POP-OUT | CLOSE
 
70S Ribosome translocation intermediate FA-3.6A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE pe*/E STATE. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT B. THE 50S SUBUNIT A CAN BE FOUND IN 4KDB. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KD8 (30S) AND 4KD9 (50S).
Sequence Clustering and Redundancy Reduction Results
4KDA
Sequence Clusters for the Sequence Entities in PDB 4KDA
Entity #1: Chains: B - 30S ribosomal protein S2 protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 232 268 23
95% 232 269 38
90% 232 269 41
70% 232 269 51
50% 232 269 90
40% 294 376 53
30% 294 376 75
Entity #10: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 232 268 25
95% 232 268 43
90% 232 268 45
70% 232 268 55
50% 294 376 41
40% 324 436 38
30% 324 436 51
Entity #11: Chains: L - 30S ribosomal protein S12 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 237 35
95% 232 275 35
90% 232 275 37
70% 294 388 24
50% 294 388 33
40% 294 388 44
30% 294 388 68
Entity #12: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 232 269 22
95% 232 269 41
90% 232 269 43
70% 232 269 53
50% 294 378 38
40% 294 378 51
30% 322 434 54
Entity #13: Chains: N - 30S ribosomal protein S14 type Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 232 267 26
95% 232 267 48
90% 232 267 50
70% 232 267 60
50% 232 267 93
40% 232 267 119
30% 232 267 140
Entity #14: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 232 271 20
95% 236 276 32
90% 236 276 34
70% 236 276 47
50% 301 389 32
40% 301 389 43
30% 301 389 67
Entity #15: Chains: P - 30S ribosomal protein S16 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 232 263 28
95% 232 268 45
90% 232 268 47
70% 232 268 57
50% 232 268 91
40% 232 268 117
30% 294 376 76
Entity #16: Chains: Q - 30S ribosomal protein S17 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 170 53
95% 229 262 49
90% 231 266 51
70% 231 266 61
50% 231 266 94
40% 231 266 120
30% 231 266 142
Entity #17: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 28 1114
95% 23 38 1012
90% 23 38 1035
70% 23 38 1078
50% 23 38 1154
40% 23 38 1174
30% 23 38 1150
Entity #18: Chains: S - 30S ribosomal protein S19 protein, length: 79 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 37 734
95% 23 37 1040
90% 23 37 1061
70% 23 37 1109
50% 295 379 37
40% 295 379 49
30% 295 379 72
Entity #19: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 206 42
95% 232 267 46
90% 232 267 48
70% 232 267 58
50% 232 267 92
40% 232 267 118
30% 232 267 139
Entity #2: Chains: C - 30S ribosomal protein S3 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 37 728
95% 23 37 1031
90% 23 37 1052
70% 23 37 1095
50% 47 81 438
40% 47 82 457
30% 47 82 475
Entity #20: Chains: A - ribosomal RNA 16S rna, length: 1511 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #21: Chains: W - transfer RNA rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #22: Chains: V - messenger RNA rna, length: 23 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - Elongation factor G protein, length: 687 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 21 1470
95% 22 36 1017
90% 22 37 997
70% 22 37 1036
50% 35 54 657
40% 35 54 688
30% 37 56 660
Entity #24: Chains: U - VIOMYCIN protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 229 261 29
95% 232 269 39
90% 232 269 42
70% 232 269 52
50% 294 376 39
40% 294 377 52
30% 294 377 74
Entity #4: Chains: E - 30S ribosomal protein S5 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 232 268 24
95% 232 268 42
90% 232 268 44
70% 232 268 54
50% 295 380 36
40% 295 380 48
30% 295 382 71
Entity #5: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 234 273 18
95% 240 279 29
90% 240 279 30
70% 240 279 44
50% 240 279 82
40% 240 279 106
30% 266 326 94
Entity #6: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 233 272 19
95% 233 273 36
90% 233 273 38
70% 233 273 49
50% 260 321 56
40% 260 322 73
30% 260 322 96
Entity #7: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 231 268 21
95% 231 268 40
90% 233 272 39
70% 233 272 50
50% 297 382 35
40% 298 384 46
30% 327 441 47
Entity #8: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 155 76
95% 232 268 44
90% 232 268 46
70% 232 268 56
50% 294 376 40
40% 294 376 54
30% 322 432 56
Entity #9: Chains: J - 30S ribosomal protein S10 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 230 265 27
95% 232 267 47
90% 232 267 49
70% 232 267 59
50% 300 382 34
40% 300 382 45
30% 300 387 65
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.