Sequence Similarity Clusters for the Entities in PDB 4KHP

Entity #1 | Chains: A
16S Ribosomal RNA rna, length: 1506 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S Ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 270 38
95 % 38 271 53 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 38 271 58
70 % 38 271 70
50 % 51 432 28
40 % 51 432 41
30 % 55 545 34
Entity #11 | Chains: K
30S Ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 272 35
95 % 38 272 49 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 38 272 54
70 % 38 272 66
50 % 45 426 34
40 % 51 557 19
30 % 51 557 33
Entity #12 | Chains: L
30S Ribosomal protein S12 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 218 54
95 % 38 279 39 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 38 279 44
70 % 45 430 20
50 % 45 443 26
40 % 45 443 39
30 % 45 443 58
Entity #13 | Chains: M
30S Ribosomal protein S13 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 273 33
95 % 38 273 47 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 38 273 51
70 % 38 273 62
50 % 45 430 33
40 % 45 430 45
30 % 49 546 37
Entity #14 | Chains: N
30S Ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 271 36
95 % 38 271 55 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 38 271 60
70 % 38 284 54
50 % 38 284 93
40 % 38 284 116
30 % 38 284 126
Entity #15 | Chains: O
30S Ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 275 30
95 % 39 280 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 39 280 43
70 % 39 280 55
50 % 49 439 27
40 % 49 444 37
30 % 49 444 57
Entity #16 | Chains: P
30S Ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 267 41
95 % 38 272 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 38 272 56
70 % 38 272 68
50 % 38 282 94
40 % 38 282 117
30 % 45 423 65
Entity #17 | Chains: Q
30S Ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 179 61
95 % 38 266 56
90 % 38 270 61
70 % 38 270 71
50 % 38 270 98
40 % 38 270 121
30 % 38 270 129
Entity #18 | Chains: R
30S Ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 30 829
95 % 4 37 897
90 % 4 37 930
70 % 4 37 962
50 % 4 37 1010
40 % 4 37 1030
30 % 4 37 1008
Entity #19 | Chains: S
30S Ribosomal protein S19 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 275 29
95 % 39 275 43 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 39 275 48
70 % 39 275 59
50 % 46 432 30
40 % 46 435 42
30 % 46 435 59
Entity #2 | Chains: B
30S Ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 272 31
95 % 38 273 44 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 38 273 49
70 % 38 273 60
50 % 45 419 36
40 % 45 424 46
30 % 45 424 64
Entity #20 | Chains: T
30S Ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 220 53
95 % 38 271 52 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 38 271 57
70 % 38 271 69
50 % 38 271 97
40 % 38 271 119
30 % 38 271 128
Entity #21 | Chains: U
30S Ribosomal protein THX protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 262 43
95 % 38 262 59 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 38 262 63
70 % 38 262 76
50 % 38 262 103
40 % 38 262 126
30 % 38 262 134
Entity #22 | Chains: X
Fragment of messenger RNA rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S Ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 36 683
95 % 4 36 928 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 4 36 961
70 % 4 36 993
50 % 10 109 338
40 % 10 114 338
30 % 10 114 349
Entity #4 | Chains: D
30S Ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 265 42
95 % 38 273 45 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 38 273 50
70 % 38 273 61
50 % 45 427 31
40 % 45 432 43
30 % 45 432 60
Entity #5 | Chains: E
30S Ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 272 34
95 % 38 272 48
90 % 38 272 53
70 % 38 272 64
50 % 46 427 32
40 % 46 427 44
30 % 46 429 63
Entity #6 | Chains: F
30S Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 277 27
95 % 45 283 37 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 45 283 42
70 % 45 283 52
50 % 45 283 91
40 % 45 283 115
30 % 53 366 94
Entity #7 | Chains: G
30S Ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 276 28
95 % 39 277 40 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 39 277 45
70 % 39 277 56
50 % 46 367 67
40 % 46 372 84
30 % 46 372 97
Entity #8 | Chains: H
30S Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 272 32
95 % 39 272 46 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 39 276 46
70 % 39 276 57
50 % 47 432 29
40 % 48 438 40
30 % 53 562 32
Entity #9 | Chains: I
30S Ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 91 232
95 % 38 272 50 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 38 272 55
70 % 38 272 67
50 % 45 421 35
40 % 45 421 47
30 % 49 546 36

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures