POP-OUT | CLOSE
 
70S Ribosome translocation INTERMEDIATE FA-4.2A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE pe*/E STATE. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT A. THE 30S SUBUNIT A CAN BE FOUND IN 4KDG. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KDJ (30S) AND 4KDK (50S).
Sequence Clustering and Redundancy Reduction Results
4KDH
Sequence Clusters for the Sequence Entities in PDB 4KDH
Entity #1: Chains: C - 50S ribosomal protein L1 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 68 310
95% 74 92 297
90% 74 93 308
70% 74 93 330
50% 75 130 240
40% 75 130 265
30% 83 172 206
Entity #10: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 137 104
95% 145 156 114
90% 145 156 122
70% 160 178 114
50% 227 301 62
40% 227 302 79
30% 302 407 56
Entity #11: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 156 68
95% 145 156 112
90% 145 156 120
70% 145 156 140
50% 145 158 179
40% 226 290 92
30% 301 399 62
Entity #12: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 141 86
95% 145 157 105
90% 145 157 114
70% 163 182 110
50% 229 292 70
40% 229 292 91
30% 229 292 113
Entity #13: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 161 51
95% 146 161 89
90% 146 161 98
70% 146 161 120
50% 227 292 63
40% 227 294 80
30% 227 296 99
Entity #14: Chains: S - 50S ribosomal protein L18 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 21 1559
95% 17 21 2066
90% 17 21 2100
70% 17 21 2129
50% 226 289 73
40% 226 289 97
30% 226 289 119
Entity #15: Chains: T - 50S ribosomal protein L19 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 140 100
95% 145 156 113
90% 145 156 121
70% 145 156 141
50% 145 156 183
40% 145 156 218
30% 145 156 233
Entity #16: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 148 78
95% 145 156 115
90% 145 156 123
70% 145 156 142
50% 227 295 64
40% 227 296 83
30% 227 296 105
Entity #17: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 156 70
95% 145 156 117
90% 145 156 125
70% 145 156 144
50% 160 184 148
40% 226 290 94
30% 226 290 115
Entity #18: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 163 55
95% 147 164 93
90% 147 164 101
70% 147 164 124
50% 213 275 86
40% 213 275 111
30% 213 277 129
Entity #19: Chains: X - 50S ribosomal protein L23 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 157 63
95% 145 157 106
90% 145 157 115
70% 145 157 136
50% 162 181 151
40% 228 296 86
30% 295 374 73
Entity #2: Chains: D - 50S ribosomal protein L2 protein, length: 275 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 156 64
95% 145 156 107
90% 145 156 116
70% 160 178 113
50% 226 288 74
40% 226 288 98
30% 226 288 121
Entity #20: Chains: Y - 50S ribosomal protein L24 protein, length: 107 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 156 69
95% 145 156 116
90% 145 156 124
70% 145 156 143
50% 145 158 180
40% 211 270 115
30% 211 272 133
Entity #21: Chains: Z - 50S ribosomal protein L25 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 156 66
95% 146 157 102
90% 146 157 110
70% 146 157 133
50% 146 157 178
40% 146 157 212
30% 146 157 230
Entity #22: Chains: 0 - 50S ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 141 82
95% 146 157 100
90% 146 157 108
70% 146 157 130
50% 228 293 66
40% 228 293 87
30% 228 293 107
Entity #23: Chains: 2 - 50S ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 144 83
95% 137 147 128
90% 137 147 137
70% 137 147 161
50% 137 147 206
40% 203 265 117
30% 220 289 120
Entity #24: Chains: 3 - 50S ribosomal protein L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 161 58
95% 144 161 97
90% 144 161 105
70% 144 161 128
50% 144 161 173
40% 225 294 89
30% 225 294 110
Entity #25: Chains: 5 - 50S ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 140 102
95% 137 148 126
90% 137 148 135
70% 137 148 158
50% 158 180 152
40% 224 287 99
30% 224 287 122
Entity #26: Chains: 6 - 50S ribosomal protein L33 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 154 74
95% 145 154 121
90% 145 154 129
70% 145 154 151
50% 145 155 188
40% 224 285 101
30% 224 285 125
Entity #27: Chains: 7 - 50S ribosomal protein L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 156 72
95% 145 156 119
90% 145 156 127
70% 145 156 146
50% 145 156 185
40% 145 156 221
30% 145 156 235
Entity #28: Chains: 8 - 50S ribosomal protein L35 protein, length: 64 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 156 71
95% 145 156 118
90% 145 156 126
70% 145 156 145
50% 160 182 150
40% 160 182 178
30% 160 182 199
Entity #29: Chains: 9 - 50S ribosomal protein L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 110 149
95% 97 110 218
90% 97 110 231
70% 112 136 195
50% 178 243 106
40% 178 243 129
30% 178 243 150
Entity #3: Chains: E - 50S ribosomal protein L3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 156 65
95% 145 156 110
90% 145 156 118
70% 145 156 138
50% 229 293 69
40% 229 293 90
30% 229 294 111
Entity #30: Chains: e - 50S ribosomal protein L7/L12 protein, length: 102 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 10 4811
95% 7 10 5394
90% 7 10 5402
70% 7 10 5305
50% 7 10 4998
40% 7 10 4677
30% 7 10 4233
Entity #31: Chains: f,g - 50S ribosomal protein L7/L12 protein, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #32: Chains: h - 50S ribosomal protein L7/L12 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #33: Chains: 1 - 50S ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 131 112
95% 145 153 122
90% 145 153 130
70% 145 153 153
50% 145 153 197
40% 145 153 231
30% 145 153 244
Entity #34: Chains: 4 - 50S ribosomal protein L31 protein, length: 35 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 10 4874
95% 7 10 5445
90% 7 10 5451
70% 7 10 5358
50% 7 10 5040
40% 7 10 4719
30% 7 10 4272
Entity #35: Chains: A - 23S ribosomal RNA rna, length: 2879 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - 50S ribosomal protein L4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 140 96
95% 145 156 109
90% 145 156 117
70% 145 156 137
50% 165 183 149
40% 165 183 177
30% 232 295 108
Entity #5: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 141 85
95% 146 157 103
90% 146 157 111
70% 161 179 111
50% 228 293 67
40% 228 293 88
30% 228 293 109
Entity #6: Chains: H - 50S ribosomal protein L6 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 156 67
95% 145 156 111
90% 145 156 119
70% 145 156 139
50% 159 188 144
40% 225 297 84
30% 300 402 60
Entity #7: Chains: J - 50S ribosomal protein L10 protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #8: Chains: K - 50S ribosomal protein L11 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 38 525
95% 27 41 678
90% 27 41 709
70% 42 63 462
50% 109 199 127
40% 109 202 152
30% 109 204 173
Entity #9: Chains: N - 50S ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 151 75
95% 141 151 123
90% 141 151 132
70% 141 151 156
50% 207 270 89
40% 207 270 114
30% 207 271 135
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.