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Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin
Sequence Clustering and Redundancy Reduction Results
4KHP
Sequence Clusters for the Sequence Entities in PDB 4KHP
Entity #1: Chains: A - 16S Ribosomal RNA rna, length: 1506 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S Ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 265 27
95% 25 267 47
90% 25 267 49
70% 25 267 59
50% 33 382 34
40% 33 382 45
30% 33 387 65
Entity #11: Chains: K - 30S Ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 268 25
95% 25 268 43
90% 25 268 45
70% 25 268 55
50% 27 376 41
40% 31 416 40
30% 31 416 52
Entity #12: Chains: L - 30S Ribosomal protein S12 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 237 35
95% 25 275 35
90% 25 275 37
70% 27 388 24
50% 27 388 33
40% 27 388 44
30% 27 388 68
Entity #13: Chains: M - 30S Ribosomal protein S13 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 269 22
95% 25 269 41
90% 25 269 43
70% 25 269 53
50% 27 378 38
40% 27 378 51
30% 29 414 55
Entity #14: Chains: N - 30S Ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 267 26
95% 25 267 48
90% 25 267 50
70% 25 267 60
50% 25 267 93
40% 25 267 119
30% 25 267 140
Entity #15: Chains: O - 30S Ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 271 20
95% 26 276 32
90% 26 276 34
70% 26 276 47
50% 31 389 32
40% 31 389 43
30% 31 389 67
Entity #16: Chains: P - 30S Ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 263 28
95% 25 268 45
90% 25 268 47
70% 25 268 57
50% 25 268 91
40% 25 268 117
30% 27 376 76
Entity #17: Chains: Q - 30S Ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 170 53
95% 25 262 49
90% 25 266 51
70% 25 266 61
50% 25 266 94
40% 25 266 120
30% 25 266 142
Entity #18: Chains: R - 30S Ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 28 1046
95% 2 38 975
90% 2 38 998
70% 2 38 1029
50% 2 38 1094
40% 2 38 1118
30% 2 38 1098
Entity #19: Chains: S - 30S Ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 37 697
95% 2 37 1000
90% 2 37 1022
70% 2 37 1059
50% 28 379 37
40% 28 379 49
30% 28 379 72
Entity #2: Chains: B - 30S Ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 268 23
95% 25 269 38
90% 25 269 41
70% 25 269 51
50% 25 269 90
40% 27 376 53
30% 27 376 75
Entity #20: Chains: T - 30S Ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 206 42
95% 25 267 46
90% 25 267 48
70% 25 267 58
50% 25 267 92
40% 25 267 118
30% 25 267 139
Entity #21: Chains: U - 30S Ribosomal protein THX protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 249 33
95% 25 249 52
90% 25 249 55
70% 25 249 66
50% 25 249 103
40% 25 249 130
30% 25 249 150
Entity #22: Chains: X - Fragment of messenger RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S Ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 37 691
95% 2 37 991
90% 2 37 1013
70% 2 37 1045
50% 4 81 437
40% 4 82 456
30% 4 82 473
Entity #4: Chains: D - 30S Ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 261 29
95% 25 269 39
90% 25 269 42
70% 25 269 52
50% 27 376 39
40% 27 377 52
30% 27 377 74
Entity #5: Chains: E - 30S Ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 268 24
95% 25 268 42
90% 25 268 44
70% 25 268 54
50% 28 380 36
40% 28 380 48
30% 28 382 70
Entity #6: Chains: F - 30S Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 273 18
95% 32 279 29
90% 32 279 30
70% 32 279 44
50% 32 279 82
40% 32 279 106
30% 36 326 94
Entity #7: Chains: G - 30S Ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 272 19
95% 26 273 36
90% 26 273 38
70% 26 273 49
50% 29 321 56
40% 29 322 73
30% 29 322 96
Entity #8: Chains: H - 30S Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 268 21
95% 26 268 40
90% 26 272 39
70% 26 272 50
50% 29 382 35
40% 30 384 46
30% 33 421 51
Entity #9: Chains: I - 30S Ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 113 135
95% 25 268 44
90% 25 268 46
70% 25 268 56
50% 27 376 40
40% 27 376 54
30% 29 412 57
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.