Sequence Similarity Clusters for the Entities in PDB 4KHP

Entity #1 | Chains: A
16S Ribosomal RNA rna, length: 1506 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S Ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 267 39
95 % 37 268 54
90 % 37 268 57
70 % 37 268 69
50 % 50 400 26
40 % 50 400 37
30 % 53 500 32
Entity #11 | Chains: K
30S Ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 269 36
95 % 37 269 50
90 % 37 269 53
70 % 37 269 64
50 % 44 393 35
40 % 49 499 19
30 % 49 499 33
Entity #12 | Chains: L
30S Ribosomal protein S12 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 217 50
95 % 37 276 40
90 % 37 276 44
70 % 44 406 22
50 % 44 411 25
40 % 44 411 35
30 % 44 411 55
Entity #13 | Chains: M
30S Ribosomal protein S13 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 270 34
95 % 37 270 47
90 % 37 270 51
70 % 37 270 61
50 % 44 398 33
40 % 44 398 46
30 % 47 500 36
Entity #14 | Chains: N
30S Ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 268 38
95 % 37 268 55
90 % 37 268 58
70 % 37 270 62
50 % 37 270 90
40 % 37 270 112
30 % 37 270 124
Entity #15 | Chains: O
30S Ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 272 30
95 % 38 277 39
90 % 38 277 43
70 % 38 277 55
50 % 48 406 27
40 % 48 409 36
30 % 48 409 56
Entity #16 | Chains: P
30S Ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 264 40
95 % 37 269 52
90 % 37 269 55
70 % 37 269 66
50 % 37 271 89
40 % 37 271 110
30 % 44 394 63
Entity #17 | Chains: Q
30S Ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 176 58
95 % 37 263 57
90 % 37 267 59
70 % 37 267 70
50 % 37 267 94
40 % 37 267 115
30 % 37 267 127
Entity #18 | Chains: R
30S Ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 30 773
95 % 4 37 835
90 % 4 37 865
70 % 4 37 902
50 % 4 37 948
40 % 4 37 967
30 % 4 37 946
Entity #19 | Chains: S
30S Ribosomal protein S19 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 272 29
95 % 38 272 43
90 % 38 272 48
70 % 38 272 58
50 % 45 398 30
40 % 45 401 40
30 % 45 401 58
Entity #2 | Chains: B
30S Ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 269 32
95 % 37 270 44
90 % 37 270 49
70 % 37 270 59
50 % 44 392 34
40 % 44 395 45
30 % 44 395 62
Entity #20 | Chains: T
30S Ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 217 51
95 % 37 268 53
90 % 37 268 56
70 % 37 268 68
50 % 37 268 92
40 % 37 268 113
30 % 37 268 125
Entity #21 | Chains: U
30S Ribosomal protein THX protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 259 43
95 % 37 259 59
90 % 37 259 63
70 % 37 259 75
50 % 37 259 97
40 % 37 259 120
30 % 37 259 130
Entity #22 | Chains: X
Fragment of messenger RNA rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S Ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 36 641
95 % 4 36 869
90 % 4 36 901
70 % 4 36 930
50 % 10 87 372
40 % 10 90 383
30 % 10 90 384
Entity #4 | Chains: D
30S Ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 262 41
95 % 37 270 45
90 % 37 270 50
70 % 37 270 60
50 % 44 394 32
40 % 44 397 42
30 % 44 397 61
Entity #5 | Chains: E
30S Ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 269 35
95 % 37 269 49
90 % 37 269 52
70 % 37 269 63
50 % 45 398 31
40 % 45 398 43
30 % 45 400 59
Entity #6 | Chains: F
30S Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 274 27
95 % 44 280 36
90 % 44 280 41
70 % 44 280 52
50 % 44 280 87
40 % 44 280 106
30 % 52 334 90
Entity #7 | Chains: G
30S Ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 273 28
95 % 38 274 41
90 % 38 274 45
70 % 38 274 56
50 % 45 338 71
40 % 45 341 79
30 % 45 341 93
Entity #8 | Chains: H
30S Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 269 33
95 % 38 269 46
90 % 38 273 46
70 % 38 273 57
50 % 46 399 29
40 % 47 403 38
30 % 51 512 30
Entity #9 | Chains: I
30S Ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 91 211
95 % 37 269 51
90 % 37 269 54
70 % 37 269 65
50 % 44 393 36
40 % 44 393 47
30 % 47 499 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.