Sequence Similarity Clusters for the Entities in PDB 4KHP

Entity #1 | Chains: A
16S Ribosomal RNA rna, length: 1506 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S Ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 252 35
95 % 37 253 48
90 % 37 253 53
70 % 37 253 63
50 % 46 348 28
40 % 46 348 38
30 % 49 420 36
Entity #11 | Chains: K
30S Ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 254 33
95 % 37 254 44
90 % 37 254 49
70 % 37 254 58
50 % 40 342 36
40 % 45 421 22
30 % 45 422 35
Entity #12 | Chains: L
30S Ribosomal protein S12 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 206 45
95 % 37 261 35
90 % 37 261 39
70 % 40 353 23
50 % 40 354 27
40 % 40 354 37
30 % 40 354 56
Entity #13 | Chains: M
30S Ribosomal protein S13 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 255 30
95 % 37 255 41
90 % 37 255 46
70 % 37 255 55
50 % 40 347 33
40 % 40 347 45
30 % 43 421 41
Entity #14 | Chains: N
30S Ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 253 34
95 % 37 253 49
90 % 37 253 54
70 % 37 254 61
50 % 37 254 86
40 % 37 254 106
30 % 37 254 119
Entity #15 | Chains: O
30S Ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 257 27
95 % 38 262 34
90 % 38 262 38
70 % 38 262 49
50 % 44 355 26
40 % 44 356 36
30 % 44 356 55
Entity #16 | Chains: P
30S Ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 249 36
95 % 37 254 46
90 % 37 254 51
70 % 37 254 60
50 % 37 254 85
40 % 37 255 105
30 % 40 345 63
Entity #17 | Chains: Q
30S Ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 161 57
95 % 37 248 50
90 % 37 252 55
70 % 37 252 64
50 % 37 252 88
40 % 37 252 108
30 % 37 252 121
Entity #18 | Chains: R
30S Ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 30 691
95 % 4 37 709
90 % 4 37 751
70 % 4 37 793
50 % 4 37 841
40 % 4 37 875
30 % 4 37 865
Entity #19 | Chains: S
30S Ribosomal protein S19 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 257 26
95 % 38 257 37
90 % 38 257 43
70 % 38 257 52
50 % 41 345 31
40 % 41 345 42
30 % 41 345 60
Entity #2 | Chains: B
30S Ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 254 28
95 % 37 255 38
90 % 37 255 44
70 % 37 255 53
50 % 40 341 35
40 % 40 342 47
30 % 40 342 62
Entity #20 | Chains: T
30S Ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 202 47
95 % 37 253 47
90 % 37 253 52
70 % 37 253 62
50 % 37 253 87
40 % 37 253 107
30 % 37 253 120
Entity #21 | Chains: U
30S Ribosomal protein THX protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 244 38
95 % 37 244 54
90 % 37 244 57
70 % 37 244 68
50 % 37 244 92
40 % 37 244 114
30 % 37 244 128
Entity #22 | Chains: X
Fragment of messenger RNA rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S Ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 36 522
95 % 4 36 743
90 % 4 36 784
70 % 4 36 828
50 % 6 72 381
40 % 6 73 400
30 % 6 73 408
Entity #4 | Chains: D
30S Ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 247 37
95 % 37 255 39
90 % 37 255 45
70 % 37 255 54
50 % 40 342 34
40 % 40 343 44
30 % 40 343 61
Entity #5 | Chains: E
30S Ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 254 32
95 % 37 254 43
90 % 37 254 48
70 % 37 254 57
50 % 41 346 30
40 % 41 346 41
30 % 41 348 57
Entity #6 | Chains: F
30S Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 259 24
95 % 44 265 33
90 % 44 265 36
70 % 44 265 44
50 % 44 265 82
40 % 44 265 100
30 % 48 304 78
Entity #7 | Chains: G
30S Ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 258 25
95 % 38 259 36
90 % 38 259 41
70 % 38 259 50
50 % 41 304 51
40 % 41 305 63
30 % 41 305 87
Entity #8 | Chains: H
30S Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 254 29
95 % 38 254 40
90 % 38 258 42
70 % 38 258 51
50 % 42 348 29
40 % 43 350 39
30 % 47 425 33
Entity #9 | Chains: I
30S Ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 91 192
95 % 37 254 45
90 % 37 254 50
70 % 37 254 59
50 % 40 342 37
40 % 40 342 48
30 % 43 416 42

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.