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Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. 50S of the A subunit
Sequence Clustering and Redundancy Reduction Results
4KFI
Sequence Clusters for the Sequence Entities in PDB 4KFI
Entity #1: Chains: A - 23S ribosomal RNA rna, length: 2879 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: N - 50S ribosomal protein L13 protein, length: 137 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 146 76
95% 103 146 125
90% 103 146 135
70% 103 146 157
50% 142 265 90
40% 142 265 114
30% 142 266 139
Entity #11: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 19 1796
95% 103 151 114
90% 103 151 123
70% 108 173 115
50% 148 296 62
40% 148 297 81
30% 221 402 54
Entity #12: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 151 69
95% 103 151 112
90% 103 151 121
70% 103 151 144
50% 103 153 190
40% 147 285 95
30% 220 394 61
Entity #13: Chains: Q - 50S ribosomal protein L16 protein, length: 134 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 16 2364
95% 103 152 106
90% 103 152 114
70% 108 177 110
50% 147 287 73
40% 147 287 94
30% 147 287 116
Entity #14: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 156 53
95% 104 156 91
90% 104 156 99
70% 104 156 122
50% 148 287 64
40% 148 289 82
30% 148 291 102
Entity #15: Chains: S - 50S ribosomal protein L18 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 19 1800
95% 7 19 2319
90% 7 19 2356
70% 7 19 2383
50% 147 284 78
40% 147 284 99
30% 147 284 119
Entity #16: Chains: T - 50S ribosomal protein L19 protein, length: 137 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 16 2361
95% 103 151 113
90% 103 151 122
70% 103 151 145
50% 103 151 194
40% 103 151 229
30% 103 151 244
Entity #17: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 99 143 79
95% 103 151 115
90% 103 151 124
70% 103 151 146
50% 148 290 66
40% 148 291 84
30% 148 291 105
Entity #18: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 151 71
95% 103 151 117
90% 103 151 126
70% 103 151 148
50% 108 179 148
40% 147 285 96
30% 147 285 118
Entity #19: Chains: W - 50S ribosomal protein L22 protein, length: 112 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 158 60
95% 105 159 96
90% 105 159 104
70% 105 159 127
50% 144 270 87
40% 144 270 108
30% 144 272 130
Entity #2: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: X - 50S ribosomal protein L23 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 152 64
95% 103 152 107
90% 103 152 115
70% 103 152 139
50% 108 176 153
40% 147 291 87
30% 214 369 73
Entity #21: Chains: Y - 50S ribosomal protein L24 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 151 70
95% 103 151 116
90% 103 151 125
70% 103 151 147
50% 103 153 191
40% 142 265 115
30% 142 267 137
Entity #22: Chains: Z - 50S ribosomal protein L25 protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 151 67
95% 104 152 104
90% 104 152 112
70% 104 152 137
50% 104 152 189
40% 104 152 227
30% 104 152 238
Entity #23: Chains: 0 - 50S ribosomal protein L27 protein, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 16 2396
95% 104 152 102
90% 104 152 110
70% 104 152 134
50% 148 288 67
40% 148 288 88
30% 148 288 108
Entity #24: Chains: 1 - 50S ribosomal protein L28 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 22 1459
95% 103 148 123
90% 103 148 131
70% 103 148 152
50% 103 148 198
40% 103 148 233
30% 103 148 250
Entity #25: Chains: 2 - 50S ribosomal protein L29 protein, length: 62 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 8 7117
95% 5 8 7364
90% 5 8 7300
70% 5 8 6998
50% 5 8 6410
40% 5 8 5907
30% 5 8 5282
Entity #26: Chains: 3 - 50S ribosomal protein L30 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 158 58
95% 104 158 98
90% 104 158 106
70% 104 158 129
50% 104 158 175
40% 148 291 86
30% 148 291 107
Entity #27: Chains: 4 - 50S ribosomal protein L31 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 11 4109
95% 8 11 4717
90% 8 11 4741
70% 8 11 4674
50% 8 11 4471
40% 8 11 4196
30% 8 11 3822
Entity #28: Chains: 5 - 50S ribosomal protein L32 protein, length: 52 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 8 7136
95% 5 8 7381
90% 5 8 7317
70% 5 8 7014
50% 5 8 6424
40% 5 8 5920
30% 5 8 5295
Entity #29: Chains: 6 - 50S ribosomal protein L33 protein, length: 44 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 149 75
95% 103 149 122
90% 103 149 130
70% 103 149 151
50% 103 150 197
40% 146 280 104
30% 146 280 126
Entity #3: Chains: D - 50S ribosomal protein L2 protein, length: 271 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 151 65
95% 103 151 108
90% 103 151 116
70% 108 173 114
50% 147 283 79
40% 147 283 100
30% 147 283 122
Entity #30: Chains: 7 - 50S ribosomal protein L34 protein, length: 48 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 151 73
95% 103 151 119
90% 103 151 128
70% 103 151 150
50% 103 151 195
40% 103 151 230
30% 103 151 245
Entity #31: Chains: 8 - 50S ribosomal protein L35 protein, length: 63 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 151 72
95% 103 151 118
90% 103 151 127
70% 103 151 149
50% 108 177 152
40% 108 177 182
30% 108 177 205
Entity #4: Chains: E - 50S ribosomal protein L3 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 151 66
95% 103 151 110
90% 103 151 118
70% 103 151 142
50% 147 288 72
40% 147 288 92
30% 147 289 114
Entity #5: Chains: F - 50S ribosomal protein L4 protein, length: 202 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 16 2325
95% 103 151 109
90% 103 151 117
70% 103 151 141
50% 108 178 150
40% 108 178 178
30% 148 290 109
Entity #6: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 16 2338
95% 104 152 105
90% 104 152 113
70% 109 174 113
50% 149 288 68
40% 149 288 89
30% 149 288 110
Entity #7: Chains: H - 50S ribosomal protein L6 protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 151 68
95% 103 151 111
90% 103 151 120
70% 103 151 143
50% 108 183 146
40% 147 292 85
30% 220 397 60
Entity #8: Chains: I - 50S ribosomal protein L9 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 17 2090
95% 91 122 176
90% 91 122 186
70% 91 122 220
50% 92 127 253
40% 123 231 137
30% 123 231 158
Entity #9: Chains: K - 50S ribosomal protein L11 protein, length: 147 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 35 579
95% 14 38 733
90% 14 38 759
70% 19 60 482
50% 59 196 127
40% 59 199 155
30% 59 201 178
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.