Sequence Similarity Clusters for the Entities in PDB 4KHP

Entity #1 | Chains: A
16S Ribosomal RNA rna, length: 1506 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S Ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 268 39
95 % 37 269 53 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 37 269 58
70 % 37 269 69
50 % 50 419 26
40 % 50 419 38
30 % 54 524 31
Entity #11 | Chains: K
30S Ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 270 35
95 % 37 270 49 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 37 270 54
70 % 37 270 65
50 % 44 413 32
40 % 50 524 19
30 % 50 524 32
Entity #12 | Chains: L
30S Ribosomal protein S12 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 217 51
95 % 37 277 40 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 37 277 45
70 % 44 420 20
50 % 44 430 24
40 % 44 430 36
30 % 44 430 55
Entity #13 | Chains: M
30S Ribosomal protein S13 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 271 33
95 % 37 271 47 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 37 271 52
70 % 37 271 63
50 % 44 417 31
40 % 44 417 45
30 % 48 522 34
Entity #14 | Chains: N
30S Ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 269 38
95 % 37 269 54 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 37 269 59
70 % 37 277 56
50 % 37 277 91
40 % 37 277 115
30 % 37 277 123
Entity #15 | Chains: O
30S Ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 273 30
95 % 38 278 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 38 278 43
70 % 38 278 54
50 % 48 426 25
40 % 48 431 35
30 % 48 431 54
Entity #16 | Chains: P
30S Ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 265 41
95 % 37 270 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 37 270 56
70 % 37 270 67
50 % 37 277 90
40 % 37 277 114
30 % 44 412 63
Entity #17 | Chains: Q
30S Ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 177 58
95 % 37 264 56 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 37 268 60
70 % 37 268 70
50 % 37 268 94
40 % 37 268 117
30 % 37 268 128
Entity #18 | Chains: R
30S Ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 30 795
95 % 4 37 853 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 4 37 885
70 % 4 37 920
50 % 4 37 971
40 % 4 37 991
30 % 4 37 966
Entity #19 | Chains: S
30S Ribosomal protein S19 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 273 29
95 % 38 273 42 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 38 273 48
70 % 38 273 59
50 % 45 419 28
40 % 45 422 39
30 % 45 422 56
Entity #2 | Chains: B
30S Ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 270 31
95 % 37 271 44 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.7
PDBFlex
90 % 37 271 50
70 % 37 271 61
50 % 44 408 36
40 % 44 413 44
30 % 44 413 62
Entity #20 | Chains: T
30S Ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 218 50
95 % 37 269 52 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 37 269 57
70 % 37 269 68
50 % 37 269 93
40 % 37 269 116
30 % 37 269 127
Entity #21 | Chains: U
30S Ribosomal protein THX protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 260 43
95 % 37 260 59 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 37 260 63
70 % 37 260 75
50 % 37 260 98
40 % 37 260 121
30 % 37 260 132
Entity #22 | Chains: X
Fragment of messenger RNA rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S Ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 36 653
95 % 4 36 888 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 4 36 923
70 % 4 36 955
50 % 10 100 330
40 % 10 105 338
30 % 10 105 347
Entity #4 | Chains: D
30S Ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 263 42
95 % 37 271 45
90 % 37 271 51
70 % 37 271 62
50 % 44 414 30
40 % 44 419 40
30 % 44 419 57
Entity #5 | Chains: E
30S Ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 270 34
95 % 37 270 48 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 37 270 53
70 % 37 270 64
50 % 45 416 29
40 % 45 416 41
30 % 45 418 60
Entity #6 | Chains: F
30S Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 275 27
95 % 44 281 37 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 44 281 41
70 % 44 281 52
50 % 44 281 88
40 % 44 281 110
30 % 52 353 93
Entity #7 | Chains: G
30S Ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 274 28
95 % 38 275 41 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 38 275 46
70 % 38 275 57
50 % 45 354 68
40 % 45 359 85
30 % 45 359 95
Entity #8 | Chains: H
30S Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 270 32
95 % 38 270 46 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 38 274 47
70 % 38 274 58
50 % 46 419 27
40 % 47 425 37
30 % 52 537 30
Entity #9 | Chains: I
30S Ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 91 217
95 % 37 270 50 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 37 270 55
70 % 37 270 66
50 % 44 410 35
40 % 44 410 48
30 % 48 519 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.