POP-OUT | CLOSE
 
70S Ribosome translocation INTERMEDIATE FA-4.2A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE pe*/E STATE. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT B. THE 30S SUBUNIT B CAN BE FOUND IN 4KDJ. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KDG (30S) AND 4KDH (50S).
Sequence Clustering and Redundancy Reduction Results
4KDK
Sequence Clusters for the Sequence Entities in PDB 4KDK
Entity #1: Chains: C - 50S ribosomal protein L1 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 68 312
95% 75 92 301
90% 75 93 314
70% 75 93 335
50% 76 130 248
40% 76 130 276
30% 84 172 208
Entity #10: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 145 98
95% 154 164 106
90% 154 164 114
70% 169 186 112
50% 236 311 58
40% 236 312 77
30% 345 451 47
Entity #11: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 164 63
95% 154 164 104
90% 154 164 112
70% 154 164 133
50% 154 166 171
40% 235 300 91
30% 344 443 53
Entity #12: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 149 83
95% 154 165 98
90% 154 165 106
70% 172 190 108
50% 238 302 67
40% 238 302 89
30% 238 302 111
Entity #13: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 155 169 49
95% 155 169 86
90% 155 169 95
70% 155 169 115
50% 236 302 59
40% 236 304 78
30% 236 306 99
Entity #14: Chains: S - 50S ribosomal protein L18 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 21 1645
95% 18 21 2154
90% 18 21 2187
70% 18 21 2196
50% 235 299 69
40% 235 299 93
30% 235 299 113
Entity #15: Chains: T - 50S ribosomal protein L19 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 148 85
95% 154 164 105
90% 154 164 113
70% 154 164 134
50% 154 164 176
40% 154 164 209
30% 154 164 227
Entity #16: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 156 75
95% 154 164 107
90% 154 164 115
70% 154 164 135
50% 236 305 60
40% 236 306 79
30% 236 306 101
Entity #17: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 164 65
95% 154 164 109
90% 154 164 117
70% 154 164 137
50% 169 192 144
40% 235 300 92
30% 235 300 112
Entity #18: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 155 171 52
95% 156 172 87
90% 156 172 98
70% 156 172 119
50% 222 285 79
40% 222 285 103
30% 222 287 125
Entity #19: Chains: X - 50S ribosomal protein L23 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 165 58
95% 154 165 99
90% 154 165 107
70% 154 165 129
50% 171 189 148
40% 237 306 81
30% 304 384 70
Entity #2: Chains: D - 50S ribosomal protein L2 protein, length: 275 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 164 59
95% 154 164 100
90% 154 164 108
70% 169 186 111
50% 235 298 70
40% 235 298 94
30% 235 298 115
Entity #20: Chains: Y - 50S ribosomal protein L24 protein, length: 107 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 164 64
95% 154 164 108
90% 154 164 116
70% 154 164 136
50% 154 166 172
40% 220 280 109
30% 220 282 128
Entity #21: Chains: Z - 50S ribosomal protein L25 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 164 61
95% 155 165 94
90% 155 165 102
70% 155 165 127
50% 155 165 170
40% 155 165 204
30% 155 165 223
Entity #22: Chains: 0 - 50S ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 149 78
95% 155 165 92
90% 155 165 101
70% 155 165 125
50% 237 303 62
40% 237 303 82
30% 237 303 105
Entity #23: Chains: 2 - 50S ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 152 79
95% 146 155 124
90% 146 155 132
70% 146 155 154
50% 146 155 198
40% 212 275 115
30% 229 299 114
Entity #24: Chains: 3 - 50S ribosomal protein L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 169 54
95% 153 169 91
90% 153 169 100
70% 153 169 123
50% 153 169 167
40% 234 304 85
30% 234 304 108
Entity #25: Chains: 5 - 50S ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 148 86
95% 146 156 123
90% 146 156 131
70% 146 156 152
50% 167 188 150
40% 233 297 95
30% 233 297 116
Entity #26: Chains: 6 - 50S ribosomal protein L33 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 162 69
95% 154 162 115
90% 154 162 123
70% 154 162 143
50% 154 163 180
40% 233 295 97
30% 233 295 118
Entity #27: Chains: 7 - 50S ribosomal protein L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 164 67
95% 154 164 111
90% 154 164 119
70% 154 164 139
50% 154 164 177
40% 154 164 210
30% 154 164 228
Entity #28: Chains: 8 - 50S ribosomal protein L35 protein, length: 64 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 164 66
95% 154 164 110
90% 154 164 118
70% 154 164 138
50% 169 190 146
40% 169 190 174
30% 169 190 194
Entity #29: Chains: 9 - 50S ribosomal protein L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 118 129
95% 106 118 188
90% 106 118 201
70% 121 144 180
50% 187 253 102
40% 187 253 128
30% 187 253 149
Entity #3: Chains: E - 50S ribosomal protein L3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 164 60
95% 154 164 102
90% 154 164 110
70% 154 164 131
50% 238 303 66
40% 238 303 87
30% 238 304 109
Entity #30: Chains: e - 50S ribosomal protein L7/L12 protein, length: 102 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 10 4867
95% 8 10 5449
90% 8 10 5457
70% 8 10 5357
50% 8 10 5033
40% 8 10 4710
30% 8 10 4262
Entity #31: Chains: f,g - 50S ribosomal protein L7/L12 protein, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #32: Chains: h - 50S ribosomal protein L7/L12 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #33: Chains: 1 - 50S ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 139 107
95% 154 161 118
90% 154 161 126
70% 154 161 145
50% 154 161 183
40% 154 161 214
30% 154 161 233
Entity #34: Chains: 4 - 50S ribosomal protein L31 protein, length: 35 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 10 4931
95% 8 10 5500
90% 8 10 5505
70% 8 10 5411
50% 8 10 5077
40% 8 10 4754
30% 8 10 4304
Entity #35: Chains: A - 23S ribosomal RNA rna, length: 2879 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - 50S ribosomal protein L4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 148 84
95% 154 164 101
90% 154 164 109
70% 154 164 130
50% 174 191 145
40% 174 191 173
30% 241 305 106
Entity #5: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 149 81
95% 155 165 95
90% 155 165 103
70% 170 187 109
50% 237 303 64
40% 237 303 84
30% 237 303 107
Entity #6: Chains: H - 50S ribosomal protein L6 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 164 62
95% 154 164 103
90% 154 164 111
70% 154 164 132
50% 168 196 136
40% 234 307 80
30% 343 446 51
Entity #7: Chains: J - 50S ribosomal protein L10 protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #8: Chains: K - 50S ribosomal protein L11 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 38 579
95% 28 41 699
90% 28 41 731
70% 43 63 467
50% 110 201 125
40% 110 204 151
30% 110 206 174
Entity #9: Chains: N - 50S ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 159 71
95% 150 159 120
90% 150 159 128
70% 150 159 148
50% 216 280 85
40% 216 280 108
30% 216 281 130
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.