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Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. 50S of the A subunit
Sequence Clustering and Redundancy Reduction Results
4KFI
Sequence Clusters for the Sequence Entities in PDB 4KFI
Entity #1: Chains: A - 23S ribosomal RNA rna, length: 2879 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: N - 50S ribosomal protein L13 protein, length: 137 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 159 71
95% 112 159 120
90% 112 159 128
70% 112 159 148
50% 151 278 85
40% 151 278 109
30% 151 279 131
Entity #11: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 19 1818
95% 112 164 106
90% 112 164 114
70% 117 186 112
50% 157 309 58
40% 157 310 76
30% 230 415 54
Entity #12: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 164 62
95% 112 164 104
90% 112 164 112
70% 112 164 133
50% 112 166 171
40% 156 298 91
30% 229 407 61
Entity #13: Chains: Q - 50S ribosomal protein L16 protein, length: 134 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 16 2395
95% 112 165 98
90% 112 165 106
70% 117 190 108
50% 156 300 68
40% 156 300 90
30% 156 300 110
Entity #14: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 113 169 49
95% 113 169 86
90% 113 169 95
70% 113 169 115
50% 157 300 59
40% 157 302 77
30% 157 304 99
Entity #15: Chains: S - 50S ribosomal protein L18 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 21 1565
95% 7 21 2072
90% 7 21 2103
70% 7 21 2132
50% 156 297 69
40% 156 297 93
30% 156 297 113
Entity #16: Chains: T - 50S ribosomal protein L19 protein, length: 137 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 16 2392
95% 112 164 105
90% 112 164 113
70% 112 164 134
50% 112 164 176
40% 112 164 208
30% 112 164 227
Entity #17: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 156 75
95% 112 164 107
90% 112 164 115
70% 112 164 135
50% 157 303 61
40% 157 304 79
30% 157 304 101
Entity #18: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 164 64
95% 112 164 109
90% 112 164 117
70% 112 164 137
50% 117 192 143
40% 156 298 92
30% 156 298 112
Entity #19: Chains: W - 50S ribosomal protein L22 protein, length: 112 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 113 171 52
95% 114 172 87
90% 114 172 98
70% 114 172 119
50% 153 283 81
40% 153 283 105
30% 153 285 125
Entity #2: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: X - 50S ribosomal protein L23 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 165 57
95% 112 165 99
90% 112 165 107
70% 112 165 129
50% 117 189 148
40% 156 304 82
30% 223 382 71
Entity #21: Chains: Y - 50S ribosomal protein L24 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 164 63
95% 112 164 108
90% 112 164 116
70% 112 164 136
50% 112 166 172
40% 151 278 110
30% 151 280 130
Entity #22: Chains: Z - 50S ribosomal protein L25 protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 164 60
95% 113 165 94
90% 113 165 102
70% 113 165 127
50% 113 165 170
40% 113 165 203
30% 113 165 223
Entity #23: Chains: 0 - 50S ribosomal protein L27 protein, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 16 2426
95% 113 165 92
90% 113 165 101
70% 113 165 125
50% 157 301 63
40% 157 301 83
30% 157 301 103
Entity #24: Chains: 1 - 50S ribosomal protein L28 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 22 1478
95% 112 161 118
90% 112 161 126
70% 112 161 145
50% 112 161 182
40% 112 161 214
30% 112 161 232
Entity #25: Chains: 2 - 50S ribosomal protein L29 protein, length: 62 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 8 7213
95% 5 8 7465
90% 5 8 7395
70% 5 8 7085
50% 5 8 6491
40% 5 8 5978
30% 5 8 5340
Entity #26: Chains: 3 - 50S ribosomal protein L30 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 113 169 54
95% 113 169 91
90% 113 169 100
70% 113 169 122
50% 113 169 167
40% 157 302 86
30% 157 302 106
Entity #27: Chains: 4 - 50S ribosomal protein L31 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 11 4159
95% 8 11 4772
90% 8 11 4793
70% 8 11 4719
50% 8 11 4518
40% 8 11 4236
30% 8 11 3859
Entity #28: Chains: 5 - 50S ribosomal protein L32 protein, length: 52 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 8 7232
95% 5 8 7482
90% 5 8 7412
70% 5 8 7101
50% 5 8 6505
40% 5 8 5991
30% 5 8 5353
Entity #29: Chains: 6 - 50S ribosomal protein L33 protein, length: 44 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 162 69
95% 112 162 115
90% 112 162 123
70% 112 162 143
50% 112 163 180
40% 155 293 98
30% 155 293 119
Entity #3: Chains: D - 50S ribosomal protein L2 protein, length: 271 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 164 58
95% 112 164 100
90% 112 164 108
70% 117 186 111
50% 156 296 70
40% 156 296 94
30% 156 296 115
Entity #30: Chains: 7 - 50S ribosomal protein L34 protein, length: 48 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 164 66
95% 112 164 111
90% 112 164 119
70% 112 164 139
50% 112 164 177
40% 112 164 209
30% 112 164 228
Entity #31: Chains: 8 - 50S ribosomal protein L35 protein, length: 63 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 164 65
95% 112 164 110
90% 112 164 118
70% 112 164 138
50% 117 190 146
40% 117 190 174
30% 117 190 194
Entity #4: Chains: E - 50S ribosomal protein L3 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 164 59
95% 112 164 102
90% 112 164 110
70% 112 164 131
50% 156 301 67
40% 156 301 89
30% 156 302 108
Entity #5: Chains: F - 50S ribosomal protein L4 protein, length: 202 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 16 2356
95% 112 164 101
90% 112 164 109
70% 112 164 130
50% 117 191 145
40% 117 191 173
30% 157 303 104
Entity #6: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 16 2369
95% 113 165 95
90% 113 165 103
70% 118 187 109
50% 158 301 65
40% 158 301 85
30% 158 301 105
Entity #7: Chains: H - 50S ribosomal protein L6 protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 164 61
95% 112 164 103
90% 112 164 111
70% 112 164 132
50% 117 196 136
40% 156 305 80
30% 229 410 58
Entity #8: Chains: I - 50S ribosomal protein L9 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 17 2114
95% 99 132 164
90% 99 132 176
70% 99 132 207
50% 100 137 235
40% 131 241 132
30% 131 241 152
Entity #9: Chains: K - 50S ribosomal protein L11 protein, length: 147 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 38 527
95% 15 41 680
90% 15 41 711
70% 20 63 465
50% 60 199 127
40% 60 202 152
30% 60 204 173
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.