POP-OUT | CLOSE
 
70S Ribosome translocation intermediate FA-3.6A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE pe*/E STATE. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT B. THE 30S SUBUNIT A CAN BE FOUND IN 4KDA. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KD8 (30S) AND 4KD9 (50S).
Sequence Clustering and Redundancy Reduction Results
4KDB
Sequence Clusters for the Sequence Entities in PDB 4KDB
Entity #1: Chains: C - 50S ribosomal protein L1 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 66 331
95% 68 90 300
90% 68 91 314
70% 68 91 337
50% 69 128 240
40% 69 128 269
30% 75 170 209
Entity #10: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 132 107
95% 136 151 114
90% 136 151 123
70% 149 173 115
50% 212 296 62
40% 212 297 81
30% 285 402 54
Entity #11: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 151 69
95% 136 151 112
90% 136 151 121
70% 136 151 144
50% 136 153 190
40% 211 285 95
30% 284 394 61
Entity #12: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 136 101
95% 136 152 106
90% 136 152 114
70% 151 177 110
50% 213 287 73
40% 213 287 94
30% 213 287 116
Entity #13: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 156 53
95% 137 156 91
90% 137 156 99
70% 137 156 122
50% 212 287 64
40% 212 289 82
30% 212 291 102
Entity #14: Chains: S - 50S ribosomal protein L18 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 19 1800
95% 14 19 2319
90% 14 19 2356
70% 14 19 2383
50% 211 284 78
40% 211 284 99
30% 211 284 119
Entity #15: Chains: T - 50S ribosomal protein L19 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 135 103
95% 136 151 113
90% 136 151 122
70% 136 151 145
50% 136 151 194
40% 136 151 229
30% 136 151 244
Entity #16: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 143 79
95% 136 151 115
90% 136 151 124
70% 136 151 146
50% 212 290 66
40% 212 291 84
30% 212 291 105
Entity #17: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 151 71
95% 136 151 117
90% 136 151 126
70% 136 151 148
50% 149 179 148
40% 211 285 96
30% 211 285 118
Entity #18: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 158 60
95% 138 159 96
90% 138 159 104
70% 138 159 127
50% 200 270 87
40% 200 270 108
30% 200 272 130
Entity #19: Chains: X - 50S ribosomal protein L23 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 152 64
95% 136 152 107
90% 136 152 115
70% 136 152 139
50% 151 176 153
40% 213 291 87
30% 280 369 73
Entity #2: Chains: D - 50S ribosomal protein L2 protein, length: 275 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 151 65
95% 136 151 108
90% 136 151 116
70% 149 173 114
50% 211 283 79
40% 211 283 100
30% 211 283 122
Entity #20: Chains: Y - 50S ribosomal protein L24 protein, length: 107 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 151 70
95% 136 151 116
90% 136 151 125
70% 136 151 147
50% 136 153 191
40% 198 265 115
30% 198 267 137
Entity #21: Chains: Z - 50S ribosomal protein L25 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 151 67
95% 137 152 104
90% 137 152 112
70% 137 152 137
50% 137 152 189
40% 137 152 227
30% 137 152 238
Entity #22: Chains: 0 - 50S ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 123 136 95
95% 137 152 102
90% 137 152 110
70% 137 152 134
50% 213 288 67
40% 213 288 88
30% 213 288 108
Entity #23: Chains: 2 - 50S ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 139 96
95% 128 142 130
90% 128 142 143
70% 128 142 167
50% 128 142 212
40% 190 260 118
30% 205 284 120
Entity #24: Chains: 3 - 50S ribosomal protein L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 158 58
95% 137 158 98
90% 137 158 106
70% 137 158 129
50% 137 158 175
40% 212 291 86
30% 212 291 107
Entity #25: Chains: 5 - 50S ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 135 104
95% 128 143 128
90% 128 143 140
70% 128 143 164
50% 147 175 160
40% 209 282 102
30% 209 282 124
Entity #26: Chains: 6 - 50S ribosomal protein L33 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 149 75
95% 136 149 122
90% 136 149 130
70% 136 149 151
50% 136 150 197
40% 209 280 104
30% 209 280 126
Entity #27: Chains: 7 - 50S ribosomal protein L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 151 73
95% 136 151 119
90% 136 151 128
70% 136 151 150
50% 136 151 195
40% 136 151 230
30% 136 151 245
Entity #28: Chains: 8 - 50S ribosomal protein L35 protein, length: 64 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 151 72
95% 136 151 118
90% 136 151 127
70% 136 151 149
50% 149 177 152
40% 149 177 182
30% 149 177 205
Entity #29: Chains: 9 - 50S ribosomal protein L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 105 183
95% 88 105 261
90% 88 105 271
70% 101 131 206
50% 163 238 109
40% 163 238 132
30% 163 238 152
Entity #3: Chains: E - 50S ribosomal protein L3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 151 66
95% 136 151 110
90% 136 151 118
70% 136 151 142
50% 214 288 72
40% 214 288 92
30% 214 289 114
Entity #30: Chains: e - 50S ribosomal protein L7/L12 protein, length: 102 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 8 7000
95% 4 8 7262
90% 4 8 7204
70% 4 8 6908
50% 4 8 6328
40% 4 8 5832
30% 4 8 5210
Entity #31: Chains: f,g - 50S ribosomal protein L7/L12 protein, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #32: Chains: h - 50S ribosomal protein L7/L12 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #33: Chains: 1 - 50S ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 116 126 114
95% 136 148 123
90% 136 148 131
70% 136 148 152
50% 136 148 198
40% 136 148 233
30% 136 148 250
Entity #34: Chains: 4 - 50S ribosomal protein L31 protein, length: 35 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 8 7151
95% 4 8 7394
90% 4 8 7329
70% 4 8 7025
50% 4 8 6433
40% 4 8 5930
30% 4 8 5304
Entity #35: Chains: A - 23S ribosomal RNA rna, length: 2879 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - 50S ribosomal protein L4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 135 102
95% 136 151 109
90% 136 151 117
70% 136 151 141
50% 154 178 150
40% 154 178 178
30% 217 290 109
Entity #5: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 123 136 97
95% 137 152 105
90% 137 152 113
70% 150 174 113
50% 213 288 68
40% 213 288 89
30% 213 288 110
Entity #6: Chains: H - 50S ribosomal protein L6 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 151 68
95% 136 151 111
90% 136 151 120
70% 136 151 143
50% 148 183 146
40% 210 292 85
30% 283 397 60
Entity #7: Chains: J - 50S ribosomal protein L10 protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #8: Chains: K - 50S ribosomal protein L11 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 35 579
95% 23 38 733
90% 23 38 759
70% 36 60 482
50% 99 196 127
40% 99 199 155
30% 99 201 178
Entity #9: Chains: N - 50S ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 146 76
95% 132 146 125
90% 132 146 135
70% 132 146 157
50% 194 265 90
40% 194 265 114
30% 194 266 139
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.