
30 4FK2 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
31 4J2B 1 A DNA polymerase RB69 DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
32 4FJJ 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
33 4FJK 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
34 4FJ9 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
35 4J2E 1 A DNA polymerase RB69 DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
36 3NE6 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
37 3NDK 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
38 4FJN 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
39 4E3S 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
40 4DTR 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
41 3SNN 3 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
42 4FJM 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
43 4M3U 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
44 4M42 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
45 3NAE 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
46 4M3R 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
47 4DU3 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
48 4FJ5 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
49 4DTO 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
50 3QET 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
51 4M3W 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
52 4DTP 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
53 4FJH 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
54 5GNQ 1 A, B DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
55 4KHS 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
56 3SQ0 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
57 4FJX 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
58 3LZJ 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
59 4KHU 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
60 4KHQ 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
61 3SPY 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
62 4FJG 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
63 3SQ2 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
64 4M41 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
65 3QEI 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
66 4DU1 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
67 4M3X 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
68 4FK0 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
69 4FJ8 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
70 4KHW 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
71 3L8B 1 A, B DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
72 3SQ4 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
73 4KHY 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
74 4FJI 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
75 4DU4 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
76 3SUO 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
77 1IH7 1 A DNA POLYMERASE 1914161 2.7.7.7 | Details 3.1.11 | Details
78 3SUP 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
79 3LZI 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
80 4KHN 1 A, B DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
81 3CFR 3 A DNA polymerase 12353 2.7.7.7 | Details 3.1.11 | Details
82 3SJJ 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
83 4KI4 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
84 3NHG 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
85 3SCX 3 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
86 3SPZ 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
87 3SUN 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
88 3RWU 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
89 3CFP 3 A DNA polymerase 12353 2.7.7.7 | Details 3.1.11 | Details
90 2DTU 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
91 4KI6 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
92 3CFO 1 A DNA polymerase 12353 2.7.7.7 | Details 3.1.11 | Details
93 3CQ8 3 A DNA polymerase RB69 polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
94 1IG9 3 A DNA POLYMERASE 1914161 2.7.7.7 | Details 3.1.11 | Details
95 4I9Q 1 A, B DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
96 4I9L 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
97 3KD1 3 E DNA polymerase RB69 gp43 exo- chimera containing elements from the fingers domain of the human cytomegalovirus DNA polymerase. 1914161 2.7.7.7 | Details 3.1.11 | Details
98 3RMB 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
99 1Q9X 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
100 3KD5 3 E DNA polymerase RB69 gp43 exo- chimera containing elements from the fingers domain of the human cytomegalovirus DNA polymerase. 1914161 2.7.7.7 | Details 3.1.11 | Details
101 1Q9Y 3 A DNA POLYMERASE 1914161 2.7.7.7 | Details 3.1.11 | Details
102 2DY4 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
103 1WAJ 1 A DNA POLYMERASE 1914161 2.7.7.7 | Details 3.1.11 | Details
104 2OZS 3 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
105 1CLQ 3 A PROTEIN (DNA POLYMERASE) RESIDUES 1-903 1914161 2.7.7.7 | Details 3.1.11 | Details
106 3TAE 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
107 2OZM 3 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
108 3RMA 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
109 3TAB 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
110 2P5G 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
111 3RMD 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
112 2OYQ 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
113 1WAF 1 A, B DNA POLYMERASE 1914161 2.7.7.7 | Details 3.1.11 | Details
114 2P5O 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
115 3RMC 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
116 3TAF 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
117 3TAG 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
118 3LDS 1 A DNA polymerase gp43 1914161 2.7.7.7 | Details 3.1.11 | Details
119 3SUQ 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
120 2ATQ 1 A DNA polymerase C-terminus is fused to a linker not seen in the density 1914161 2.7.7.7 | Details 3.1.11 | Details