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Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin
Sequence Clustering and Redundancy Reduction Results
4KHP
Sequence Clusters for the Sequence Entities in PDB 4KHP
Entity #1: Chains: A - 16S Ribosomal RNA rna, length: 1506 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S Ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 204 25
95% 24 205 45
90% 24 205 47
70% 24 205 57
50% 32 290 35
40% 32 290 45
30% 35 342 46
Entity #11: Chains: K - 30S Ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 206 23
95% 24 206 41
90% 24 206 43
70% 24 206 52
50% 26 284 41
40% 31 343 34
30% 31 344 45
Entity #12: Chains: L - 30S Ribosomal protein S12 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 172 33
95% 24 213 31
90% 24 213 34
70% 26 295 24
50% 26 296 34
40% 26 296 44
30% 26 296 67
Entity #13: Chains: M - 30S Ribosomal protein S13 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 207 20
95% 24 207 39
90% 24 207 41
70% 24 207 50
50% 26 289 39
40% 26 289 49
30% 29 343 48
Entity #14: Chains: N - 30S Ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 205 24
95% 24 205 46
90% 24 205 48
70% 24 206 55
50% 24 206 85
40% 24 206 110
30% 24 206 129
Entity #15: Chains: O - 30S Ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 209 18
95% 25 214 29
90% 25 214 32
70% 25 214 42
50% 30 297 33
40% 30 298 43
30% 30 298 65
Entity #16: Chains: P - 30S Ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 201 29
95% 24 206 43
90% 24 206 45
70% 24 206 54
50% 24 206 84
40% 24 207 109
30% 26 287 74
Entity #17: Chains: Q - 30S Ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 120 62
95% 24 200 47
90% 24 204 49
70% 24 204 58
50% 24 204 87
40% 24 204 112
30% 24 204 131
Entity #18: Chains: R - 30S Ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 22 868
95% 2 28 911
90% 2 28 933
70% 2 28 964
50% 2 28 1005
40% 2 28 1032
30% 2 28 1014
Entity #19: Chains: S - 30S Ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 209 17
95% 25 209 33
90% 25 209 37
70% 25 209 46
50% 27 287 38
40% 27 287 48
30% 27 287 71
Entity #2: Chains: B - 30S Ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 206 21
95% 24 207 35
90% 24 207 38
70% 24 207 47
50% 26 283 43
40% 26 284 51
30% 26 284 73
Entity #20: Chains: T - 30S Ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 156 52
95% 24 205 44
90% 24 205 46
70% 24 205 56
50% 24 205 86
40% 24 205 111
30% 24 205 130
Entity #21: Chains: U - 30S Ribosomal protein THX protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 196 32
95% 24 196 51
90% 24 196 53
70% 24 196 64
50% 24 196 97
40% 24 196 120
30% 24 196 143
Entity #22: Chains: X - Fragment of messenger RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S Ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 26 683
95% 2 26 947
90% 2 26 970
70% 2 26 1002
50% 4 62 398
40% 4 63 419
30% 4 63 428
Entity #4: Chains: D - 30S Ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 199 30
95% 24 207 37
90% 24 207 40
70% 24 207 49
50% 26 284 40
40% 26 285 50
30% 26 285 72
Entity #5: Chains: E - 30S Ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 206 22
95% 24 206 40
90% 24 206 42
70% 24 206 51
50% 27 288 37
40% 27 288 47
30% 27 290 69
Entity #6: Chains: F - 30S Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 211 15
95% 31 217 28
90% 31 217 31
70% 31 217 41
50% 31 217 78
40% 31 217 102
30% 35 256 85
Entity #7: Chains: G - 30S Ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 210 16
95% 25 211 32
90% 25 211 35
70% 25 211 44
50% 28 254 51
40% 28 255 67
30% 28 255 88
Entity #8: Chains: H - 30S Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 206 19
95% 25 206 38
90% 25 210 36
70% 25 210 45
50% 28 290 36
40% 29 292 46
30% 33 347 44
Entity #9: Chains: I - 30S Ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 90 160
95% 24 206 42
90% 24 206 44
70% 24 206 53
50% 26 284 42
40% 26 284 52
30% 29 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.