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Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. 30S of the B subunit
Sequence Clustering and Redundancy Reduction Results
4KFK
Sequence Clusters for the Sequence Entities in PDB 4KFK
Entity #1: Chains: A - 16S rRNA (1504-MER) rna, length: 1504 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 189 272 19
95% 189 273 36
90% 189 273 38
70% 189 273 49
50% 215 321 56
40% 215 322 73
30% 215 322 96
Entity #11: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 268 21
95% 188 268 40
90% 189 272 39
70% 189 272 50
50% 230 382 35
40% 231 384 46
30% 238 421 51
Entity #12: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 113 135
95% 188 268 44
90% 188 268 46
70% 188 268 56
50% 227 376 40
40% 227 376 54
30% 233 412 57
Entity #13: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 186 265 27
95% 188 267 47
90% 188 267 49
70% 188 267 59
50% 233 382 34
40% 233 382 45
30% 233 387 65
Entity #14: Chains: K - 30S ribosomal protein S11 protein, length: 114 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 268 25
95% 188 268 43
90% 188 268 45
70% 188 268 55
50% 227 376 41
40% 235 416 40
30% 235 416 52
Entity #15: Chains: L - 30S ribosomal protein S12 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 237 35
95% 188 275 35
90% 188 275 37
70% 227 388 24
50% 227 388 33
40% 227 388 44
30% 227 388 68
Entity #16: Chains: M - 30S ribosomal protein S13 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 269 22
95% 188 269 41
90% 188 269 43
70% 188 269 53
50% 227 378 38
40% 227 378 51
30% 233 414 55
Entity #17: Chains: N - 30S ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 267 26
95% 188 267 48
90% 188 267 50
70% 188 267 60
50% 188 267 93
40% 188 267 119
30% 188 267 140
Entity #18: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 271 20
95% 192 276 32
90% 192 276 34
70% 192 276 47
50% 234 389 32
40% 234 389 43
30% 234 389 67
Entity #19: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 263 28
95% 188 268 45
90% 188 268 47
70% 188 268 57
50% 188 268 91
40% 188 268 117
30% 227 376 76
Entity #2: Chains: V - messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3') rna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: Q - 30S ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 92 220
95% 187 262 49
90% 188 266 51
70% 188 266 61
50% 188 266 94
40% 188 266 120
30% 188 266 142
Entity #21: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 28 1046
95% 15 38 975
90% 15 38 998
70% 15 38 1029
50% 15 38 1094
40% 15 38 1118
30% 15 38 1098
Entity #22: Chains: S - 30S ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 37 697
95% 15 37 1000
90% 15 37 1022
70% 15 37 1059
50% 228 379 37
40% 228 379 49
30% 228 379 72
Entity #23: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 61 362
95% 188 267 46
90% 188 267 48
70% 188 267 58
50% 188 267 92
40% 188 267 118
30% 188 267 139
Entity #24: Chains: U - 30S ribosomal protein Thx protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 249 33
95% 188 249 52
90% 188 249 55
70% 188 249 66
50% 188 249 103
40% 188 249 130
30% 188 249 150
Entity #3: Chains: W - P-site tRNA-fMet rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: Y - Bacterial peptide chain release factor 2 (RF-2) protein, length: 362 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 25625
95% 7 10 4935
90% 7 10 4953
70% 7 10 4876
50% 7 10 4655
40% 11 22 1843
30% 11 22 1774
Entity #5: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 268 23
95% 188 269 38
90% 188 269 41
70% 188 269 51
50% 188 269 90
40% 227 376 53
30% 227 376 75
Entity #6: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 37 691
95% 15 37 991
90% 15 37 1013
70% 15 37 1045
50% 39 81 437
40% 39 82 456
30% 39 82 473
Entity #7: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 186 261 29
95% 188 269 39
90% 188 269 42
70% 188 269 52
50% 227 376 39
40% 227 377 52
30% 227 377 74
Entity #8: Chains: E - 30S ribosomal protein S5 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 268 24
95% 188 268 42
90% 188 268 44
70% 188 268 54
50% 228 380 36
40% 228 380 48
30% 228 382 70
Entity #9: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 190 273 18
95% 196 279 29
90% 196 279 30
70% 196 279 44
50% 196 279 82
40% 196 279 106
30% 222 326 94
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.