POP-OUT | CLOSE
 
70S Ribosome translocation INTERMEDIATE FA-4.2A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE pe*/E STATE. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT B. THE 30S SUBUNIT B CAN BE FOUND IN 4KDJ. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KDG (30S) AND 4KDH (50S).
Sequence Clustering and Redundancy Reduction Results
4KDK
Sequence Clusters for the Sequence Entities in PDB 4KDK
Entity #1: Chains: C - 50S ribosomal protein L1 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 66 334
95% 75 90 301
90% 75 91 315
70% 75 91 338
50% 76 128 240
40% 76 128 269
30% 84 170 210
Entity #10: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 132 108
95% 143 151 114
90% 143 151 123
70% 158 173 115
50% 225 296 62
40% 225 297 81
30% 300 402 56
Entity #11: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 151 69
95% 143 151 112
90% 143 151 121
70% 143 151 146
50% 143 153 192
40% 224 285 95
30% 299 394 62
Entity #12: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 136 102
95% 143 152 106
90% 143 152 114
70% 161 177 111
50% 227 287 73
40% 227 287 94
30% 227 287 116
Entity #13: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 156 53
95% 144 156 91
90% 144 156 99
70% 144 156 122
50% 225 287 64
40% 225 289 82
30% 225 291 102
Entity #14: Chains: S - 50S ribosomal protein L18 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 19 1806
95% 18 19 2329
90% 18 19 2367
70% 18 19 2394
50% 224 284 78
40% 224 284 99
30% 224 284 119
Entity #15: Chains: T - 50S ribosomal protein L19 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 135 104
95% 143 151 113
90% 143 151 122
70% 143 151 147
50% 143 151 196
40% 143 151 231
30% 143 151 245
Entity #16: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 143 80
95% 143 151 115
90% 143 151 124
70% 143 151 148
50% 225 290 66
40% 225 291 84
30% 225 291 106
Entity #17: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 151 71
95% 143 151 117
90% 143 151 126
70% 143 151 150
50% 158 179 148
40% 224 285 96
30% 224 285 118
Entity #18: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 158 60
95% 145 159 96
90% 145 159 104
70% 145 159 127
50% 211 270 87
40% 211 270 108
30% 211 272 130
Entity #19: Chains: X - 50S ribosomal protein L23 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 152 64
95% 143 152 107
90% 143 152 115
70% 143 152 141
50% 160 176 154
40% 226 291 87
30% 293 369 73
Entity #2: Chains: D - 50S ribosomal protein L2 protein, length: 275 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 151 65
95% 143 151 108
90% 143 151 116
70% 158 173 114
50% 224 283 79
40% 224 283 100
30% 224 283 122
Entity #20: Chains: Y - 50S ribosomal protein L24 protein, length: 107 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 151 70
95% 143 151 116
90% 143 151 125
70% 143 151 149
50% 143 153 193
40% 209 265 115
30% 209 267 137
Entity #21: Chains: Z - 50S ribosomal protein L25 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 151 67
95% 144 152 104
90% 144 152 112
70% 144 152 139
50% 144 152 191
40% 144 152 228
30% 144 152 240
Entity #22: Chains: 0 - 50S ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 136 96
95% 144 152 102
90% 144 152 110
70% 144 152 135
50% 226 288 67
40% 226 288 88
30% 226 288 108
Entity #23: Chains: 2 - 50S ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 139 97
95% 135 142 131
90% 135 142 144
70% 135 142 168
50% 135 142 212
40% 201 260 119
30% 218 284 120
Entity #24: Chains: 3 - 50S ribosomal protein L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 158 58
95% 144 158 98
90% 144 158 106
70% 144 158 129
50% 144 158 176
40% 225 291 86
30% 225 291 107
Entity #25: Chains: 5 - 50S ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 135 105
95% 135 143 128
90% 135 143 140
70% 135 143 165
50% 156 175 161
40% 222 282 102
30% 222 282 124
Entity #26: Chains: 6 - 50S ribosomal protein L33 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 149 76
95% 143 149 122
90% 143 149 131
70% 143 149 153
50% 143 150 199
40% 222 280 104
30% 222 280 126
Entity #27: Chains: 7 - 50S ribosomal protein L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 151 73
95% 143 151 119
90% 143 151 128
70% 143 151 152
50% 143 151 197
40% 143 151 232
30% 143 151 246
Entity #28: Chains: 8 - 50S ribosomal protein L35 protein, length: 64 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 151 72
95% 143 151 118
90% 143 151 127
70% 143 151 151
50% 158 177 152
40% 158 177 182
30% 158 177 205
Entity #29: Chains: 9 - 50S ribosomal protein L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 105 184
95% 95 105 262
90% 95 105 273
70% 110 131 206
50% 176 238 109
40% 176 238 132
30% 176 238 152
Entity #3: Chains: E - 50S ribosomal protein L3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 151 66
95% 143 151 110
90% 143 151 118
70% 143 151 144
50% 227 288 72
40% 227 288 93
30% 227 289 114
Entity #30: Chains: e - 50S ribosomal protein L7/L12 protein, length: 102 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 8 7036
95% 8 8 7299
90% 8 8 7235
70% 8 8 6939
50% 8 8 6356
40% 8 8 5858
30% 8 8 5234
Entity #31: Chains: f,g - 50S ribosomal protein L7/L12 protein, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #32: Chains: h - 50S ribosomal protein L7/L12 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #33: Chains: 1 - 50S ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 123 126 114
95% 143 148 123
90% 143 148 132
70% 143 148 155
50% 143 148 202
40% 143 148 236
30% 143 148 252
Entity #34: Chains: 4 - 50S ribosomal protein L31 protein, length: 35 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 8 7187
95% 8 8 7431
90% 8 8 7360
70% 8 8 7056
50% 8 8 6461
40% 8 8 5956
30% 8 8 5328
Entity #35: Chains: A - 23S ribosomal RNA rna, length: 2879 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - 50S ribosomal protein L4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 135 103
95% 143 151 109
90% 143 151 117
70% 143 151 143
50% 163 178 150
40% 163 178 178
30% 230 290 109
Entity #5: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 136 98
95% 144 152 105
90% 144 152 113
70% 159 174 113
50% 226 288 68
40% 226 288 89
30% 226 288 110
Entity #6: Chains: H - 50S ribosomal protein L6 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 151 68
95% 143 151 111
90% 143 151 120
70% 143 151 145
50% 157 183 147
40% 223 292 85
30% 298 397 61
Entity #7: Chains: J - 50S ribosomal protein L10 protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #8: Chains: K - 50S ribosomal protein L11 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 35 581
95% 27 38 737
90% 27 38 763
70% 42 60 486
50% 109 196 127
40% 109 199 155
30% 109 201 179
Entity #9: Chains: N - 50S ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 146 77
95% 139 146 125
90% 139 146 135
70% 139 146 158
50% 205 265 90
40% 205 265 114
30% 205 266 139
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.