Sequence Similarity Clusters for the Entities in PDB 4KHP

Entity #1 | Chains: A
16S Ribosomal RNA rna, length: 1506 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S Ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 292 40
95 % 44 292 49 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 44 292 54
70 % 44 292 65
50 % 57 462 25
40 % 61 577 20
30 % 61 579 33
Entity #11 | Chains: K
30S Ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 293 38
95 % 44 293 46 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 44 293 50
70 % 44 293 63
50 % 51 456 32
40 % 57 583 19
30 % 57 583 32
Entity #12 | Chains: L
30S Ribosomal protein S12 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 31 962
95 % 44 300 37 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 44 300 41
70 % 51 470 15
50 % 51 473 24
40 % 51 473 39
30 % 51 473 57
Entity #13 | Chains: M
30S Ribosomal protein S13 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 294 35
95 % 44 294 42 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 44 294 47
70 % 44 294 60
50 % 51 460 30
40 % 51 460 43
30 % 55 580 37
Entity #14 | Chains: N
30S Ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 292 39
95 % 44 292 48 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 44 292 53
70 % 44 296 56
50 % 44 305 91
40 % 44 305 112
30 % 44 305 127
Entity #15 | Chains: O
30S Ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 298 28
95 % 45 301 36 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 45 301 40
70 % 45 301 51
50 % 55 468 26
40 % 55 473 38
30 % 55 473 56
Entity #16 | Chains: P
30S Ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 288 43
95 % 44 293 44 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 44 293 48
70 % 44 293 61
50 % 44 303 92
40 % 51 458 45
30 % 51 458 61
Entity #17 | Chains: Q
30S Ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 264 46
95 % 44 290 51
90 % 44 290 56
70 % 44 290 68
50 % 44 290 97
40 % 44 290 119
30 % 44 290 133
Entity #18 | Chains: R
30S Ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 48 561
95 % 4 48 696
90 % 4 48 723
70 % 4 48 768
50 % 4 48 832
40 % 4 48 864
30 % 4 48 857
Entity #19 | Chains: S
30S Ribosomal protein S19 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 296 31
95 % 45 296 39 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 45 296 44
70 % 45 296 55
50 % 52 462 28
40 % 52 465 41
30 % 52 465 58
Entity #2 | Chains: B
30S Ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 293 34
95 % 44 294 41 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 44 294 46
70 % 44 294 59
50 % 51 446 36
40 % 51 452 48
30 % 51 452 64
Entity #20 | Chains: T
30S Ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 39 772
95 % 44 292 50 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 44 292 55
70 % 44 292 66
50 % 44 292 94
40 % 44 292 117
30 % 44 292 132
Entity #21 | Chains: U
30S Ribosomal protein THX protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 283 45
95 % 44 283 55 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 44 283 60
70 % 44 283 72
50 % 44 283 100
40 % 44 283 123
30 % 44 283 135
Entity #22 | Chains: X
Fragment of messenger RNA rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S Ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 47 598
95 % 4 47 733 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 4 47 758
70 % 4 47 807
50 % 10 127 295
40 % 10 133 306
30 % 10 133 320
Entity #4 | Chains: D
30S Ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 294 33
95 % 44 294 40 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 44 294 45
70 % 44 294 57
50 % 51 456 29
40 % 51 462 42
30 % 51 462 59
Entity #5 | Chains: E
30S Ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 293 37
95 % 44 293 45
90 % 44 293 49
70 % 44 293 62
50 % 52 457 31
40 % 52 457 44
30 % 52 459 60
Entity #6 | Chains: F
30S Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 298 29
95 % 51 304 35 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 51 304 39
70 % 51 304 50
50 % 51 304 90
40 % 51 304 111
30 % 59 393 86
Entity #7 | Chains: G
30S Ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 298 30
95 % 45 298 38 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 45 298 42
70 % 45 298 53
50 % 52 395 58
40 % 52 401 67
30 % 52 401 83
Entity #8 | Chains: H
30S Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 293 36
95 % 45 293 43 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 45 297 43
70 % 45 297 54
50 % 53 461 27
40 % 59 596 18
30 % 59 596 31
Entity #9 | Chains: I
30S Ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 94 239
95 % 44 293 47 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 44 293 51
70 % 44 293 64
50 % 51 450 35
40 % 51 451 49
30 % 55 580 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures