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Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin
Sequence Clustering and Redundancy Reduction Results
4KHP
Sequence Clusters for the Sequence Entities in PDB 4KHP
Entity #1: Chains: A - 16S Ribosomal RNA rna, length: 1506 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S Ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 197 29
95% 23 198 45
90% 23 198 47
70% 23 198 59
50% 31 282 35
40% 31 282 45
30% 34 333 46
Entity #11: Chains: K - 30S Ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 199 25
95% 23 199 40
90% 23 199 42
70% 23 199 54
50% 25 276 42
40% 30 333 35
30% 30 333 45
Entity #12: Chains: L - 30S Ribosomal protein S12 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 166 36
95% 23 206 31
90% 23 206 33
70% 25 288 24
50% 25 288 34
40% 25 288 44
30% 25 288 69
Entity #13: Chains: M - 30S Ribosomal protein S13 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 200 22
95% 23 200 38
90% 23 200 40
70% 23 200 51
50% 25 281 39
40% 25 281 50
30% 28 334 49
Entity #14: Chains: N - 30S Ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 198 26
95% 23 198 46
90% 23 198 48
70% 23 198 60
50% 23 198 92
40% 23 198 114
30% 23 198 138
Entity #15: Chains: O - 30S Ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 202 20
95% 24 207 30
90% 24 207 32
70% 24 207 43
50% 29 289 33
40% 29 289 43
30% 29 289 67
Entity #16: Chains: P - 30S Ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 194 30
95% 23 199 42
90% 23 199 44
70% 23 199 56
50% 23 199 89
40% 23 199 112
30% 25 279 76
Entity #17: Chains: Q - 30S Ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 113 66
95% 23 193 50
90% 23 197 49
70% 23 197 61
50% 23 197 93
40% 23 197 116
30% 23 197 139
Entity #18: Chains: R - 30S Ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 21 924
95% 2 27 941
90% 2 27 965
70% 2 27 999
50% 2 27 1040
40% 2 27 1066
30% 2 27 1041
Entity #19: Chains: S - 30S Ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 202 19
95% 24 202 33
90% 24 202 36
70% 24 202 47
50% 26 279 38
40% 26 279 49
30% 26 279 73
Entity #2: Chains: B - 30S Ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 199 23
95% 23 200 35
90% 23 200 38
70% 23 200 48
50% 23 200 88
40% 25 276 53
30% 25 276 75
Entity #20: Chains: T - 30S Ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 149 54
95% 23 198 44
90% 23 198 46
70% 23 198 58
50% 23 198 91
40% 23 198 113
30% 23 198 137
Entity #21: Chains: U - 30S Ribosomal protein THX protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 189 32
95% 23 189 52
90% 23 189 55
70% 23 189 67
50% 23 189 112
40% 23 189 135
30% 23 189 153
Entity #22: Chains: X - Fragment of messenger RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S Ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 25 713
95% 2 25 998
90% 2 25 1017
70% 2 25 1042
50% 4 60 406
40% 4 61 427
30% 4 61 433
Entity #4: Chains: D - 30S Ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 192 31
95% 23 200 36
90% 23 200 39
70% 23 200 49
50% 25 276 40
40% 25 277 51
30% 25 277 74
Entity #5: Chains: E - 30S Ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 199 24
95% 23 199 39
90% 23 199 41
70% 23 199 52
50% 26 280 37
40% 26 280 48
30% 26 282 72
Entity #6: Chains: F - 30S Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 204 17
95% 30 210 29
90% 30 210 31
70% 30 210 42
50% 30 210 82
40% 30 210 107
30% 34 248 87
Entity #7: Chains: G - 30S Ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 203 18
95% 24 204 32
90% 24 204 34
70% 24 204 44
50% 27 246 54
40% 27 247 71
30% 27 247 94
Entity #8: Chains: H - 30S Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 199 21
95% 24 199 37
90% 24 203 35
70% 24 203 45
50% 27 282 36
40% 28 284 46
30% 32 338 44
Entity #9: Chains: I - 30S Ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 90 158
95% 23 199 41
90% 23 199 43
70% 23 199 55
50% 25 276 41
40% 25 276 54
30% 28 329 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.