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An Information Portal to 105025 Biological Macromolecular Structures

70S Ribosome translocation INTERMEDIATE FA-4.2A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE pe*/E STATE. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT A. THE 30S SUBUNIT A CAN BE FOUND IN 4KDG. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KDJ (30S) AND 4KDK (50S).
Sequence Clustering and Redundancy Reduction Results
4KDH
Sequence Clusters for the Sequence Entities in PDB 4KDH
Entity #1: Chains: C - 50S ribosomal protein L1 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 69 310
95% 75 93 297
90% 75 94 311
70% 75 94 331
50% 76 131 246
40% 76 131 276
30% 84 173 206
Entity #10: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 145 98
95% 153 164 106
90% 153 164 114
70% 168 186 113
50% 237 313 57
40% 237 314 76
30% 346 453 46
Entity #11: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 164 63
95% 153 164 104
90% 153 164 112
70% 153 164 133
50% 153 166 172
40% 236 302 90
30% 345 445 53
Entity #12: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 149 83
95% 153 165 98
90% 153 165 106
70% 171 190 108
50% 239 304 66
40% 239 304 87
30% 239 304 111
Entity #13: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 169 50
95% 154 169 86
90% 154 169 95
70% 154 169 117
50% 237 304 59
40% 237 306 77
30% 237 308 99
Entity #14: Chains: S - 50S ribosomal protein L18 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 21 1652
95% 17 21 2164
90% 17 21 2197
70% 17 21 2206
50% 236 301 69
40% 236 301 93
30% 236 301 113
Entity #15: Chains: T - 50S ribosomal protein L19 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 148 85
95% 153 164 105
90% 153 164 113
70% 153 164 134
50% 153 164 176
40% 153 164 209
30% 153 164 227
Entity #16: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 156 75
95% 153 164 107
90% 153 164 115
70% 153 164 135
50% 237 307 61
40% 237 308 79
30% 237 308 102
Entity #17: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 164 65
95% 153 164 109
90% 153 164 117
70% 153 164 137
50% 168 192 144
40% 236 302 91
30% 236 302 112
Entity #18: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 171 53
95% 155 172 88
90% 155 172 98
70% 155 172 119
50% 223 287 79
40% 223 287 104
30% 223 289 121
Entity #19: Chains: X - 50S ribosomal protein L23 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 165 58
95% 153 165 99
90% 153 165 107
70% 153 165 129
50% 170 189 148
40% 238 308 82
30% 305 386 69
Entity #2: Chains: D - 50S ribosomal protein L2 protein, length: 275 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 164 59
95% 153 164 100
90% 153 164 108
70% 168 186 112
50% 236 300 70
40% 236 300 94
30% 236 300 115
Entity #20: Chains: Y - 50S ribosomal protein L24 protein, length: 107 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 164 64
95% 153 164 108
90% 153 164 116
70% 153 164 136
50% 153 166 173
40% 221 282 109
30% 221 284 128
Entity #21: Chains: Z - 50S ribosomal protein L25 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 164 61
95% 154 165 94
90% 154 165 102
70% 154 165 127
50% 154 165 171
40% 154 165 204
30% 154 165 223
Entity #22: Chains: 0 - 50S ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 149 78
95% 154 165 92
90% 154 165 101
70% 154 165 125
50% 238 305 62
40% 238 305 83
30% 238 305 107
Entity #23: Chains: 2 - 50S ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 152 79
95% 145 155 124
90% 145 155 132
70% 145 155 154
50% 145 155 199
40% 213 277 111
30% 230 301 114
Entity #24: Chains: 3 - 50S ribosomal protein L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 171 52
95% 154 171 90
90% 154 171 99
70% 154 171 120
50% 154 171 167
40% 237 308 81
30% 237 308 103
Entity #25: Chains: 5 - 50S ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 148 86
95% 145 156 123
90% 145 156 131
70% 145 156 152
50% 166 188 150
40% 234 299 95
30% 234 299 116
Entity #26: Chains: 6 - 50S ribosomal protein L33 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 162 69
95% 153 162 115
90% 153 162 123
70% 153 162 143
50% 153 163 180
40% 234 297 97
30% 234 297 117
Entity #27: Chains: 7 - 50S ribosomal protein L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 164 67
95% 153 164 111
90% 153 164 119
70% 153 164 139
50% 153 164 177
40% 153 164 210
30% 153 164 228
Entity #28: Chains: 8 - 50S ribosomal protein L35 protein, length: 64 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 164 66
95% 153 164 110
90% 153 164 118
70% 153 164 138
50% 168 190 146
40% 168 190 174
30% 168 190 195
Entity #29: Chains: 9 - 50S ribosomal protein L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 118 130
95% 105 118 190
90% 105 118 203
70% 120 144 183
50% 188 255 101
40% 188 255 127
30% 188 255 146
Entity #3: Chains: E - 50S ribosomal protein L3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 164 60
95% 153 164 102
90% 153 164 110
70% 153 164 131
50% 239 305 65
40% 239 305 86
30% 239 306 110
Entity #30: Chains: e - 50S ribosomal protein L7/L12 protein, length: 102 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 10 4886
95% 7 10 5471
90% 7 10 5479
70% 7 10 5381
50% 7 10 5050
40% 7 10 4726
30% 7 10 4275
Entity #31: Chains: f,g - 50S ribosomal protein L7/L12 protein, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #32: Chains: h - 50S ribosomal protein L7/L12 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #33: Chains: 1 - 50S ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 133 139 107
95% 153 161 118
90% 153 161 126
70% 153 161 145
50% 153 161 184
40% 153 161 215
30% 153 161 234
Entity #34: Chains: 4 - 50S ribosomal protein L31 protein, length: 35 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 10 4950
95% 7 10 5522
90% 7 10 5527
70% 7 10 5435
50% 7 10 5094
40% 7 10 4770
30% 7 10 4317
Entity #35: Chains: A - 23S ribosomal RNA rna, length: 2879 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - 50S ribosomal protein L4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 148 84
95% 153 164 101
90% 153 164 109
70% 153 164 130
50% 173 191 145
40% 173 191 173
30% 242 307 108
Entity #5: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 149 81
95% 154 165 95
90% 154 165 103
70% 169 187 109
50% 238 305 63
40% 238 305 84
30% 238 305 109
Entity #6: Chains: H - 50S ribosomal protein L6 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 164 62
95% 153 164 103
90% 153 164 111
70% 153 164 132
50% 167 196 139
40% 235 309 80
30% 344 448 51
Entity #7: Chains: J - 50S ribosomal protein L10 protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #8: Chains: K - 50S ribosomal protein L11 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 38 585
95% 27 41 702
90% 27 41 734
70% 42 63 473
50% 111 203 121
40% 111 206 150
30% 111 208 175
Entity #9: Chains: N - 50S ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 159 72
95% 149 159 120
90% 149 159 128
70% 149 159 148
50% 217 282 85
40% 217 282 108
30% 217 283 129
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.