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Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. 30S of the B subunit
Sequence Clustering and Redundancy Reduction Results
4KFK
Sequence Clusters for the Sequence Entities in PDB 4KFK
Entity #1: Chains: A - 16S rRNA (1504-MER) rna, length: 1504 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 180 259 20
95% 180 260 37
90% 180 260 39
70% 180 260 51
50% 206 308 57
40% 206 309 74
30% 206 309 97
Entity #11: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 255 23
95% 179 255 41
90% 180 259 40
70% 180 259 52
50% 221 369 36
40% 222 371 49
30% 229 408 50
Entity #12: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 113 134
95% 179 255 45
90% 179 255 48
70% 179 255 60
50% 218 363 41
40% 218 363 56
30% 224 399 59
Entity #13: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 252 29
95% 179 254 48
90% 179 254 51
70% 179 254 63
50% 224 369 34
40% 224 369 48
30% 224 374 67
Entity #14: Chains: K - 30S ribosomal protein S11 protein, length: 114 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 255 27
95% 179 255 44
90% 179 255 47
70% 179 255 59
50% 218 363 42
40% 226 403 39
30% 226 403 53
Entity #15: Chains: L - 30S ribosomal protein S12 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 224 37
95% 179 262 36
90% 179 262 38
70% 218 375 24
50% 218 375 33
40% 218 375 47
30% 218 375 71
Entity #16: Chains: M - 30S ribosomal protein S13 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 256 24
95% 179 256 42
90% 179 256 45
70% 179 256 57
50% 218 365 39
40% 218 365 53
30% 224 401 57
Entity #17: Chains: N - 30S ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 254 28
95% 179 254 49
90% 179 254 52
70% 179 254 64
50% 179 254 99
40% 179 254 124
30% 179 254 144
Entity #18: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 258 21
95% 183 263 35
90% 183 263 37
70% 183 263 48
50% 225 376 32
40% 225 376 45
30% 225 376 69
Entity #19: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 250 31
95% 179 255 46
90% 179 255 49
70% 179 255 61
50% 179 255 97
40% 179 255 122
30% 218 363 78
Entity #2: Chains: V - messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3') rna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: Q - 30S ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 92 219
95% 178 249 51
90% 179 253 53
70% 179 253 65
50% 179 253 100
40% 179 253 126
30% 179 253 146
Entity #21: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 26 1130
95% 15 36 1041
90% 15 36 1064
70% 15 36 1093
50% 15 36 1157
40% 15 36 1190
30% 15 36 1178
Entity #22: Chains: S - 30S ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 35 742
95% 15 35 1070
90% 15 35 1092
70% 15 35 1130
50% 219 366 38
40% 219 366 52
30% 219 366 75
Entity #23: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 61 359
95% 179 254 47
90% 179 254 50
70% 179 254 62
50% 179 254 98
40% 179 254 123
30% 179 254 143
Entity #24: Chains: U - 30S ribosomal protein Thx protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 238 34
95% 179 238 55
90% 179 238 59
70% 179 238 71
50% 179 238 110
40% 179 238 133
30% 179 238 153
Entity #3: Chains: W - P-site tRNA-fMet rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: Y - Bacterial peptide chain release factor 2 (RF-2) protein, length: 362 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 25429
95% 7 10 4896
90% 7 10 4916
70% 7 10 4844
50% 7 10 4624
40% 11 22 1832
30% 11 22 1769
Entity #5: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 255 25
95% 179 256 39
90% 179 256 43
70% 179 256 55
50% 179 256 96
40% 218 363 55
30% 218 363 77
Entity #6: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 35 735
95% 15 35 1063
90% 15 35 1085
70% 15 35 1119
50% 39 79 449
40% 39 80 467
30% 39 80 487
Entity #7: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 248 32
95% 179 256 40
90% 179 256 44
70% 179 256 56
50% 218 363 40
40% 218 364 54
30% 218 364 76
Entity #8: Chains: E - 30S ribosomal protein S5 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 255 26
95% 179 255 43
90% 179 255 46
70% 179 255 58
50% 219 367 37
40% 219 367 51
30% 219 369 72
Entity #9: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 181 260 18
95% 187 266 34
90% 187 266 36
70% 187 266 47
50% 187 266 88
40% 187 266 112
30% 213 313 95
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.