POP-OUT | CLOSE
 
70S Ribosome translocation intermediate FA-3.6A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE pe*/E STATE. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT A. THE 30S SUBUNIT A CAN BE FOUND IN 4KD8. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KDA (30S) AND 4KDB (50S).
Sequence Clustering and Redundancy Reduction Results
4KD9
Sequence Clusters for the Sequence Entities in PDB 4KD9
Entity #1: Chains: C - 50S ribosomal protein L1 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 66 334
95% 67 90 301
90% 67 91 315
70% 67 91 338
50% 68 128 240
40% 68 128 269
30% 74 170 210
Entity #10: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 132 108
95% 135 151 114
90% 135 151 123
70% 148 173 115
50% 211 296 62
40% 211 297 81
30% 284 402 56
Entity #11: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 151 69
95% 135 151 112
90% 135 151 121
70% 135 151 146
50% 135 153 191
40% 210 285 95
30% 283 394 62
Entity #12: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 136 102
95% 135 152 106
90% 135 152 114
70% 150 177 111
50% 212 287 73
40% 212 287 94
30% 212 287 116
Entity #13: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 156 53
95% 136 156 91
90% 136 156 99
70% 136 156 122
50% 211 287 64
40% 211 289 82
30% 211 291 102
Entity #14: Chains: S - 50S ribosomal protein L18 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 19 1803
95% 13 19 2328
90% 13 19 2365
70% 13 19 2393
50% 210 284 78
40% 210 284 99
30% 210 284 119
Entity #15: Chains: T - 50S ribosomal protein L19 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 135 104
95% 135 151 113
90% 135 151 122
70% 135 151 147
50% 135 151 196
40% 135 151 231
30% 135 151 245
Entity #16: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 143 80
95% 135 151 115
90% 135 151 124
70% 135 151 148
50% 211 290 66
40% 211 291 84
30% 211 291 105
Entity #17: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 151 71
95% 135 151 117
90% 135 151 126
70% 135 151 150
50% 148 179 148
40% 210 285 96
30% 210 285 118
Entity #18: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 158 60
95% 137 159 96
90% 137 159 104
70% 137 159 127
50% 199 270 87
40% 199 270 108
30% 199 272 130
Entity #19: Chains: X - 50S ribosomal protein L23 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 152 64
95% 135 152 107
90% 135 152 115
70% 135 152 140
50% 150 176 154
40% 212 291 87
30% 279 369 73
Entity #2: Chains: D - 50S ribosomal protein L2 protein, length: 275 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 151 65
95% 135 151 108
90% 135 151 116
70% 148 173 114
50% 210 283 79
40% 210 283 100
30% 210 283 122
Entity #20: Chains: Y - 50S ribosomal protein L24 protein, length: 107 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 151 70
95% 135 151 116
90% 135 151 125
70% 135 151 149
50% 135 153 192
40% 197 265 115
30% 197 267 137
Entity #21: Chains: Z - 50S ribosomal protein L25 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 151 67
95% 136 152 104
90% 136 152 112
70% 136 152 138
50% 136 152 190
40% 136 152 228
30% 136 152 240
Entity #22: Chains: 0 - 50S ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 136 96
95% 136 152 102
90% 136 152 110
70% 136 152 135
50% 212 288 67
40% 212 288 88
30% 212 288 108
Entity #23: Chains: 2 - 50S ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 139 97
95% 127 142 130
90% 127 142 143
70% 127 142 167
50% 127 142 212
40% 189 260 119
30% 204 284 120
Entity #24: Chains: 3 - 50S ribosomal protein L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 158 58
95% 136 158 98
90% 136 158 106
70% 136 158 129
50% 136 158 175
40% 211 291 86
30% 211 291 107
Entity #25: Chains: 5 - 50S ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 135 105
95% 127 143 128
90% 127 143 140
70% 127 143 164
50% 146 175 161
40% 208 282 102
30% 208 282 124
Entity #26: Chains: 6 - 50S ribosomal protein L33 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 149 76
95% 135 149 122
90% 135 149 130
70% 135 149 153
50% 135 150 199
40% 208 280 104
30% 208 280 126
Entity #27: Chains: 7 - 50S ribosomal protein L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 151 73
95% 135 151 119
90% 135 151 128
70% 135 151 152
50% 135 151 197
40% 135 151 232
30% 135 151 246
Entity #28: Chains: 8 - 50S ribosomal protein L35 protein, length: 64 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 151 72
95% 135 151 118
90% 135 151 127
70% 135 151 151
50% 148 177 152
40% 148 177 182
30% 148 177 205
Entity #29: Chains: 9 - 50S ribosomal protein L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 105 184
95% 87 105 262
90% 87 105 272
70% 100 131 206
50% 162 238 109
40% 162 238 132
30% 162 238 152
Entity #3: Chains: E - 50S ribosomal protein L3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 151 66
95% 135 151 110
90% 135 151 118
70% 135 151 144
50% 213 288 72
40% 213 288 92
30% 213 289 114
Entity #30: Chains: e - 50S ribosomal protein L7/L12 protein, length: 102 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 8 7022
95% 3 8 7287
90% 3 8 7224
70% 3 8 6930
50% 3 8 6348
40% 3 8 5848
30% 3 8 5227
Entity #31: Chains: f,g - 50S RIBOSOMAL PROTEIN L7/L12 protein, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #32: Chains: h - 50S RIBOSOMAL PROTEIN L7/L12 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #33: Chains: 1 - 50S ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 115 126 114
95% 135 148 123
90% 135 148 131
70% 135 148 154
50% 135 148 200
40% 135 148 235
30% 135 148 251
Entity #34: Chains: 4 - 50S ribosomal protein L31 protein, length: 35 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 8 7173
95% 3 8 7419
90% 3 8 7349
70% 3 8 7047
50% 3 8 6453
40% 3 8 5946
30% 3 8 5321
Entity #35: Chains: A - 23S ribosomal RNA rna, length: 2879 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - 50S ribosomal protein L4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 135 103
95% 135 151 109
90% 135 151 117
70% 135 151 143
50% 153 178 150
40% 153 178 178
30% 216 290 109
Entity #5: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 136 98
95% 136 152 105
90% 136 152 113
70% 149 174 113
50% 212 288 68
40% 212 288 89
30% 212 288 110
Entity #6: Chains: H - 50S ribosomal protein L6 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 151 68
95% 135 151 111
90% 135 151 120
70% 135 151 145
50% 147 183 147
40% 209 292 85
30% 282 397 61
Entity #7: Chains: J - 50S RIBOSOMAL PROTEIN L10 protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #8: Chains: K - 50S ribosomal protein L11 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 35 581
95% 22 38 737
90% 22 38 763
70% 35 60 485
50% 98 196 127
40% 98 199 155
30% 98 201 178
Entity #9: Chains: N - 50S ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 146 77
95% 131 146 125
90% 131 146 135
70% 131 146 158
50% 193 265 90
40% 193 265 114
30% 193 266 139
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.