Sequence Similarity Clusters for the Entities in PDB 4KDP

Entity #1 | Chains: A,B,C,D,E,F,G
TcaR transcription regulator protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 11 1998
95 % 11 11 2291 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.3
PDBFlex
90 % 11 11 2352
70 % 11 11 2350
50 % 11 11 2325
40 % 11 11 2304
30 % 11 11 2161
Entity #2 | Chains: H,J
DNA (5'-D(*CP*GP*CP*AP*GP*CP*GP*CP*GP*CP*AP*GP*CP*CP*CP*TP*A)-3') dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures