Sequence Similarity Clusters for the Entities in PDB 4KHS

Entity #1 | Chains: A
DNA polymerase protein, length: 903 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 7507
95 % 55 120 217 Flexibility: Medium
Max RMSD: 7.3, Avg RMSD: 3.2
PDBFlex
90 % 55 120 226
70 % 55 120 254
50 % 55 120 274
40 % 55 120 294
30 % 55 120 301
Entity #2 | Chains: P
DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3') dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: T
DNA/RNA (5'-D(*AP*C)-R(P*A)-D(P*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3') hybrid, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3QEX 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
2 4J2D 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
3 3QEV 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
4 3QEP 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
5 3NCI 1 A DNA polymerase DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
6 4J2A 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
7 3QEW 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
8 4DTX 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
9 4DTU 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
10 3SQ1 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
11 4M3Z 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
12 3SI6 3 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
13 3QNO 1 A DNA Polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
14 4FJL 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
15 4DTJ 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
16 4M3Y 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
17 4M3T 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
18 4DTS 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
19 4FJ7 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
20 4M45 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
21 3UIQ 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
22 3S9H 3 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
23 3QNN 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
24 4FK4 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
25 3NGI 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
26 3QER 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
27 4DTM 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
28 3QES 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
29 4DTN 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
30 4FK2 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
31 4J2B 1 A DNA polymerase RB69 DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
32 4FJJ 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
33 4FJK 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
34 4FJ9 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
35 4J2E 1 A DNA polymerase RB69 DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
36 3NE6 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
37 3NDK 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
38 4FJN 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
39 4E3S 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
40 4DTR 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
41 3SNN 3 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
42 4FJM 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
43 4M3U 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
44 4M42 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
45 3NAE 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
46 4M3R 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
47 4DU3 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
48 4FJ5 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
49 4DTO 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
50 3QET 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
51 4M3W 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
52 4DTP 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
53 4FJH 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
54 5GNQ 1 A, B DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
55 4KHS 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
56 3SQ0 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
57 4FJX 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
58 3LZJ 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
59 4KHU 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
60 4KHQ 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
61 3SPY 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
62 4FJG 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
63 3SQ2 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
64 4M41 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
65 3QEI 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
66 4DU1 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
67 4M3X 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
68 4FK0 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
69 4FJ8 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
70 4KHW 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
71 3L8B 1 A, B DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
72 3SQ4 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
73 4KHY 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
74 4FJI 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
75 4DU4 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
76 3SUO 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
77 1IH7 1 A DNA POLYMERASE 1914161 2.7.7.7 | Details 3.1.11 | Details
78 3SUP 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
79 3LZI 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
80 4KHN 1 A, B DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
81 3CFR 3 A DNA polymerase 12353 2.7.7.7 | Details 3.1.11 | Details
82 3SJJ 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
83 4KI4 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
84 3NHG 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
85 3SCX 3 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
86 3SPZ 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
87 3SUN 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
88 3RWU 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
89 3CFP 3 A DNA polymerase 12353 2.7.7.7 | Details 3.1.11 | Details
90 2DTU 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
91 4KI6 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
92 3CFO 1 A DNA polymerase 12353 2.7.7.7 | Details 3.1.11 | Details
93 3CQ8 3 A DNA polymerase RB69 polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
94 1IG9 3 A DNA POLYMERASE 1914161 2.7.7.7 | Details 3.1.11 | Details
95 4I9Q 1 A, B DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
96 4I9L 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
97 3KD1 3 E DNA polymerase RB69 gp43 exo- chimera containing elements from the fingers domain of the human cytomegalovirus DNA polymerase. 1914161 2.7.7.7 | Details 3.1.11 | Details
98 3RMB 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
99 1Q9X 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
100 3KD5 3 E DNA polymerase RB69 gp43 exo- chimera containing elements from the fingers domain of the human cytomegalovirus DNA polymerase. 1914161 2.7.7.7 | Details 3.1.11 | Details
101 1Q9Y 3 A DNA POLYMERASE 1914161 2.7.7.7 | Details 3.1.11 | Details
102 2DY4 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
103 1WAJ 1 A DNA POLYMERASE 1914161 2.7.7.7 | Details 3.1.11 | Details
104 2OZS 3 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
105 1CLQ 3 A PROTEIN (DNA POLYMERASE) RESIDUES 1-903 1914161 2.7.7.7 | Details 3.1.11 | Details
106 3TAE 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
107 2OZM 3 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
108 3RMA 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
109 3TAB 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
110 2P5G 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
111 3RMD 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
112 2OYQ 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
113 1WAF 1 A, B DNA POLYMERASE 1914161 2.7.7.7 | Details 3.1.11 | Details
114 2P5O 3 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
115 3RMC 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
116 3TAF 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
117 3TAG 1 A, B, C, D DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
118 3LDS 1 A DNA polymerase gp43 1914161 2.7.7.7 | Details 3.1.11 | Details
119 3SUQ 1 A DNA polymerase 1914161 2.7.7.7 | Details 3.1.11 | Details
120 2ATQ 1 A DNA polymerase C-terminus is fused to a linker not seen in the density 1914161 2.7.7.7 | Details 3.1.11 | Details