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Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin
Sequence Clustering and Redundancy Reduction Results
4KHP
Sequence Clusters for the Sequence Entities in PDB 4KHP
Entity #1: Chains: A - 16S Ribosomal RNA rna, length: 1506 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S Ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 218 36
95% 27 219 51
90% 27 219 55
70% 27 219 67
50% 35 306 33
40% 35 306 43
30% 38 360 42
Entity #11: Chains: K - 30S Ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 220 34
95% 27 220 47
90% 27 220 51
70% 27 220 62
50% 29 300 42
40% 34 361 30
30% 34 362 41
Entity #12: Chains: L - 30S Ribosomal protein S12 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 183 46
95% 27 227 38
90% 27 227 42
70% 29 311 23
50% 29 312 32
40% 29 312 42
30% 29 312 57
Entity #13: Chains: M - 30S Ribosomal protein S13 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 221 32
95% 27 221 45
90% 27 221 49
70% 27 221 60
50% 29 305 38
40% 29 305 50
30% 32 361 47
Entity #14: Chains: N - 30S Ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 219 35
95% 27 219 52
90% 27 219 56
70% 27 220 65
50% 27 220 92
40% 27 220 113
30% 27 220 126
Entity #15: Chains: O - 30S Ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 223 29
95% 28 228 26
90% 28 228 31
70% 28 228 43
50% 33 313 29
40% 33 314 40
30% 33 314 55
Entity #16: Chains: P - 30S Ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 215 37
95% 27 220 49
90% 27 220 53
70% 27 220 64
50% 27 220 91
40% 27 221 112
30% 29 303 70
Entity #17: Chains: Q - 30S Ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 134 59
95% 27 214 56
90% 27 218 58
70% 27 218 69
50% 27 218 94
40% 27 218 116
30% 27 218 128
Entity #18: Chains: R - 30S Ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 22 883
95% 2 28 925
90% 2 28 948
70% 2 28 981
50% 2 28 1026
40% 2 28 1052
30% 2 28 1031
Entity #19: Chains: S - 30S Ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 223 27
95% 28 223 41
90% 28 223 46
70% 28 223 57
50% 30 303 37
40% 30 303 48
30% 30 303 67
Entity #2: Chains: B - 30S Ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 220 30
95% 27 221 42
90% 27 221 47
70% 27 221 58
50% 29 299 41
40% 29 300 51
30% 29 300 69
Entity #20: Chains: T - 30S Ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 170 49
95% 27 219 50
90% 27 219 54
70% 27 219 66
50% 27 219 93
40% 27 219 114
30% 27 219 127
Entity #21: Chains: U - 30S Ribosomal protein THX protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 210 40
95% 27 210 59
90% 27 210 62
70% 27 210 73
50% 27 210 98
40% 27 210 120
30% 27 210 133
Entity #22: Chains: X - Fragment of messenger RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S Ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 26 694
95% 2 26 964
90% 2 26 989
70% 2 26 1020
50% 4 62 402
40% 4 63 424
30% 4 63 433
Entity #4: Chains: D - 30S Ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 213 38
95% 27 221 43
90% 27 221 48
70% 27 221 59
50% 29 300 39
40% 29 301 49
30% 29 301 68
Entity #5: Chains: E - 30S Ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 220 33
95% 27 220 46
90% 27 220 50
70% 27 220 61
50% 30 304 36
40% 30 304 47
30% 30 306 65
Entity #6: Chains: F - 30S Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 225 24
95% 34 231 24
90% 34 231 29
70% 34 231 41
50% 34 231 83
40% 34 231 105
30% 38 270 79
Entity #7: Chains: G - 30S Ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 224 26
95% 28 225 40
90% 28 225 44
70% 28 225 55
50% 31 268 51
40% 31 269 62
30% 31 269 81
Entity #8: Chains: H - 30S Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 220 31
95% 28 220 44
90% 28 224 45
70% 28 224 56
50% 31 306 34
40% 32 308 44
30% 36 365 40
Entity #9: Chains: I - 30S Ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 90 167
95% 27 220 48
90% 27 220 52
70% 27 220 63
50% 29 300 43
40% 29 300 52
30% 32 356 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.