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70S Ribosome translocation INTERMEDIATE FA-4.2A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE pe*/E STATE. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT B. THE 30S SUBUNIT B CAN BE FOUND IN 4KDJ. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KDG (30S) AND 4KDH (50S).
Sequence Clustering and Redundancy Reduction Results
4KDK
Sequence Clusters for the Sequence Entities in PDB 4KDK
Entity #1: Chains: C - 50S ribosomal protein L1 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 69 310
95% 76 93 297
90% 76 94 311
70% 76 94 331
50% 77 132 244
40% 77 132 275
30% 85 174 204
Entity #10: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 145 98
95% 154 164 106
90% 154 164 114
70% 169 186 113
50% 238 314 57
40% 238 315 76
30% 347 454 46
Entity #11: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 164 63
95% 154 164 104
90% 154 164 112
70% 154 164 133
50% 154 166 173
40% 237 303 89
30% 346 446 54
Entity #12: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 149 83
95% 154 165 98
90% 154 165 106
70% 172 190 108
50% 240 305 67
40% 240 305 87
30% 240 305 111
Entity #13: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 155 169 50
95% 155 169 86
90% 155 169 95
70% 155 169 117
50% 238 305 59
40% 238 307 77
30% 238 309 98
Entity #14: Chains: S - 50S ribosomal protein L18 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 21 1657
95% 18 21 2169
90% 18 21 2202
70% 18 21 2211
50% 237 302 69
40% 237 302 92
30% 237 302 113
Entity #15: Chains: T - 50S ribosomal protein L19 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 148 85
95% 154 164 105
90% 154 164 113
70% 154 164 134
50% 154 164 177
40% 154 164 209
30% 154 164 227
Entity #16: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 156 75
95% 154 164 107
90% 154 164 115
70% 154 164 135
50% 238 308 61
40% 238 309 79
30% 238 309 102
Entity #17: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 164 65
95% 154 164 109
90% 154 164 117
70% 154 164 137
50% 169 192 145
40% 237 303 90
30% 237 303 112
Entity #18: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 155 171 53
95% 156 172 88
90% 156 172 98
70% 156 172 119
50% 224 288 79
40% 224 288 104
30% 224 290 121
Entity #19: Chains: X - 50S ribosomal protein L23 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 165 58
95% 154 165 99
90% 154 165 107
70% 154 165 129
50% 171 189 149
40% 239 309 82
30% 306 387 69
Entity #2: Chains: D - 50S ribosomal protein L2 protein, length: 275 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 164 59
95% 154 164 100
90% 154 164 108
70% 169 186 112
50% 237 301 71
40% 237 301 94
30% 237 301 115
Entity #20: Chains: Y - 50S ribosomal protein L24 protein, length: 107 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 164 64
95% 154 164 108
90% 154 164 116
70% 154 164 136
50% 154 166 174
40% 222 283 107
30% 222 285 128
Entity #21: Chains: Z - 50S ribosomal protein L25 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 164 61
95% 155 165 94
90% 155 165 102
70% 155 165 127
50% 155 165 172
40% 155 165 204
30% 155 165 223
Entity #22: Chains: 0 - 50S ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 149 78
95% 155 165 92
90% 155 165 101
70% 155 165 125
50% 239 306 63
40% 239 306 83
30% 239 306 104
Entity #23: Chains: 2 - 50S ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 152 79
95% 146 155 124
90% 146 155 132
70% 146 155 154
50% 146 155 200
40% 214 278 111
30% 231 302 114
Entity #24: Chains: 3 - 50S ribosomal protein L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 155 171 52
95% 155 171 90
90% 155 171 99
70% 155 171 120
50% 155 171 168
40% 238 309 81
30% 238 309 103
Entity #25: Chains: 5 - 50S ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 148 86
95% 146 156 123
90% 146 156 131
70% 146 156 152
50% 167 188 151
40% 235 300 95
30% 235 300 116
Entity #26: Chains: 6 - 50S ribosomal protein L33 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 162 69
95% 154 162 115
90% 154 162 123
70% 154 162 143
50% 154 163 181
40% 235 297 97
30% 235 297 117
Entity #27: Chains: 7 - 50S ribosomal protein L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 164 67
95% 154 164 111
90% 154 164 119
70% 154 164 139
50% 154 164 178
40% 154 164 210
30% 154 164 228
Entity #28: Chains: 8 - 50S ribosomal protein L35 protein, length: 64 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 164 66
95% 154 164 110
90% 154 164 118
70% 154 164 138
50% 169 190 147
40% 169 190 174
30% 169 190 195
Entity #29: Chains: 9 - 50S ribosomal protein L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 118 133
95% 106 118 193
90% 106 118 206
70% 121 144 183
50% 189 256 102
40% 189 256 127
30% 189 256 145
Entity #3: Chains: E - 50S ribosomal protein L3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 164 60
95% 154 164 102
90% 154 164 110
70% 154 164 131
50% 240 306 66
40% 240 306 86
30% 240 307 110
Entity #30: Chains: e - 50S ribosomal protein L7/L12 protein, length: 102 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 10 4899
95% 8 10 5480
90% 8 10 5489
70% 8 10 5392
50% 8 10 5057
40% 8 10 4735
30% 8 10 4283
Entity #31: Chains: f,g - 50S ribosomal protein L7/L12 protein, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #32: Chains: h - 50S ribosomal protein L7/L12 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #33: Chains: 1 - 50S ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 139 107
95% 154 161 118
90% 154 161 126
70% 154 161 145
50% 154 161 185
40% 154 161 215
30% 154 161 234
Entity #34: Chains: 4 - 50S ribosomal protein L31 protein, length: 35 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 10 4964
95% 8 10 5531
90% 8 10 5537
70% 8 10 5446
50% 8 10 5101
40% 8 10 4779
30% 8 10 4325
Entity #35: Chains: A - 23S ribosomal RNA rna, length: 2879 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - 50S ribosomal protein L4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 148 84
95% 154 164 101
90% 154 164 109
70% 154 164 130
50% 174 191 146
40% 174 191 173
30% 243 308 106
Entity #5: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 149 81
95% 155 165 95
90% 155 165 103
70% 170 187 109
50% 239 306 64
40% 239 306 84
30% 239 306 107
Entity #6: Chains: H - 50S ribosomal protein L6 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 164 62
95% 154 164 103
90% 154 164 111
70% 154 164 132
50% 168 196 140
40% 236 310 80
30% 345 449 51
Entity #7: Chains: J - 50S ribosomal protein L10 protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #8: Chains: K - 50S ribosomal protein L11 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 38 586
95% 28 41 703
90% 28 41 735
70% 43 63 473
50% 112 204 122
40% 112 207 149
30% 112 209 173
Entity #9: Chains: N - 50S ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 159 72
95% 150 159 120
90% 150 159 128
70% 150 159 148
50% 218 283 85
40% 218 283 106
30% 218 284 129
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.