Sequence Similarity Clusters for the Entities in PDB 4KHP

Entity #1 | Chains: A
16S Ribosomal RNA rna, length: 1506 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S Ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 269 40
95 % 38 270 54 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 38 270 58
70 % 38 270 69
50 % 51 428 26
40 % 51 428 38
30 % 55 536 32
Entity #11 | Chains: K
30S Ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 271 36
95 % 38 271 50 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 38 271 54
70 % 38 271 65
50 % 45 422 32
40 % 51 547 19
30 % 51 547 31
Entity #12 | Chains: L
30S Ribosomal protein S12 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 217 53
95 % 38 278 39 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 38 278 44
70 % 45 426 19
50 % 45 439 24
40 % 45 439 36
30 % 45 439 57
Entity #13 | Chains: M
30S Ribosomal protein S13 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 272 33
95 % 38 272 47 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 38 272 51
70 % 38 272 63
50 % 45 426 31
40 % 45 426 44
30 % 49 536 35
Entity #14 | Chains: N
30S Ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 270 37
95 % 38 270 55 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 38 270 59
70 % 38 283 54
50 % 38 283 91
40 % 38 283 113
30 % 38 283 125
Entity #15 | Chains: O
30S Ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 274 30
95 % 39 279 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 39 279 43
70 % 39 279 55
50 % 49 435 25
40 % 49 440 35
30 % 49 440 56
Entity #16 | Chains: P
30S Ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 266 41
95 % 38 271 52 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 38 271 56
70 % 38 271 67
50 % 38 281 92
40 % 38 281 114
30 % 45 419 64
Entity #17 | Chains: Q
30S Ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 178 59
95 % 38 265 56
90 % 38 269 60
70 % 38 269 70
50 % 38 269 95
40 % 38 269 117
30 % 38 269 128
Entity #18 | Chains: R
30S Ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 30 818
95 % 4 37 872
90 % 4 37 906
70 % 4 37 943
50 % 4 37 997
40 % 4 37 1022
30 % 4 37 999
Entity #19 | Chains: S
30S Ribosomal protein S19 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 274 29
95 % 39 274 43 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 39 274 48
70 % 39 274 59
50 % 46 428 28
40 % 46 431 40
30 % 46 431 58
Entity #2 | Chains: B
30S Ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 271 31
95 % 38 272 44 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 38 272 49
70 % 38 272 60
50 % 45 415 34
40 % 45 420 45
30 % 45 420 62
Entity #20 | Chains: T
30S Ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 219 52
95 % 38 270 53 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 38 270 57
70 % 38 270 68
50 % 38 270 94
40 % 38 270 116
30 % 38 270 127
Entity #21 | Chains: U
30S Ribosomal protein THX protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 261 43
95 % 38 261 59 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 38 261 63
70 % 38 261 74
50 % 38 261 100
40 % 38 261 123
30 % 38 261 135
Entity #22 | Chains: X
Fragment of messenger RNA rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S Ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 36 669
95 % 4 36 908 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 4 36 942
70 % 4 36 977
50 % 10 106 329
40 % 10 111 331
30 % 10 111 339
Entity #4 | Chains: D
30S Ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 264 42
95 % 38 272 45 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 38 272 50
70 % 38 272 61
50 % 45 423 29
40 % 45 428 42
30 % 45 428 59
Entity #5 | Chains: E
30S Ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 271 35
95 % 38 271 49
90 % 38 271 53
70 % 38 271 64
50 % 46 423 30
40 % 46 423 43
30 % 46 425 61
Entity #6 | Chains: F
30S Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 276 27
95 % 45 282 37 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 45 282 42
70 % 45 282 53
50 % 45 282 90
40 % 45 282 112
30 % 53 362 94
Entity #7 | Chains: G
30S Ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 275 28
95 % 39 276 42 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 39 276 46
70 % 39 276 57
50 % 46 363 66
40 % 46 368 82
30 % 46 368 96
Entity #8 | Chains: H
30S Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 271 32
95 % 39 271 46 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 39 275 47
70 % 39 275 58
50 % 47 428 27
40 % 48 434 37
30 % 53 552 30
Entity #9 | Chains: I
30S Ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 91 224
95 % 38 271 51 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 38 271 55
70 % 38 271 66
50 % 45 417 33
40 % 45 417 46
30 % 49 536 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.