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Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin
Sequence Clustering and Redundancy Reduction Results
4KHP
Sequence Clusters for the Sequence Entities in PDB 4KHP
Entity #1: Chains: A - 16S Ribosomal RNA rna, length: 1506 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S Ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 187 28
95% 18 188 47
90% 18 188 50
70% 18 188 60
50% 25 269 34
40% 25 269 45
30% 25 274 65
Entity #11: Chains: K - 30S Ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 189 26
95% 18 189 43
90% 18 189 46
70% 18 189 56
50% 19 263 41
40% 24 316 35
30% 24 316 45
Entity #12: Chains: L - 30S Ribosomal protein S12 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 158 35
95% 18 196 35
90% 18 196 37
70% 19 275 24
50% 19 275 33
40% 19 275 44
30% 19 275 69
Entity #13: Chains: M - 30S Ribosomal protein S13 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 190 23
95% 18 190 41
90% 18 190 44
70% 18 190 54
50% 19 268 38
40% 19 268 51
30% 22 317 48
Entity #14: Chains: N - 30S Ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 188 27
95% 18 188 48
90% 18 188 51
70% 18 188 61
50% 18 188 94
40% 18 188 119
30% 18 188 142
Entity #15: Chains: O - 30S Ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 192 21
95% 19 197 33
90% 19 197 35
70% 19 197 47
50% 23 276 32
40% 23 276 43
30% 23 276 66
Entity #16: Chains: P - 30S Ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 184 29
95% 18 189 45
90% 18 189 48
70% 18 189 58
50% 18 189 92
40% 18 189 117
30% 19 266 76
Entity #17: Chains: Q - 30S Ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 104 55
95% 18 183 49
90% 18 187 52
70% 18 187 62
50% 18 187 95
40% 18 187 120
30% 18 187 143
Entity #18: Chains: R - 30S Ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 17 1132
95% 2 23 1069
90% 2 23 1089
70% 2 23 1121
50% 2 23 1187
40% 2 23 1204
30% 2 23 1182
Entity #19: Chains: S - 30S Ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 22 781
95% 2 22 1094
90% 2 22 1112
70% 2 22 1152
50% 20 266 37
40% 20 266 50
30% 20 266 73
Entity #2: Chains: B - 30S Ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 189 24
95% 18 190 38
90% 18 190 42
70% 18 190 52
50% 18 190 91
40% 19 263 54
30% 19 263 75
Entity #20: Chains: T - 30S Ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 140 42
95% 18 188 46
90% 18 188 49
70% 18 188 59
50% 18 188 93
40% 18 188 118
30% 18 188 141
Entity #21: Chains: U - 30S Ribosomal protein THX protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 179 34
95% 18 179 54
90% 18 179 56
70% 18 179 69
50% 18 179 105
40% 18 179 132
30% 18 179 151
Entity #22: Chains: X - Fragment of messenger RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S Ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 22 776
95% 2 22 1085
90% 2 22 1104
70% 2 22 1139
50% 3 56 424
40% 3 57 450
30% 3 57 463
Entity #4: Chains: D - 30S Ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 182 31
95% 18 190 39
90% 18 190 43
70% 18 190 53
50% 19 263 39
40% 19 264 52
30% 19 264 74
Entity #5: Chains: E - 30S Ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 189 25
95% 18 189 42
90% 18 189 45
70% 18 189 55
50% 20 267 36
40% 20 267 49
30% 20 269 72
Entity #6: Chains: F - 30S Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 194 19
95% 25 200 29
90% 25 200 30
70% 25 200 45
50% 25 200 86
40% 25 200 108
30% 28 237 93
Entity #7: Chains: G - 30S Ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 193 20
95% 19 194 36
90% 19 194 38
70% 19 194 50
50% 21 235 56
40% 21 236 73
30% 21 236 96
Entity #8: Chains: H - 30S Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 189 22
95% 19 189 40
90% 19 193 39
70% 19 193 51
50% 21 269 35
40% 22 271 46
30% 26 321 44
Entity #9: Chains: I - 30S Ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 87 159
95% 18 189 44
90% 18 189 47
70% 18 189 57
50% 19 263 40
40% 19 263 55
30% 22 312 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.