Sequence Similarity Clusters for the Entities in PDB 4KDP

Entity #1 | Chains: A,B,C,D,E,F,G
TcaR transcription regulator protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 11 1701
95 % 11 11 2253 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.3
PDBFlex
90 % 11 11 2309
70 % 11 11 2309
50 % 11 11 2290
40 % 11 11 2276
30 % 11 11 2171
Entity #2 | Chains: H,J
DNA (5'-D(*CP*GP*CP*AP*GP*CP*GP*CP*GP*CP*AP*GP*CP*CP*CP*TP*A)-3') dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures