Sequence Similarity Clusters for the Entities in PDB 4KDP

Entity #1 | Chains: A,B,C,D,E,F,G
TcaR transcription regulator protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 11 1664
95 % 11 11 2207 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.3
PDBFlex
90 % 11 11 2266
70 % 11 11 2258
50 % 11 11 2234
40 % 11 11 2221
30 % 11 11 2122
Entity #2 | Chains: H,J
DNA (5'-D(*CP*GP*CP*AP*GP*CP*GP*CP*GP*CP*AP*GP*CP*CP*CP*TP*A)-3') dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures