POP-OUT | CLOSE

An Information Portal to 105025 Biological Macromolecular Structures

Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. 30S of the A subunit
Sequence Clustering and Redundancy Reduction Results
4KFH
Sequence Clusters for the Sequence Entities in PDB 4KFH
Entity #1: Chains: A - 16S rRNA (1504-MER) rna, length: 1504 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 272 19
95% 188 273 36
90% 188 273 38
70% 188 273 49
50% 216 323 56
40% 216 324 73
30% 216 324 96
Entity #11: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 268 21
95% 187 268 40
90% 188 272 39
70% 188 272 50
50% 231 384 35
40% 232 386 47
30% 273 459 43
Entity #12: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 113 150
95% 187 268 44
90% 187 268 46
70% 187 268 56
50% 228 378 40
40% 228 378 54
30% 268 450 50
Entity #13: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 185 265 27
95% 187 267 47
90% 187 267 49
70% 187 267 59
50% 234 384 34
40% 234 384 46
30% 234 389 65
Entity #14: Chains: K - 30S ribosomal protein S11 protein, length: 114 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 268 25
95% 187 268 43
90% 187 268 45
70% 187 268 55
50% 228 378 41
40% 270 454 34
30% 270 454 44
Entity #15: Chains: L - 30S ribosomal protein S12 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 237 35
95% 187 275 35
90% 187 275 37
70% 228 390 24
50% 228 390 33
40% 228 390 45
30% 228 390 68
Entity #16: Chains: M - 30S ribosomal protein S13 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 269 22
95% 187 269 41
90% 187 269 43
70% 187 269 53
50% 228 380 38
40% 228 380 51
30% 268 452 47
Entity #17: Chains: N - 30S ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 267 26
95% 187 267 48
90% 187 267 50
70% 187 267 60
50% 187 267 93
40% 187 267 119
30% 187 267 141
Entity #18: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 271 20
95% 191 276 32
90% 191 276 34
70% 191 276 47
50% 235 391 32
40% 235 391 43
30% 235 391 67
Entity #19: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 263 28
95% 187 268 45
90% 187 268 47
70% 187 268 57
50% 187 268 91
40% 187 268 117
30% 228 378 76
Entity #2: Chains: V - messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3') rna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: Q - 30S ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 92 221
95% 186 262 49
90% 187 266 51
70% 187 266 61
50% 187 266 94
40% 187 266 120
30% 187 266 142
Entity #21: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 28 1124
95% 14 38 1052
90% 14 38 1073
70% 14 38 1105
50% 14 38 1167
40% 14 38 1185
30% 14 38 1163
Entity #22: Chains: S - 30S ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 37 768
95% 14 37 1078
90% 14 37 1097
70% 14 37 1137
50% 229 381 37
40% 229 381 49
30% 229 381 72
Entity #23: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 61 363
95% 187 267 46
90% 187 267 48
70% 187 267 58
50% 187 267 92
40% 187 267 118
30% 187 267 140
Entity #24: Chains: U - 30S ribosomal protein Thx protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 249 34
95% 187 249 53
90% 187 249 55
70% 187 249 67
50% 187 249 104
40% 187 249 132
30% 187 249 151
Entity #3: Chains: W - P-site tRNA-fMet rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: Y - Bacterial peptide chain release factor 2 (RF-2) protein, length: 362 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 25851
95% 6 10 4989
90% 6 10 5007
70% 6 10 4933
50% 6 10 4695
40% 10 22 1882
30% 10 22 1806
Entity #5: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 268 23
95% 187 269 38
90% 187 269 41
70% 187 269 51
50% 187 269 90
40% 228 378 53
30% 228 378 75
Entity #6: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 37 762
95% 14 37 1069
90% 14 37 1089
70% 14 37 1124
50% 40 83 433
40% 40 84 454
30% 40 84 471
Entity #7: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 185 261 29
95% 187 269 39
90% 187 269 42
70% 187 269 52
50% 228 378 39
40% 228 379 52
30% 228 379 74
Entity #8: Chains: E - 30S ribosomal protein S5 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 268 24
95% 187 268 42
90% 187 268 44
70% 187 268 54
50% 229 382 36
40% 229 382 48
30% 229 384 71
Entity #9: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 189 273 18
95% 195 279 29
90% 195 279 30
70% 195 279 44
50% 195 279 84
40% 195 279 106
30% 223 328 94
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.