POP-OUT | CLOSE
 
70S Ribosome translocation INTERMEDIATE FA-4.2A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE pe*/E STATE. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT A. THE 50S SUBUNIT A CAN BE FOUND IN 4KDH. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KDJ (30S) AND 4KDK (50S).
Sequence Clustering and Redundancy Reduction Results
4KDG
Sequence Clusters for the Sequence Entities in PDB 4KDG
Entity #1: Chains: B - 30S ribosomal protein S2 protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 229 255 25
95% 229 256 39
90% 229 256 43
70% 229 256 55
50% 229 256 96
40% 295 363 55
30% 295 363 77
Entity #10: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 229 255 27
95% 229 255 44
90% 229 255 47
70% 229 255 59
50% 295 363 42
40% 307 403 39
30% 307 403 53
Entity #11: Chains: L - 30S ribosomal protein S12 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 224 37
95% 229 262 36
90% 229 262 38
70% 295 375 24
50% 295 375 33
40% 295 375 47
30% 295 375 71
Entity #12: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 229 256 24
95% 229 256 42
90% 229 256 45
70% 229 256 57
50% 295 365 39
40% 295 365 53
30% 305 401 57
Entity #13: Chains: N - 30S ribosomal protein S14 type Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 229 254 28
95% 229 254 49
90% 229 254 52
70% 229 254 64
50% 229 254 99
40% 229 254 124
30% 229 254 144
Entity #14: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 229 258 21
95% 234 263 35
90% 234 263 37
70% 234 263 48
50% 303 376 32
40% 303 376 45
30% 303 376 69
Entity #15: Chains: P - 30S ribosomal protein S16 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 229 250 31
95% 229 255 46
90% 229 255 49
70% 229 255 61
50% 229 255 97
40% 229 255 122
30% 295 363 78
Entity #16: Chains: Q - 30S ribosomal protein S17 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 157 62
95% 224 249 51
90% 228 253 53
70% 228 253 65
50% 228 253 100
40% 228 253 126
30% 228 253 146
Entity #17: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 26 1130
95% 26 36 1041
90% 26 36 1064
70% 26 36 1093
50% 26 36 1157
40% 26 36 1190
30% 26 36 1178
Entity #18: Chains: S - 30S ribosomal protein S19 protein, length: 79 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 35 742
95% 26 35 1070
90% 26 35 1092
70% 26 35 1130
50% 297 366 38
40% 297 366 52
30% 297 366 75
Entity #19: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 186 193 43
95% 229 254 47
90% 229 254 50
70% 229 254 62
50% 229 254 98
40% 229 254 123
30% 229 254 143
Entity #2: Chains: C - 30S ribosomal protein S3 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 35 735
95% 26 35 1063
90% 26 35 1085
70% 26 35 1119
50% 50 79 449
40% 50 80 467
30% 50 80 487
Entity #20: Chains: A - ribosomal RNA 16S rna, length: 1511 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #21: Chains: W - transfer RNA rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #22: Chains: V - messenger RNA rna, length: 23 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - Elongation factor G protein, length: 687 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 21 1388
95% 26 34 1044
90% 26 35 1017
70% 26 35 1049
50% 39 52 674
40% 39 52 698
30% 41 54 671
Entity #3: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 227 248 32
95% 230 256 40
90% 230 256 44
70% 230 256 56
50% 296 363 40
40% 296 364 54
30% 296 364 76
Entity #4: Chains: E - 30S ribosomal protein S5 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 230 255 26
95% 230 255 43
90% 230 255 46
70% 230 255 58
50% 297 367 37
40% 297 367 51
30% 297 369 72
Entity #5: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 232 260 18
95% 238 266 34
90% 238 266 36
70% 238 266 47
50% 238 266 88
40% 238 266 112
30% 264 313 95
Entity #6: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 231 259 20
95% 231 260 37
90% 231 260 39
70% 231 260 51
50% 258 308 57
40% 258 309 74
30% 258 309 97
Entity #7: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 227 255 23
95% 227 255 41
90% 231 259 40
70% 231 259 52
50% 299 369 36
40% 300 371 49
30% 311 408 50
Entity #8: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 142 82
95% 229 255 45
90% 229 255 48
70% 229 255 60
50% 295 363 41
40% 295 363 56
30% 305 399 59
Entity #9: Chains: J - 30S ribosomal protein S10 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 227 252 29
95% 229 254 48
90% 229 254 51
70% 229 254 63
50% 301 369 34
40% 301 369 48
30% 301 374 67
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.